genome.fa.s7134.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007134.1 Hibiscus syriacus cultivar Beakdansim tig00018658_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  64426

Tables:   1   

This is table  1  of  1  ( 65 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1002--1027	13	2.0	13	100	0	52	76	15	7	0	0.99
1238--1275	20	1.9	20	88	0	58	21	7	39	31	1.82
1398--1484	40	2.1	41	85	4	113	22	17	25	34	1.96
1409--1490	20	4.1	20	91	1	128	21	17	25	35	1.95
1483--1534	20	2.6	21	84	6	72	32	9	30	26	1.89
3463--3488	2	13.0	2	100	0	52	50	0	0	50	1.00
6370--6844	265	1.8	256	88	6	722	28	12	20	39	1.89
7209--7291	43	1.9	43	92	0	139	36	20	15	27	1.93
7280--7325	18	2.6	18	89	3	67	28	19	8	43	1.80
8067--8126	20	3.0	20	85	4	77	36	18	20	25	1.94
8583--8671	20	4.4	20	82	2	117	34	24	22	17	1.96
8676--8782	19	5.8	19	78	12	125	46	15	21	15	1.83
8654--8782	38	3.7	35	77	13	122	45	16	22	15	1.84
8786--8854	20	3.8	20	72	21	78	13	21	18	46	1.83
8791--8920	34	3.9	34	89	2	190	15	23	18	42	1.88
8791--8920	67	1.9	68	87	1	190	15	23	18	42	1.88
9062--9137	33	2.3	34	90	2	118	14	21	18	46	1.84
8825--9265	237	1.9	237	97	0	828	31	20	13	34	1.91
9259--9295	14	2.6	14	86	0	56	48	21	0	29	1.50
10638--10745	42	2.6	42	76	8	105	23	18	37	21	1.95
11229--11276	20	2.4	20	82	0	60	35	25	18	20	1.95
11321--11370	20	2.5	20	93	0	82	24	18	22	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13248--13301	20	2.7	20	88	0	81	38	25	18	16	1.92
13325--13393	20	3.5	20	89	0	102	24	21	18	34	1.96
13308--13412	40	2.9	34	75	15	102	21	23	19	35	1.96
13982--14038	20	2.8	21	89	5	82	22	14	19	43	1.86
14031--14077	21	2.2	21	88	0	67	31	17	27	23	1.96
17481--17509	15	2.0	15	93	6	51	41	0	6	51	1.28
19046--19073	13	2.2	13	100	0	56	10	0	35	53	1.36
21202--21271	9	7.4	9	75	20	63	60	1	2	35	1.21
21203--21272	19	3.7	19	76	19	65	58	1	2	37	1.22
23181--23326	3	48.7	3	93	0	247	34	2	0	63	1.07
23828--23854	14	1.9	14	100	0	54	81	3	14	0	0.82
27092--27143	14	3.6	14	89	2	68	21	15	7	55	1.64
30268--30311	16	2.4	18	85	14	56	79	0	20	0	0.73
32624--32764	50	2.8	50	100	0	282	24	14	21	39	1.91
32541--32900	183	2.0	183	99	0	711	26	14	21	37	1.91
35512--35566	22	2.5	22	87	0	83	34	14	14	36	1.87
35973--37095	113	9.9	113	94	0	1694	37	13	19	29	1.90
35968--37095	454	2.5	452	91	1	1756	37	13	19	29	1.90
37392--37546	3	51.7	3	92	0	256	34	2	0	62	1.09
38048--38072	13	1.9	13	100	0	50	80	4	16	0	0.87
42803--42850	24	1.9	26	83	8	64	12	8	25	54	1.65
47723--47747	10	2.5	10	100	0	50	60	0	8	32	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47724--47773	15	3.4	15	81	10	50	64	2	10	24	1.35
47768--47795	13	2.2	13	100	0	56	71	0	0	28	0.86
47803--47873	31	2.4	31	83	4	83	49	7	1	42	1.38
47828--48033	72	2.9	69	77	16	217	44	7	3	44	1.49
47968--48053	35	2.6	32	82	12	93	44	9	3	43	1.53
47853--48091	108	2.2	109	79	12	262	44	7	3	44	1.47
47854--48065	34	5.9	36	75	19	142	44	7	3	44	1.49
47935--48176	77	3.2	75	74	21	188	43	8	4	44	1.53
48156--48195	2	20.5	2	85	14	57	47	2	0	50	1.14
48690--49085	84	4.7	84	76	6	318	27	19	22	30	1.98
49096--49335	83	2.9	84	85	3	310	26	18	24	30	1.98
55693--55717	13	1.9	13	100	0	50	72	0	0	28	0.86
55898--55983	35	2.6	32	82	12	93	44	9	3	43	1.53
55744--55967	70	3.2	70	76	17	200	45	7	3	43	1.48
55782--56030	34	6.8	35	73	21	176	43	7	3	45	1.49
55794--56022	108	2.1	107	79	13	254	44	6	3	44	1.48
55972--56098	39	3.2	40	71	12	95	42	8	5	43	1.58
56088--56125	2	18.5	2	84	15	51	47	5	0	47	1.24
56725--56783	28	2.1	29	93	3	102	32	8	1	57	1.39
60710--60735	3	8.7	3	100	0	52	69	0	0	30	0.89
60956--61025	23	3.0	23	91	4	106	32	21	25	20	1.97

Tables:   1

The End!