genome.fa.s7135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007135.1 Hibiscus syriacus cultivar Beakdansim tig00018661_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  71651

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3160--3186	13	2.1	13	100	0	54	33	22	0	44	1.53
10006--10121	24	4.9	23	85	6	135	25	14	20	38	1.91
10006--10113	46	2.3	47	82	6	130	25	14	20	38	1.91
11453--11608	56	2.8	56	78	4	161	24	12	23	39	1.90
12166--12192	13	2.1	13	100	0	54	37	14	25	22	1.93
15977--16295	3	105.7	3	99	0	620	66	33	0	0	0.92
16294--16322	3	9.7	3	100	0	58	68	0	0	31	0.89
21825--22100	58	4.7	57	74	12	204	29	22	10	38	1.87
21876--22101	58	3.9	58	78	4	238	28	23	10	38	1.87
21851--22100	117	2.1	117	89	0	374	28	22	10	38	1.87
22506--22553	19	2.7	16	77	22	51	27	25	18	29	1.98
28958--29215	117	2.2	117	84	2	331	31	19	9	39	1.84
29076--29237	58	2.8	57	74	11	141	32	22	10	34	1.88
29619--29666	19	2.6	18	83	9	62	27	22	18	31	1.97
29577--29711	63	2.1	64	82	9	161	24	18	20	36	1.95
38356--38384	14	2.0	15	93	6	51	55	0	0	44	0.99
39752--39791	3	13.3	3	100	0	80	67	0	0	32	0.91
45710--45747	20	1.9	20	94	0	67	31	13	36	18	1.89
45710--45761	20	2.6	20	84	6	61	34	13	30	21	1.92
45789--45841	19	2.8	19	91	0	88	35	16	15	32	1.90
46288--46559	45	6.0	45	93	1	422	37	8	23	30	1.84
51917--52143	54	4.2	54	84	4	260	32	19	18	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51917--52175	107	2.4	106	81	5	272	33	18	17	30	1.94
51941--52175	54	4.4	52	82	7	229	34	16	17	32	1.92
57498--57703	54	3.8	54	83	2	245	32	17	16	33	1.93
57469--57699	107	2.1	108	84	0	311	30	18	17	33	1.94
57504--57733	54	4.3	53	81	5	214	33	16	16	33	1.91
57469--57733	107	2.5	108	81	1	282	32	16	16	33	1.92
67389--67462	32	2.3	32	83	2	105	36	13	17	32	1.89
67543--67600	15	3.8	15	75	4	53	46	12	5	36	1.63

Tables:   1

The End!