Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007136.1 Hibiscus syriacus cultivar Beakdansim tig00018666_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 94679
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.34
Found at i:3415 original size:16 final size:15
Alignment explanation
Indices: 3382--3419 Score: 58
Period size: 16 Copynumber: 2.5 Consensus size: 15
3372 CAAATTTAGA
3382 AAATAAATAAATAAT
1 AAATAAATAAATAAT
*
3397 AAATAAATAAAATATT
1 AAATAAAT-AAATAAT
3413 AAATAAA
1 AAATAAA
3420 AGCCAATTTC
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
15 8 0.38
16 13 0.62
ACGTcount: A:0.74, C:0.00, G:0.00, T:0.26
Consensus pattern (15 bp):
AAATAAATAAATAAT
Found at i:4682 original size:26 final size:24
Alignment explanation
Indices: 4649--4697 Score: 62
Period size: 25 Copynumber: 2.0 Consensus size: 24
4639 ATATTGAGGA
4649 GAAAGAACCAATAAAATTTTAAAAT
1 GAAAGAACCAAT-AAATTTTAAAAT
**
4674 GAAACGAACTTATAAATTTTAAAA
1 GAAA-GAACCAATAAATTTTAAAA
4698 AGATAAAAAA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
25 15 0.71
26 6 0.29
ACGTcount: A:0.57, C:0.08, G:0.08, T:0.27
Consensus pattern (24 bp):
GAAAGAACCAATAAATTTTAAAAT
Found at i:5096 original size:2 final size:2
Alignment explanation
Indices: 5089--5121 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
5079 ATTCAAAGTA
5089 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
5122 ACACTCTTTT
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:6281 original size:29 final size:29
Alignment explanation
Indices: 6195--6281 Score: 156
Period size: 29 Copynumber: 3.0 Consensus size: 29
6185 TATAAAAGAA
*
6195 ATTTCTTAATTAAGTTGGGGATAAAACCA
1 ATTTCTTAATTAAGTTGGGGATAAAACCT
6224 ATTTCTTAATTAAGTTGGGGATAAAACCT
1 ATTTCTTAATTAAGTTGGGGATAAAACCT
*
6253 ATTTCTTAATTAAGTTGGGTATAAAACCT
1 ATTTCTTAATTAAGTTGGGGATAAAACCT
6282 CATATGGTGA
Statistics
Matches: 56, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
29 56 1.00
ACGTcount: A:0.36, C:0.10, G:0.16, T:0.38
Consensus pattern (29 bp):
ATTTCTTAATTAAGTTGGGGATAAAACCT
Found at i:9020 original size:82 final size:82
Alignment explanation
Indices: 8880--9044 Score: 258
Period size: 82 Copynumber: 2.0 Consensus size: 82
8870 GTCCATGTTG
* *
8880 AAGCAGATTAACATATTTAACAGGTGATTGTTTTGACAGGAGTCTTTAAAATCTTGCTAGATAGT
1 AAGCAGATTAACATATTTAACAAGTGATTGTTTTGACAGGAGTCTTTAAAATCATGCTAGATAGT
* * *
8945 ATCTTCTAACAGCTAAA
66 ATATTCGAAAAGCTAAA
* * *
8962 AAGCAGATTAACATGTTTAACAAGTGTTTGTTTTGACATGAGTCTTTAAAATCATGCTAGATAGT
1 AAGCAGATTAACATATTTAACAAGTGATTGTTTTGACAGGAGTCTTTAAAATCATGCTAGATAGT
9027 ATATTCGAAAAGCTAAA
66 ATATTCGAAAAGCTAAA
9044 A
1 A
9045 TGTAAAAATG
Statistics
Matches: 75, Mismatches: 8, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
82 75 1.00
ACGTcount: A:0.37, C:0.12, G:0.17, T:0.34
Consensus pattern (82 bp):
AAGCAGATTAACATATTTAACAAGTGATTGTTTTGACAGGAGTCTTTAAAATCATGCTAGATAGT
ATATTCGAAAAGCTAAA
Found at i:16506 original size:23 final size:23
Alignment explanation
Indices: 16474--16521 Score: 69
Period size: 23 Copynumber: 2.1 Consensus size: 23
16464 AAAGAAAAGG
* *
16474 AAAAGAAAAAGAAAATAACAAAA
1 AAAAGAAAAAAAAAAAAACAAAA
*
16497 AAAAGTAAAAAAAAAAAACAAAA
1 AAAAGAAAAAAAAAAAAACAAAA
16520 AA
1 AA
16522 CAAAATTATA
Statistics
Matches: 22, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 22 1.00
ACGTcount: A:0.85, C:0.04, G:0.06, T:0.04
Consensus pattern (23 bp):
AAAAGAAAAAAAAAAAAACAAAA
Found at i:16526 original size:26 final size:26
Alignment explanation
Indices: 16479--16535 Score: 62
Period size: 26 Copynumber: 2.2 Consensus size: 26
16469 AAAGGAAAAG
* *
16479 AAAAAGAAAATAACAAAAAAAAGTAA
1 AAAAAAAAAACAACAAAAAAAAGTAA
* *
16505 AAAAAAAAAACAA-AAAACAAAATTAT
1 AAAAAAAAAACAACAAAA-AAAAGTAA
16531 AAAAA
1 AAAAA
16536 TAACAAAAAA
Statistics
Matches: 26, Mismatches: 4, Indels: 2
0.81 0.12 0.06
Matches are distributed among these distances:
25 4 0.15
26 22 0.85
ACGTcount: A:0.82, C:0.05, G:0.04, T:0.09
Consensus pattern (26 bp):
AAAAAAAAAACAACAAAAAAAAGTAA
Found at i:16550 original size:13 final size:12
Alignment explanation
Indices: 16480--16551 Score: 60
Period size: 12 Copynumber: 5.9 Consensus size: 12
16470 AAGGAAAAGA
16480 AAAAGAAAATAAC
1 AAAA-AAAATAAC
16493 AAAAAAAAGTAA-
1 AAAAAAAA-TAAC
16505 AAAAAAAA-AAC
1 AAAAAAAATAAC
*
16516 AAAAAACAA-AAT
1 AAAAAA-AATAAC
* *
16528 TATAAAAATAAC
1 AAAAAAAATAAC
16540 AAAAAATAATAA
1 AAAAAA-AATAA
16552 TATGTAGCAC
Statistics
Matches: 48, Mismatches: 6, Indels: 10
0.75 0.09 0.16
Matches are distributed among these distances:
10 2 0.04
11 8 0.17
12 26 0.54
13 12 0.25
ACGTcount: A:0.81, C:0.06, G:0.03, T:0.11
Consensus pattern (12 bp):
AAAAAAAATAAC
Found at i:17275 original size:14 final size:13
Alignment explanation
Indices: 17256--17285 Score: 51
Period size: 13 Copynumber: 2.2 Consensus size: 13
17246 ATATTATATC
17256 AAAAATTAATATTA
1 AAAAATT-ATATTA
17270 AAAAATTATATTA
1 AAAAATTATATTA
17283 AAA
1 AAA
17286 TTCAAAAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 9 0.56
14 7 0.44
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (13 bp):
AAAAATTATATTA
Found at i:18357 original size:13 final size:14
Alignment explanation
Indices: 18334--18363 Score: 53
Period size: 13 Copynumber: 2.2 Consensus size: 14
18324 TTCCCATTAC
18334 AGACGTGCATATGA
1 AGACGTGCATATGA
18348 AGAC-TGCATATGA
1 AGACGTGCATATGA
18361 AGA
1 AGA
18364 TTGTCCAACT
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
13 12 0.75
14 4 0.25
ACGTcount: A:0.40, C:0.13, G:0.27, T:0.20
Consensus pattern (14 bp):
AGACGTGCATATGA
Found at i:19165 original size:18 final size:17
Alignment explanation
Indices: 19138--19171 Score: 50
Period size: 18 Copynumber: 1.9 Consensus size: 17
19128 CATGTTGAGC
19138 TCAAAGTATATAAAAAAG
1 TCAAAGTATA-AAAAAAG
*
19156 TCAAATTATAAAAAAA
1 TCAAAGTATAAAAAAA
19172 CTGATATGAT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
17 6 0.40
18 9 0.60
ACGTcount: A:0.65, C:0.06, G:0.06, T:0.24
Consensus pattern (17 bp):
TCAAAGTATAAAAAAAG
Found at i:21426 original size:18 final size:18
Alignment explanation
Indices: 21379--21419 Score: 55
Period size: 18 Copynumber: 2.3 Consensus size: 18
21369 AGGCCAAGAT
* *
21379 AAAAATGAATAAGATGAG
1 AAAAATAAATAAAATGAG
*
21397 TAAAATAAATAAAATGAG
1 AAAAATAAATAAAATGAG
21415 AAAAA
1 AAAAA
21420 ATAATAATGA
Statistics
Matches: 19, Mismatches: 4, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.68, C:0.00, G:0.15, T:0.17
Consensus pattern (18 bp):
AAAAATAAATAAAATGAG
Found at i:21694 original size:2 final size:2
Alignment explanation
Indices: 21687--21789 Score: 79
Period size: 2 Copynumber: 51.5 Consensus size: 2
21677 AATGGAAATA
* * * *
21687 AT AT AT AT AT AT AT AT AT AT AT AT GAA AT A- AT AA AA AA AGT A-
1 AT AT AT AT AT AT AT AT AT AT AT AT -AT AT AT AT AT AT AT A-T AT
* * *
21729 AT AT AT AT AT AT AT AT AT AT AT AT AT A- ACG AT AA AA AGT A- AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A-T AT AT AT A-T AT AT
21771 AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT A
21790 GATAAGAAAA
Statistics
Matches: 86, Mismatches: 7, Indels: 16
0.79 0.06 0.15
Matches are distributed among these distances:
1 4 0.05
2 78 0.91
3 4 0.05
ACGTcount: A:0.56, C:0.01, G:0.04, T:0.39
Consensus pattern (2 bp):
AT
Found at i:21699 original size:42 final size:41
Alignment explanation
Indices: 21653--21809 Score: 152
Period size: 42 Copynumber: 3.9 Consensus size: 41
21643 TAAATAAAAA
*
21653 ATATACATATA-ATGATGATAA-ATAAATGGAAATAATATATAT
1 ATATATATATATAT-ATGATAAGATAAA--GAAATAATATATAT
* *
21695 ATATATATATATATATGA-AATAATAAAAAAAGTAATATATAT
1 ATATATATATATATATGATAA-GATAAAGAAA-TAATATATAT
*
21737 ATATATATATATATAT-ATAACGATAAA-AAGT-A-ATATAT
1 ATATATATATATATATGATAA-GATAAAGAAATAATATATAT
21775 ATATATATATATATA-GATAAGA-AAATGAAATAATA
1 ATATATATATATATATGATAAGATAAA-GAAATAATA
21810 AAAAAAGTAA
Statistics
Matches: 99, Mismatches: 6, Indels: 22
0.78 0.05 0.17
Matches are distributed among these distances:
36 3 0.03
37 2 0.02
38 28 0.28
39 2 0.02
40 2 0.02
41 8 0.08
42 47 0.47
43 7 0.07
ACGTcount: A:0.57, C:0.01, G:0.07, T:0.34
Consensus pattern (41 bp):
ATATATATATATATATGATAAGATAAAGAAATAATATATAT
Found at i:21716 original size:40 final size:39
Alignment explanation
Indices: 21653--21809 Score: 137
Period size: 38 Copynumber: 3.9 Consensus size: 39
21643 TAAATAAAAA
*
21653 ATATACATATA-ATGATGATAA-ATAAATGGAAATAATATAT
1 ATATATATATATAT-AT-ATAAGATAAAT-GAAATAATATAT
**
21693 ATATATATATATATATATGAA-ATAATAAAAAAAGTAATATATAT
1 ATATATATATATATATAT-AAGAT-A-AATGAAA-T-A-ATATAT
*
21737 ATATATATATATATATATAACGATAAA--AAGTAATATAT
1 ATATATATATATATATATAA-GATAAATGAAATAATATAT
*
21775 ATATATATATATATAGATAAGA-AAATGAAATAATA
1 ATATATATATATATATATAAGATAAATGAAATAATA
21810 AAAAAAGTAA
Statistics
Matches: 100, Mismatches: 6, Indels: 24
0.77 0.05 0.18
Matches are distributed among these distances:
36 3 0.03
37 2 0.02
38 32 0.32
39 3 0.03
40 17 0.17
41 8 0.08
42 3 0.03
43 5 0.05
44 25 0.25
45 2 0.02
ACGTcount: A:0.57, C:0.01, G:0.07, T:0.34
Consensus pattern (39 bp):
ATATATATATATATATATAAGATAAATGAAATAATATAT
Found at i:21815 original size:16 final size:16
Alignment explanation
Indices: 21791--21835 Score: 56
Period size: 15 Copynumber: 2.9 Consensus size: 16
21781 ATATATATAG
*
21791 ATAAGAAAATGAAATA
1 ATAAAAAAATGAAATA
*
21807 ATAAAAAAA-GTAATA
1 ATAAAAAAATGAAATA
*
21822 ATAAATAAATGAAA
1 ATAAAAAAATGAAA
21836 AGAAACTGCT
Statistics
Matches: 24, Mismatches: 4, Indels: 2
0.80 0.13 0.07
Matches are distributed among these distances:
15 13 0.54
16 11 0.46
ACGTcount: A:0.71, C:0.00, G:0.09, T:0.20
Consensus pattern (16 bp):
ATAAAAAAATGAAATA
Found at i:23550 original size:33 final size:33
Alignment explanation
Indices: 23508--23575 Score: 91
Period size: 33 Copynumber: 2.1 Consensus size: 33
23498 AGATTTTGTG
*
23508 TTTCAAGAGAAACTATCTCAAGGGAGACAAAAT
1 TTTCAAGAGAAACTATCTCAAGAGAGACAAAAT
* * * *
23541 TTTCAAGAGAAATTGTCTCGAGAGAGACAGAAT
1 TTTCAAGAGAAACTATCTCAAGAGAGACAAAAT
23574 TT
1 TT
23576 GTTTAAAGGA
Statistics
Matches: 30, Mismatches: 5, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
33 30 1.00
ACGTcount: A:0.41, C:0.13, G:0.21, T:0.25
Consensus pattern (33 bp):
TTTCAAGAGAAACTATCTCAAGAGAGACAAAAT
Found at i:23641 original size:21 final size:21
Alignment explanation
Indices: 23615--23678 Score: 59
Period size: 21 Copynumber: 3.3 Consensus size: 21
23605 GTTTCAAGGG
23615 AAATTGTCTCAAGAGAGACAA
1 AAATTGTCTCAAGAGAGACAA
*
23636 AAATTGTTTCAAG-G-G----
1 AAATTGTCTCAAGAGAGACAA
*
23651 AAACTGTCTCAAGAGAGACAA
1 AAATTGTCTCAAGAGAGACAA
*
23672 AATTTGT
1 AAATTGT
23679 TTAAAGTTGG
Statistics
Matches: 32, Mismatches: 5, Indels: 12
0.65 0.10 0.24
Matches are distributed among these distances:
15 11 0.34
16 1 0.03
17 1 0.03
19 1 0.03
20 1 0.03
21 17 0.53
ACGTcount: A:0.42, C:0.12, G:0.20, T:0.25
Consensus pattern (21 bp):
AAATTGTCTCAAGAGAGACAA
Found at i:23650 original size:36 final size:36
Alignment explanation
Indices: 23603--23680 Score: 138
Period size: 36 Copynumber: 2.2 Consensus size: 36
23593 TTAAAAGATT
*
23603 TTGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAAA
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAA
*
23639 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAT
1 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAA
23675 TTGTTT
1 TTGTTT
23681 AAAGTTGGGT
Statistics
Matches: 40, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
36 40 1.00
ACGTcount: A:0.37, C:0.12, G:0.22, T:0.29
Consensus pattern (36 bp):
TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAAA
Found at i:23668 original size:101 final size:102
Alignment explanation
Indices: 23437--23684 Score: 290
Period size: 101 Copynumber: 2.5 Consensus size: 102
23427 AAGATATTTG
* * * * * * *
23437 TTGTTTCATGAGAAACGGTCTCAAG-GTAAACAAAATTTTGTTTTAAGGGAAATAAATTCAAAGA
1 TTGTTTCAAGAGAAACTGTCTCAAGAG-AGACAAAA-TTTGTTTAAAGGAAAACAAATTAAAAGA
*
23501 TTTTGTGTTTCAAGAGAAACTATCTCAAGGGAGACAAAA
64 TTTTGTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA
* * * *
23540 -T-TTTCAAGAGAAATTGTCTCGAGAGAGACAGAATTTGTTTAAAGGAAAACATATTAAAAGA-T
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAAATTAAAAGATT
* * *
23602 TT-TGTTTCAAGGGAAATTGTCTCAAGAGAGACAAAAA
66 TTGTGTTTCAAGAGAAACTATCTCAAGAGAGAC-AAAA
*
23639 TTGTTTCAAGGGAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAG
1 TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAG
23685 TTGGGTCAAT
Statistics
Matches: 122, Mismatches: 19, Indels: 10
0.81 0.13 0.07
Matches are distributed among these distances:
98 26 0.21
99 7 0.06
100 24 0.20
101 63 0.52
102 2 0.02
ACGTcount: A:0.40, C:0.10, G:0.20, T:0.29
Consensus pattern (102 bp):
TTGTTTCAAGAGAAACTGTCTCAAGAGAGACAAAATTTGTTTAAAGGAAAACAAATTAAAAGATT
TTGTGTTTCAAGAGAAACTATCTCAAGAGAGACAAAA
Found at i:25847 original size:95 final size:95
Alignment explanation
Indices: 25684--25863 Score: 326
Period size: 95 Copynumber: 1.9 Consensus size: 95
25674 ATGTAAAGAC
* *
25684 CTTTATCAGGTTAGCTGAATCTTATCCATAAAGCCGGGGCGTTTAACCAATTGCCTTAGAGGGAC
1 CTTTATCAGGTTAGCTGAATATTATCCATAAAGCCGGGGAGTTTAACCAATTGCCTTAGAGGGAC
25749 AACTCAAGCTTTATTGTATAATATAATCAT
66 AACTCAAGCTTTATTGTATAATATAATCAT
25779 CTTTATCAGGTTAGCTGAATATTATCCATAAAGCCGGGGAGTTTAACCAATTG-CTCTAGAGGGA
1 CTTTATCAGGTTAGCTGAATATTATCCATAAAGCCGGGGAGTTTAACCAATTGCCT-TAGAGGGA
25843 CAACTCAAGCTTTATTGTATA
65 CAACTCAAGCTTTATTGTATA
25864 TAAATAATAT
Statistics
Matches: 82, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
94 2 0.02
95 80 0.98
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.32
Consensus pattern (95 bp):
CTTTATCAGGTTAGCTGAATATTATCCATAAAGCCGGGGAGTTTAACCAATTGCCTTAGAGGGAC
AACTCAAGCTTTATTGTATAATATAATCAT
Found at i:26942 original size:74 final size:75
Alignment explanation
Indices: 26838--27021 Score: 276
Period size: 74 Copynumber: 2.5 Consensus size: 75
26828 CTTGGAGAGT
*
26838 GGGGGGAATCGGTA--CCCC-ATATGGGGAATCGGTTCCCTAAGTGTAAAA-TCAAATATTCCGA
1 GGGGGGAATCGGTACCCCCCGGTATGGGGAATCGGTTCCCTAAGTGTAAAATTCAAATATTCCGA
26899 CCGTTACACA
66 CCGTTACACA
* *
26909 -GGGGGAATCGGTACCCCCTGGGTATGGGGAATCGGTTCCCTAAGTGTAAAATTCAAATATTTCG
1 GGGGGGAATCGGTACCCCC-CGGTATGGGGAATCGGTTCCCTAAGTGTAAAATTCAAATATTCCG
26973 ACCGTTACACA
65 ACCGTTACACA
26984 GGGGGGAATCGGTACCCCCCGG---GGGGAATCGGTTCCCT
1 GGGGGGAATCGGTACCCCCCGGTATGGGGAATCGGTTCCCT
27022 CCGAGCATAC
Statistics
Matches: 103, Mismatches: 4, Indels: 11
0.87 0.03 0.09
Matches are distributed among these distances:
70 13 0.13
72 19 0.18
74 29 0.28
75 24 0.23
76 18 0.17
ACGTcount: A:0.25, C:0.23, G:0.29, T:0.22
Consensus pattern (75 bp):
GGGGGGAATCGGTACCCCCCGGTATGGGGAATCGGTTCCCTAAGTGTAAAATTCAAATATTCCGA
CCGTTACACA
Found at i:29854 original size:31 final size:31
Alignment explanation
Indices: 29818--29876 Score: 91
Period size: 31 Copynumber: 1.9 Consensus size: 31
29808 AACTTAAAAG
* *
29818 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
29849 AGTTTTATAATACTGAAATTTAAATAAT
1 AGTTTTACAATACTGAAATTTAAATAAT
29877 CCATACAACT
Statistics
Matches: 25, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
31 25 1.00
ACGTcount: A:0.41, C:0.05, G:0.10, T:0.44
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:29927 original size:22 final size:22
Alignment explanation
Indices: 29901--29945 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
29891 TAATAAATTA
29901 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
29923 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
29945 T
1 T
29946 AATAAATTAT
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.49, C:0.13, G:0.00, T:0.38
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:29949 original size:18 final size:20
Alignment explanation
Indices: 29899--30108 Score: 72
Period size: 22 Copynumber: 11.1 Consensus size: 20
29889 AATAATAAAT
29899 TATTTAAAATAAATCAATCCA
1 TATTT-AAATAAATCAATCCA
29920 TATTTTAAAATAAATCAATCCA
1 TA-TTT-AAATAAATCAATCCA
29942 TA-TT-AATAAAT---T--A
1 TATTTAAATAAATCAATCCA
*
29955 T-TTAAAATAAATCAATCCA
1 TATTTAAATAAATCAATCCA
**
29974 TACAACTAAAATAATAAATCAATCCA
1 T---A-T-TTA-AATAAATCAATCCA
30000 TATTTTAAAATAAATCAATCCA
1 TA-TTT-AAATAAATCAATCCA
*
30022 TA--CAAATAAAT---T--A
1 TATTTAAATAAATCAATCCA
*
30035 T-TTAAAATAAATCAATCCA
1 TATTTAAATAAATCAATCCA
*
30054 TA-CT-AATAAAT---T--A
1 TATTTAAATAAATCAATCCA
*
30067 T-TTAAAATAAATCAATCCA
1 TATTTAAATAAATCAATCCA
30086 TATTTTAAAATAAATCAATCCA
1 TA-TTT-AAATAAATCAATCCA
30108 T
1 T
30109 CCTAATAAAT
Statistics
Matches: 143, Mismatches: 12, Indels: 67
0.64 0.05 0.30
Matches are distributed among these distances:
13 7 0.05
14 22 0.15
15 3 0.02
17 3 0.02
18 22 0.15
19 6 0.04
20 2 0.01
21 4 0.03
22 53 0.37
23 3 0.02
24 1 0.01
25 2 0.01
26 15 0.10
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (20 bp):
TATTTAAATAAATCAATCCA
Found at i:29952 original size:22 final size:22
Alignment explanation
Indices: 29899--29951 Score: 81
Period size: 22 Copynumber: 2.4 Consensus size: 22
29889 AATAATAAAT
29899 TATT-TAAAATAAATCAATCCA
1 TATTATAAAATAAATCAATCCA
*
29920 TATTTTAAAATAAATCAATCCA
1 TATTATAAAATAAATCAATCCA
29942 TATTAATAAA
1 TATT-ATAAA
29952 TTATTTAAAA
Statistics
Matches: 29, Mismatches: 1, Indels: 2
0.91 0.03 0.06
Matches are distributed among these distances:
21 4 0.14
22 21 0.72
23 4 0.14
ACGTcount: A:0.53, C:0.11, G:0.00, T:0.36
Consensus pattern (22 bp):
TATTATAAAATAAATCAATCCA
Found at i:29955 original size:54 final size:54
Alignment explanation
Indices: 29891--31522 Score: 817
Period size: 54 Copynumber: 30.0 Consensus size: 54
29881 ACAACTACAA
29891 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* **
29945 TAATAAATTATTTAAAATAAATCAATCCATACAACTAAAATAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAT
* * ** * ** ** *
30003 T-TTAAAATAAAT-CAATCCATACAAATAAAT-TATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
**
30057 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATCC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* * *** * *
30111 TAATAAATTATTTAAAATAATTCAATCAATACAACTACAAT-AATAAAT-CA-AT
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATAT
* * * *
30163 T--TATA-T-TTTAAAATAAATCAATCCATACAAATAAATTATTTAAGATAAATCAATCAATAC
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAT
30223 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCAT-T
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* * *
30276 CAAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCTATAC
1 -TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* **
30331 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAT
* * ** * ** **
30389 T-TTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
* * *
30442 CAACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* * * * ** *
30491 AAATAAATTATTTAAAATAAATCAATCCATA--CT--AATAAATTATTTAAAAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* * * * * ** *
30541 AAATCAATCTATATTTTAAAATAAATCAATCCATA--CT--AATAAATTATTTAAAAT
1 TAAT-AA-AT-TA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* * * * * ** *
30595 AAATCAATCCATATTTTAAAATAAATCAATCCATA--CT--AATAAATTATTTAAAAT
1 TAATAAAT---TA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* * ** *
30649 AAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT-AATTCA-AT
1 TAATAAAT---TA-TTTAAAATAAATCAATCCATA-TTTTAAA--A--T-AAATCAATCCATAT
* * * * *
30711 CAATACAACTA--CAATAATAAATCAATTCATATTTTAAAATAAATCAATCCATAC
1 TAATA-AATTATTTAA-AATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
*
30765 AAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTTTAAAA-AAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAAT-C---C--AT--ATTTTAAAATAAATCAATCCATAT
* ** * ** ** *
30826 T--TAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATTCATAT
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
* * ** * ** ** *
30879 T-TTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
*
30933 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* **
30987 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAT
* * ** * ** ** *
31045 T-TTAAAATAAAT-CAATCCATACAAATAAAT-TATTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
*
31099 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
*
31153 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* **
31207 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCAT---ATTTTAA-AATAAATCAATCCATAT
* * ** * ** **
31265 T-TTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
* * ** * ** **
31319 T-TTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATA-
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATAT
* * *
31372 CAACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
* *
31421 TAATAAATCATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAC
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
*
31475 TAATAAATTATTT----TAAATAAAT---TATTTTAAAATAAATCAATCCATAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
31522 T
1 T
31523 TTATAATAAT
Statistics
Matches: 1284, Mismatches: 183, Indels: 229
0.76 0.11 0.14
Matches are distributed among these distances:
47 25 0.02
48 73 0.06
49 10 0.01
50 38 0.03
51 5 0.00
52 17 0.01
53 31 0.02
54 737 0.57
55 54 0.04
56 37 0.03
57 60 0.05
58 117 0.09
59 10 0.01
60 10 0.01
61 14 0.01
62 17 0.01
63 9 0.01
64 20 0.02
ACGTcount: A:0.53, C:0.13, G:0.00, T:0.34
Consensus pattern (54 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATAT
Found at i:29961 original size:32 final size:31
Alignment explanation
Indices: 29923--31496 Score: 779
Period size: 32 Copynumber: 57.4 Consensus size: 31
29913 CAATCCATAT
29923 TTTAAAATAAATCAATCCATATTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
*
29955 TTTAAAATAAATCAATCCATACAACTAAA--A
1 TTTAAAATAAATCAATCCATATAA-TAAATTA
29985 --T--AATAAATCAATCC--AT-AT------
1 TTTAAAATAAATCAATCCATATAATAAATTA
*
30003 TTTAAAATAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30035 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30067 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
*
30089 TTTAAAATAAATCAATCCATCCTAATAAATTA
1 TTTAAAATAAATCAATCCAT-ATAATAAATTA
* * *
30121 TTTAAAATAATTCAAT-CA-AT-A-CAACTA
1 TTTAAAATAAATCAATCCATATAATAAATTA
* ** **
30148 --CAATAATAAATCAATTTATATTTTAAA--A
1 TTTAA-AATAAATCAATCCATATAATAAATTA
*
30176 -------TAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* *
30201 TTTAAGATAAATCAATCAATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30233 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
30255 TTTAAAATAAATCAATCCAT-TCAAATAAATTA
1 TTTAAAATAAATCAATCCATAT--AATAAATTA
30287 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
*
30309 TTTAAAATAAATCAATCTATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* *
30341 TTTAAAATAAATCAATCCATACAACTACA--A
1 TTTAAAATAAATCAATCCATATAA-TAAATTA
30371 --T--AATAAATCAATCC--AT-AT------
1 TTTAAAATAAATCAATCCATATAATAAATTA
30389 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* *
30421 TTTAAAATAAATCAATCCATACAACTACA--A
1 TTTAAAATAAATCAATCCATATAA-TAAATTA
30451 --T--AATAAATCAATCC--AT-AT------
1 TTTAAAATAAATCAATCCATATAATAAATTA
*
30469 TTTAAAATAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30501 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30533 TTTAAAATAAATCAAT-C---T-AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
30555 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30587 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
30609 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30641 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
30663 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* * *
30695 TTTAAAATAATTCAAT-CA-AT-A-CAACTA
1 TTTAAAATAAATCAATCCATATAATAAATTA
* * **
30722 --CAATAATAAATCAATTCATATTTTAAA--A
1 TTTAA-AATAAATCAATCCATATAATAAATTA
*
30750 -------TAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30775 TTTAAAATAAATCAATCCATACTAATAAA-T-
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30805 TTTAAAA-AAATCAATCC---------A-TA
1 TTTAAAATAAATCAATCCATATAATAAATTA
30825 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
*
30857 TTTAAAATAAATC-A---AT-TCAT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
30879 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30911 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
30943 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
30965 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* *
30997 TTTAAAATAAATCAATCCATACAACTACA--A
1 TTTAAAATAAATCAATCCATATAA-TAAATTA
31027 --T--AATAAATCAATCC--AT-AT------
1 TTTAAAATAAATCAATCCATATAATAAATTA
*
31045 TTTAAAATAAATCAATCCATACAAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
31077 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
31109 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
31131 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
31163 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
31185 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* *
31217 TTTAAAATAAATCAATCCATACAACTACA--A
1 TTTAAAATAAATCAATCCATATAA-TAAATTA
31247 --T--AATAAATCAATCC--AT-AT------
1 TTTAAAATAAATCAATCCATATAATAAATTA
31265 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
31297 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
31319 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
* *
31351 TTTAAAATAAATCAATCCATACAACTACA--A
1 TTTAAAATAAATCAATCCATATAA-TAAATTA
31381 --T--AATAAATCAATCC--AT-AT------
1 TTTAAAATAAATCAATCCATATAATAAATTA
*
31399 TTTAAAATAAATCAATCCATACTAATAAATCA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
31431 TTTAAAATAAATCAATCC-----AT--A-T-
1 TTTAAAATAAATCAATCCATATAATAAATTA
31453 TTTAAAATAAATCAATCCATACTAATAAATTA
1 TTTAAAATAAATCAATCCATA-TAATAAATTA
*
31485 TTTTAAATAAAT
1 TTTAAAATAAAT
31497 TATTTTAAAA
Statistics
Matches: 1230, Mismatches: 59, Indels: 506
0.69 0.03 0.28
Matches are distributed among these distances:
19 2 0.00
20 13 0.01
21 10 0.01
22 317 0.26
23 27 0.02
24 24 0.02
25 9 0.01
26 137 0.11
27 13 0.01
28 41 0.03
29 12 0.01
30 30 0.02
31 32 0.03
32 563 0.46
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (31 bp):
TTTAAAATAAATCAATCCATATAATAAATTA
Found at i:30078 original size:166 final size:167
Alignment explanation
Indices: 29891--31469 Score: 1166
Period size: 166 Copynumber: 9.6 Consensus size: 167
29881 ACAACTACAA
*
29891 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
*
29956 TTAAAATAAATCAATCCATACAACTAAAAT-AATAAATCAATCCATATTTTAAAATAAATCAATC
66 TTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAATCCATATTTTAAAATAAATCAATC
30020 CATACAAATAAATTATTTAAAATAAATCAATCCATAC
131 CATACAAATAAATTATTTAAAATAAATCAATCCATAC
*
30057 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATCCTAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
* * * * **
30122 TTAAAATAATTCAATCAATACAACTACAAT-AATAAATCAATTTATATTTTAAAATAAATCAATC
66 TTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAATCCATATTTTAAAATAAATCAATC
* *
30186 CATACAAATAAATTATTTAAGATAAATCAATCAATAC
131 CATACAAATAAATTATTTAAAATAAATCAATCCATAC
* *
30223 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATTCAAATAAATTAT
1 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
** * * *
30288 TTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAA
66 TTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAAT-C-CAT--A-T-TTTAAAATAAA
* *
30352 TCAATCCATACAACTACA--A--T--AATAAATCAATCCATA-
125 TCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
** * ** * ** ** *
30388 TTTTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATAC-AACTACA
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATACTAA-TAAA
** * * *
30450 --A--T--AATAAATCAATCCATA-TTTTAAAATAAATCAATCCATACAAATAAATTATTTAAAA
62 TTATTTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAAT-C-CAT--A-T-TTTAAAA
*
30508 TAAATCAATCCATACTAATAAATTATTTAAAATAAATC-A---AT-C
121 TAAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
** * ** * ** **
30550 T-AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT-C-AATCCA-T
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAAT-CAATCCATACTAATAAATT
30607 ATTTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAAT
64 A-TTTAAAATAAATCAATCCATAC-AATTAAA--A--T-AAATAAATCAATCCATATTTTAAAAT
* * *
30671 AAATCAATCCATACTAATAAATTATTTAAAATAATTCAATCAATAC
122 AAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
* * *
30717 -AACTACA--A--T--AATAAATCAATTCATATTTTAAAATAAATCAATCCATACAAATAAATTA
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
* *
30775 TTTAAAATAAATCAATCCATACTAA-TAAATTTTAAAAAAATCAATCCATA-TTTAAAATAAATC
65 TTTAAAATAAATCAATCCATAC-AATTAAA--ATAAATAAATCAATCCATATTTTAAAATAAATC
* *
30838 AATCCATACTAATAAATTATTTAAAATAAATCAATTCATA-
127 AATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
** * ** * ** **
30878 TTTTAAAATAAAT-CAATCCATACTAATAAAT-TATTTAAAATAAATCAATCCATACTAATAAAT
1 TAATAAATTATTTAAAATAAAT-C-AATCCATAT-TTTAAAATAAATCAATCCATACTAATAAAT
** * * *
30941 TATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAAT
63 TATTTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAAT-C-CAT--A-T-TTTAAAAT
* * *
31005 AAATCAATCCATACAACTACA--A--T--AATAAATCAATCCATATTT
122 AAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATA--C
* * ** * * *
31047 TAAAATAAATCAATCCATACAAATAAAT---TA-TTTAAAATAAATCAATCCATACTAATAAATT
1 T--AATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATT
** * * *
31108 ATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATA
64 ATTTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAAT-C-CAT--A-T-TTTAAAATA
31172 AATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATAC
123 AATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
*** * * * *
31207 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAAT-C-CAT--A-T-
1 TAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATCCATACTAATAAATTA
31265 TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
65 TTTAAAATAAATCAATCCATAC-AATTAAA--A--T-AAATAAATCAATCCATATTTTAAAATAA
*
31329 ATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
124 ATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATAC
* *
31373 -AACTACA--A--T--AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATCA
1 TAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
** *
31431 TTTAAAATAAATCAATCCATA-TTTTAAAATAAATCAATC
65 TTTAAAATAAATCAATCCATACAATTAAAATAAATAAATC
31470 CATACTAATA
Statistics
Matches: 1161, Mismatches: 144, Indels: 222
0.76 0.09 0.15
Matches are distributed among these distances:
156 45 0.04
157 20 0.02
158 33 0.03
159 7 0.01
160 115 0.10
161 11 0.01
162 156 0.13
163 29 0.02
164 17 0.01
165 47 0.04
166 521 0.45
167 15 0.01
168 73 0.06
169 2 0.00
170 7 0.01
171 7 0.01
172 56 0.05
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (167 bp):
TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
TTAAAATAAATCAATCCATACAATTAAAATAAATAAATCAATCCATATTTTAAAATAAATCAATC
CATACAAATAAATTATTTAAAATAAATCAATCCATAC
Found at i:30093 original size:22 final size:22
Alignment explanation
Indices: 30067--30108 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
30057 TAATAAATTA
30067 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
30089 TTTAAAATAAATCAATCCAT
1 TTTAAAATAAATCAATCCAT
30109 CCTAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:30118 original size:22 final size:22
Alignment explanation
Indices: 30069--30117 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
30059 ATAAATTATT
**
30069 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
30091 TAAAATAAATCAATCCATCCTAA
1 TAAAATAAATCAATCCAT-ATAA
30114 TAAA
1 TAAA
30118 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.53, C:0.16, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:30259 original size:22 final size:22
Alignment explanation
Indices: 30233--30274 Score: 84
Period size: 22 Copynumber: 1.9 Consensus size: 22
30223 TAATAAATTA
30233 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
30255 TTTAAAATAAATCAATCCAT
1 TTTAAAATAAATCAATCCAT
30275 TCAAATAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.50, C:0.14, G:0.00, T:0.36
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:30264 original size:220 final size:220
Alignment explanation
Indices: 30035--31451 Score: 1762
Period size: 220 Copynumber: 6.5 Consensus size: 220
30025 AAATAAATTA
30035 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
* * * **
30100 TCAATCCATCCTAATAAATTATTTAAAATAATTCAATCAATACAACTACAATAATAAATCAATTT
66 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCC
* * *
30165 ATATTTTAAAATAAATCAATCCATACAAATAAATTATTTAAGATAAATCAATCAATACTAATAAA
131 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAA
30230 TTATTTAAAATAAATCAATCCATAT
196 TTATTTAAAATAAATCAATCCATAT
* *
30255 TTTAAAATAAATCAATCCATTCAAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
*
30320 TCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCC
66 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCC
*
30385 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTAC
131 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAA-TAA
30449 A--A--T--AATAAATCAATCCATAT
195 ATTATTTAAAATAAATCAATCCATAT
* **
30469 TTTAAAATAAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTAT
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAA--A-
* * *
30534 TTAAAATAAATCAAT-CT-AT--A-T-TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAA
62 -T-AAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTACA--A--T--
30592 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
118 AATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAAT
** * ** * ** **
30657 CCATA-TTTTAAAATAAAT-CAATCCATACTAATAAAT-T
183 CCATACTAATAAATTATTTAAAATAAAT-C-AATCCATAT
* * * *
30694 ATTTAAAATAATTCAATCAATAC-AACTACA--A--T--AATAAATCAATTCATATTTTAAAATA
1 -TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATA
* *
30752 AATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATACTAA-TA-AATTTTAAAAAAA
64 AATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC-AACTACAA---T-AATAAA
*
30815 TCAATCCATA-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATTCATA-
124 TCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATAC
** * ** * ** **
30878 TTTTAAAATAAAT-CAATCCATACTAATAAAT-T
189 TAATAAATTATTTAAAATAAAT-C-AATCCATAT
30910 ATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
1 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAA
30975 ATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATC
65 ATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATC
*
31040 CATATTTTAAAATAAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATACTAATAA
130 CATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAA
31105 ATTATTTAAAATAAATCAATCCATAT
195 ATTATTTAAAATAAATCAATCCATAT
31131 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
1 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
31196 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCC
66 TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCC
**
31261 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAA
131 ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAA
* ** * ** **
31325 ATAAAT-CAATCCATACTAATAAAT-T
196 TTATTTAAAATAAAT-C-AATCCATAT
*
31350 ATTTAAAATAAATCAATCCATAC-AACTACA--A--T--AATAAATCAATCCATATTTTAAAATA
1 -TTTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATATTTTAAAATA
*
31408 AATCAATCCATACTAATAAATCATTTAAAATAAATCAATCCATA
64 AATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA
31452 TTTTAAAATA
Statistics
Matches: 1082, Mismatches: 67, Indels: 102
0.86 0.05 0.08
Matches are distributed among these distances:
214 173 0.16
215 10 0.01
216 114 0.11
217 21 0.02
218 15 0.01
219 42 0.04
220 576 0.53
221 13 0.01
222 77 0.07
223 3 0.00
224 6 0.01
225 4 0.00
226 28 0.03
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (220 bp):
TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAA
TCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAATAATAAATCAATCC
ATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTAATAAA
TTATTTAAAATAAATCAATCCATAT
Found at i:30284 original size:22 final size:22
Alignment explanation
Indices: 30236--30284 Score: 55
Period size: 22 Copynumber: 2.2 Consensus size: 22
30226 TAAATTATTT
***
30236 AAAATAAATCAATCCATATTTT
1 AAAATAAATCAATCCATATCAA
30258 AAAATAAATCAATCCAT-TCAA
1 AAAATAAATCAATCCATATCAA
30279 ATAAAT
1 A-AAAT
30285 TATTTAAAAT
Statistics
Matches: 23, Mismatches: 3, Indels: 2
0.82 0.11 0.07
Matches are distributed among these distances:
21 2 0.09
22 21 0.91
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
AAAATAAATCAATCCATATCAA
Found at i:30338 original size:22 final size:22
Alignment explanation
Indices: 30289--30337 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
30279 ATAAATTATT
**
30289 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
*
30311 TAAAATAAATCAATCTATACTAA
1 TAAAATAAATCAATCCATA-TAA
30334 TAAA
1 TAAA
30338 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:30418 original size:22 final size:23
Alignment explanation
Indices: 30343--30417 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
30333 ATAAATTATT
30343 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
**
30365 CTACAATAATAAATCAATCCATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
30391 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
30414 TAAA
1 TAAA
30418 TTATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.37
23 8 0.19
25 3 0.07
26 16 0.37
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:30498 original size:22 final size:22
Alignment explanation
Indices: 30425--30498 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
30415 AAATTATTTA
*
30425 AAATAAATCAATCCATACAACTACA
1 AAATAAATCAATCCATACAA--A-T
***
30450 ATAATAAATCAATCCATA-TTTT
1 A-AATAAATCAATCCATACAAAT
30472 AAAATAAATCAATCCATACAAAT
1 -AAATAAATCAATCCATACAAAT
30495 AAAT
1 AAAT
30499 TATTTAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
22 20 0.51
23 2 0.05
25 1 0.03
26 16 0.41
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATAAATCAATCCATACAAAT
Found at i:30584 original size:22 final size:22
Alignment explanation
Indices: 30535--30583 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
30525 ATAAATTATT
* **
30535 TAAAATAAATCAATCTATATTT
1 TAAAATAAATCAATCCATATAA
30557 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
30580 TAAA
1 TAAA
30584 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:30613 original size:22 final size:22
Alignment explanation
Indices: 30587--30629 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
30577 TAATAAATTA
30587 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
30609 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
30630 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:30638 original size:22 final size:22
Alignment explanation
Indices: 30589--30637 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
30579 ATAAATTATT
**
30589 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
30611 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
30634 TAAA
1 TAAA
30638 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:30667 original size:22 final size:22
Alignment explanation
Indices: 30641--30683 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
30631 TAATAAATTA
30641 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
30663 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
30684 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:30692 original size:22 final size:22
Alignment explanation
Indices: 30643--30691 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
30633 ATAAATTATT
**
30643 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
30665 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
30688 TAAA
1 TAAA
30692 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:30836 original size:21 final size:20
Alignment explanation
Indices: 30805--30845 Score: 73
Period size: 21 Copynumber: 2.0 Consensus size: 20
30795 ACTAATAAAT
30805 TTTAAAAAAATCAATCCATA
1 TTTAAAAAAATCAATCCATA
30825 TTTAAAATAAATCAATCCATA
1 TTTAAAA-AAATCAATCCATA
30846 CTAATAAATT
Statistics
Matches: 20, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
20 7 0.35
21 13 0.65
ACGTcount: A:0.54, C:0.15, G:0.00, T:0.32
Consensus pattern (20 bp):
TTTAAAAAAATCAATCCATA
Found at i:30883 original size:22 final size:22
Alignment explanation
Indices: 30857--30899 Score: 77
Period size: 22 Copynumber: 2.0 Consensus size: 22
30847 TAATAAATTA
*
30857 TTTAAAATAAATCAATTCATAT
1 TTTAAAATAAATCAATCCATAT
30879 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
30900 CTAATAAATT
Statistics
Matches: 20, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
22 20 1.00
ACGTcount: A:0.51, C:0.12, G:0.00, T:0.37
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:30908 original size:22 final size:22
Alignment explanation
Indices: 30859--30907 Score: 62
Period size: 22 Copynumber: 2.2 Consensus size: 22
30849 ATAAATTATT
* **
30859 TAAAATAAATCAATTCATATTT
1 TAAAATAAATCAATCCATATAA
30881 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
30904 TAAA
1 TAAA
30908 TTATTTAAAA
Statistics
Matches: 23, Mismatches: 3, Indels: 1
0.85 0.11 0.04
Matches are distributed among these distances:
22 18 0.78
23 5 0.22
ACGTcount: A:0.55, C:0.12, G:0.00, T:0.33
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:30969 original size:22 final size:22
Alignment explanation
Indices: 30943--30985 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
30933 TAATAAATTA
30943 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
30965 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
30986 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:30994 original size:22 final size:22
Alignment explanation
Indices: 30945--30993 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
30935 ATAAATTATT
**
30945 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
30967 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
30990 TAAA
1 TAAA
30994 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:31074 original size:22 final size:22
Alignment explanation
Indices: 31001--31074 Score: 60
Period size: 22 Copynumber: 3.2 Consensus size: 22
30991 AAATTATTTA
*
31001 AAATAAATCAATCCATACAACTACA
1 AAATAAATCAATCCATACAA--A-T
***
31026 ATAATAAATCAATCCATA-TTTT
1 A-AATAAATCAATCCATACAAAT
31048 AAAATAAATCAATCCATACAAAT
1 -AAATAAATCAATCCATACAAAT
31071 AAAT
1 AAAT
31075 TATTTAAAAT
Statistics
Matches: 39, Mismatches: 7, Indels: 9
0.71 0.13 0.16
Matches are distributed among these distances:
22 20 0.51
23 2 0.05
25 1 0.03
26 16 0.41
ACGTcount: A:0.55, C:0.18, G:0.00, T:0.27
Consensus pattern (22 bp):
AAATAAATCAATCCATACAAAT
Found at i:31077 original size:134 final size:134
Alignment explanation
Indices: 29891--31496 Score: 914
Period size: 134 Copynumber: 11.8 Consensus size: 134
29881 ACAACTACAA
*** * **
29891 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATATTAATAAATTAT
1 TAATAAA-TATTTAAAATAAATCAATCCATACAATAAAATAAATAAAT-CA-ATCCAT--A-T-T
*
29956 TTAAAATAAATCAATCCATAC-AACTAAA--A--T--AATAAATCAATCCATA-TTTTAAAATAA
59 TTAAAATAAATCAATCCATACTAA-TAAATTATTTAAAATAAATCAATCCATACTATTAAAATAA
*
30013 ATCAATCCATAC
123 ATAAATCCATAC
*
30025 AAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATT
1 TAATAAA-TATTTAAAATAAATCAATCCATAC-AATAAA--A--T-AAATAAATCAATCCATATT
* * * * * *
30090 TTAAAATAAATCAATCCATCCTAATAAATTATTTAAAATAATTCAATCAATACAACTACAAT-AA
59 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATAAA
30154 TAAAT-CA-A-
124 TAAATCCATAC
* * * *
30162 T-TTATAT-TTTAAAATAAATCAATCCATACAAATAAATTATTTAAGATAAATCAATCAATACTA
1 TAATAAATATTTAAAATAAATCAATCCATAC-AATAAA--A--TAA-ATAAATCAATCCATA-TT
* * ** * ** ** * * * *
30225 ATAAATTATTTAAAATAAAT-C-AATCCA-TATTTTAAAATAAATCAATCCATTCAAATAAATTA
59 TTAAAATAAAT-CAATCCATACTAATAAATTA-TTTAAAATAAATCAATCCATACTATTAAAATA
** **
30287 TTTAAAATAAAT-C
122 AAT-AAATCCATAC
** * *
30300 -AATCCATATTTTAAAATAAATCAATCTATACTAATAAATTATTTAAAATAAATCAATCCATACA
1 TAATAAATA-TTTAAAATAAATCAATCCATAC-AATAAA--A--T-AAATAAATCAATCCATA-T
** * * * * *
30364 ACTACAAT-AATAAATCAAT-C-CAT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTAT
58 TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAA--A-
*
30422 TTAAAATAAATCAAT-C
120 -T-AAATAAATCCATAC
* * *** * * *
30438 -CATACAACTA--CAATAATAAATCAATCCATATTTTAAAATAAATCAATCCATACAAATAAATT
1 TAATA-AA-TATTTAA-AATAAATCAATCCATACAATAAAATAAATAAATCAAT-C-CAT--A-T
* *
30500 ATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCTATA-TTTTAAAATA
58 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATA
*
30564 AATCAATCCATAC
122 AATAAATCCATAC
*** * * *
30577 TAATAAATTATTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAA-TATTTAAAATAAATCAATCCATACAATAAAATAAATAAATCAAT-C-CAT--A-T-T
*
30642 TTAAAATAAATCAAT-C---C--AT--A-T-TTTAAAATAAATCAATCCATACTAATAAATTATT
59 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAA--A--
* *
30697 TAAAATAATTCAAT-C
120 T-AAATAAATCCATAC
* * *** * * *
30712 -AATACAACTA--CAATAATAAATCAATTCATATTTTAAAATAAATCAATCCATACAAATAAATT
1 TAATA-AA-TATTTAA-AATAAATCAATCCATACAATAAAATAAATAAATCAAT-C-CAT--A-T
30774 ATTTAAAATAAATCAATCCATACTAATAAA-T-TTTAAAA-AAATCAATCCATA-T-TTAAAATA
58 -TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATA
*
30834 AATCAATCCATAC
122 AATAAATCCATAC
* *** * * *
30847 TAATAAATTATTTAAAATAAATCAATTCATATTTTAAAATAAATCAATCCATACTAATAAATTAT
1 TAATAAA-TATTTAAAATAAATCAATCCATACAATAAAATAAATAAATCAAT-C-CAT--A-T-T
*
30912 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATA-TTTTAAAATAAA
59 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATAAA
*
30976 TCAATCCATAC
124 TAAATCCATAC
*
30987 TAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AATAAATCAATCCATATTTTAAA
1 TAATAAA-TATTTAAAATAAATCAATCCATACAA-TAAAATAAATAAATCAATCCATATTTTAAA
* * * **
31051 ATAAATCAATCCATACAAATAAATTATTTAAAATAAATCAATCCATACTAATAAATTATTTAAAA
64 ATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATAAAT-AAA
**
31116 TAAAT-C
128 TCCATAC
**
31122 -AATCCATATTTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATT
1 TAATAAATA-TTTAAAATAAATCAATCCATAC-AATAAA--A--T-AAATAAATCAATCCATATT
* * *
31186 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AA
59 TTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATAAA
*
31250 TAAATCAAT-C
124 TAAATCCATAC
*
31260 -CAT--AT-TTTAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATATTT
1 TAATAAATATTTAAAATAAATCAATCCATAC-AATAAA--A--T-AAATAAATCAATCCATATTT
* * *
31321 TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACAACTACAAT-AAT
60 TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATAAAT
*
31385 AAATCAAT-C
125 AAATCCATAC
*
31394 -CAT--AT-TTTAAAATAAATCAATCCATACTAATAAATCATTTAAAATAAATCAATCCATATTT
1 TAATAAATATTTAAAATAAATCAATCCATAC-AATAAA--A--T-AAATAAATCAATCCATATTT
*
31455 TAAAATAAATCAATCCATACTAATAAATTATTTTAAATAAAT
60 TAAAATAAATCAATCCATACTAATAAATTATTTAAAATAAAT
31497 TATTTTAAAA
Statistics
Matches: 1251, Mismatches: 135, Indels: 172
0.80 0.09 0.11
Matches are distributed among these distances:
130 20 0.02
131 6 0.00
132 11 0.01
133 11 0.01
134 550 0.44
135 44 0.04
136 117 0.09
137 17 0.01
138 85 0.07
139 37 0.03
140 289 0.23
141 28 0.02
142 10 0.01
143 6 0.00
144 20 0.02
ACGTcount: A:0.53, C:0.14, G:0.00, T:0.34
Consensus pattern (134 bp):
TAATAAATATTTAAAATAAATCAATCCATACAATAAAATAAATAAATCAATCCATATTTTAAAAT
AAATCAATCCATACTAATAAATTATTTAAAATAAATCAATCCATACTATTAAAATAAATAAATCC
ATAC
Found at i:31135 original size:22 final size:22
Alignment explanation
Indices: 31109--31151 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
31099 TAATAAATTA
31109 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
31131 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
31152 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:31160 original size:22 final size:22
Alignment explanation
Indices: 31111--31159 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
31101 ATAAATTATT
**
31111 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
31133 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
31156 TAAA
1 TAAA
31160 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:31189 original size:22 final size:22
Alignment explanation
Indices: 31163--31205 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
31153 TAATAAATTA
31163 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
31185 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
31206 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:31214 original size:22 final size:22
Alignment explanation
Indices: 31165--31213 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
31155 ATAAATTATT
**
31165 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
31187 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
31210 TAAA
1 TAAA
31214 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:31294 original size:22 final size:23
Alignment explanation
Indices: 31219--31293 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
31209 ATAAATTATT
31219 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
**
31241 CTACAATAATAAATCAATCCATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
31267 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
31290 TAAA
1 TAAA
31294 TTATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.37
23 8 0.19
25 3 0.07
26 16 0.37
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:31323 original size:22 final size:22
Alignment explanation
Indices: 31297--31339 Score: 86
Period size: 22 Copynumber: 2.0 Consensus size: 22
31287 TAATAAATTA
31297 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
31319 TTTAAAATAAATCAATCCATA
1 TTTAAAATAAATCAATCCATA
31340 CTAATAAATT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 21 1.00
ACGTcount: A:0.51, C:0.14, G:0.00, T:0.35
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:31348 original size:22 final size:22
Alignment explanation
Indices: 31299--31347 Score: 71
Period size: 22 Copynumber: 2.2 Consensus size: 22
31289 ATAAATTATT
**
31299 TAAAATAAATCAATCCATATTT
1 TAAAATAAATCAATCCATATAA
31321 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATA-TAA
31344 TAAA
1 TAAA
31348 TTATTTAAAA
Statistics
Matches: 24, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
22 19 0.79
23 5 0.21
ACGTcount: A:0.55, C:0.14, G:0.00, T:0.31
Consensus pattern (22 bp):
TAAAATAAATCAATCCATATAA
Found at i:31428 original size:22 final size:23
Alignment explanation
Indices: 31353--31427 Score: 82
Period size: 22 Copynumber: 3.2 Consensus size: 23
31343 ATAAATTATT
31353 TAAAATAAATCAATCCATAC-AA
1 TAAAATAAATCAATCCATACTAA
**
31375 CTACAATAATAAATCAATCCATA-TTT
1 -T--AA-AATAAATCAATCCATACTAA
31401 TAAAATAAATCAATCCATACTAA
1 TAAAATAAATCAATCCATACTAA
31424 TAAA
1 TAAA
31428 TCATTTAAAA
Statistics
Matches: 43, Mismatches: 4, Indels: 10
0.75 0.07 0.18
Matches are distributed among these distances:
22 16 0.37
23 8 0.19
25 3 0.07
26 16 0.37
ACGTcount: A:0.55, C:0.17, G:0.00, T:0.28
Consensus pattern (23 bp):
TAAAATAAATCAATCCATACTAA
Found at i:31457 original size:22 final size:22
Alignment explanation
Indices: 31431--31531 Score: 94
Period size: 22 Copynumber: 4.5 Consensus size: 22
31421 TAATAAATCA
31431 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
31453 TTTAAAATAAATCAATCCATACT
1 TTTAAAATAAATCAATCCATA-T
** * ** * **
31476 AATAAATTATTTTAAATAAATTAT
1 TTTAAAATA-AATCAATCCA-TAT
31500 TTTAAAATAAATCAATCCATAT
1 TTTAAAATAAATCAATCCATAT
*
31522 TTTATAATAA
1 TTTAAAATAA
31532 TTTATTTTAA
Statistics
Matches: 59, Mismatches: 17, Indels: 6
0.72 0.21 0.07
Matches are distributed among these distances:
22 33 0.56
23 12 0.20
24 12 0.20
25 2 0.03
ACGTcount: A:0.50, C:0.10, G:0.00, T:0.40
Consensus pattern (22 bp):
TTTAAAATAAATCAATCCATAT
Found at i:31518 original size:69 final size:67
Alignment explanation
Indices: 31421--31578 Score: 203
Period size: 69 Copynumber: 2.3 Consensus size: 67
31411 CAATCCATAC
* *
31421 TAATAAATCA-TTTAAAATAAATCAATCCATATTTTAAAATAAATCAATCCATACTAATAAATTA
1 TAATAAATTATTTTAAAATAAATCAATCCATATTTTAAAAT-AATCAAT-CATA-AAATAAATTA
31485 TTTTA
63 TTTTA
* ** **
31490 -AATAAATTATTTTAAAATAAATCAATCCATATTTTATAATAATTTATTTTAAAATAAATTATTT
1 TAATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATCATAAAATAAATTATTT
31554 TA
66 TA
*
31556 TAATAAATTATTTTATAATAAAT
1 TAATAAATTATTTTAAAATAAAT
31579 TATTTTAAAA
Statistics
Matches: 79, Mismatches: 8, Indels: 6
0.85 0.09 0.06
Matches are distributed among these distances:
66 14 0.18
67 23 0.29
68 13 0.16
69 29 0.37
ACGTcount: A:0.50, C:0.07, G:0.00, T:0.43
Consensus pattern (67 bp):
TAATAAATTATTTTAAAATAAATCAATCCATATTTTAAAATAATCAATCATAAAATAAATTATTT
TA
Found at i:31573 original size:12 final size:15
Alignment explanation
Indices: 31475--31593 Score: 132
Period size: 15 Copynumber: 7.5 Consensus size: 15
31465 CAATCCATAC
31475 TAATAAATTATTTTA
1 TAATAAATTATTTTA
31490 -AATAAATTATTTTAAAA
1 TAATAAATTATTTT---A
*
31507 TAAATCAATCCATATTTTA
1 T-AATAAAT---TATTTTA
*
31526 TAATAATTTATTTTA
1 TAATAAATTATTTTA
*
31541 AAATAAATTATTTTA
1 TAATAAATTATTTTA
31556 TAATAAATTATTTTA
1 TAATAAATTATTTTA
31571 TAATAAATTATTTTA
1 TAATAAATTATTTTA
*
31586 AAATAAAT
1 TAATAAAT
31594 AACCTTATTA
Statistics
Matches: 89, Mismatches: 7, Indels: 16
0.79 0.06 0.14
Matches are distributed among these distances:
14 13 0.15
15 56 0.63
17 1 0.01
18 5 0.06
19 8 0.09
22 6 0.07
ACGTcount: A:0.50, C:0.03, G:0.00, T:0.48
Consensus pattern (15 bp):
TAATAAATTATTTTA
Found at i:33076 original size:18 final size:18
Alignment explanation
Indices: 33029--33073 Score: 54
Period size: 18 Copynumber: 2.4 Consensus size: 18
33019 AGGTCAAGAT
* *
33029 AAAAATGAATAAGATGAG
1 AAAAATAAATAAAATGAG
*
33047 TAAAATAAATAAAATGAGG
1 AAAAATAAATAAAATGA-G
33066 AAAAATAA
1 AAAAATAA
33074 TAATGATAAG
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
18 14 0.64
19 8 0.36
ACGTcount: A:0.67, C:0.00, G:0.16, T:0.18
Consensus pattern (18 bp):
AAAAATAAATAAAATGAG
Found at i:34098 original size:2 final size:2
Alignment explanation
Indices: 34091--34162 Score: 144
Period size: 2 Copynumber: 36.0 Consensus size: 2
34081 TTGAAACACA
34091 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34133 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
34163 GAGCATGCAA
Statistics
Matches: 70, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 70 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:39183 original size:10 final size:10
Alignment explanation
Indices: 39168--39196 Score: 51
Period size: 9 Copynumber: 3.0 Consensus size: 10
39158 TTTAGTTATT
39168 AAATTAAAAA
1 AAATTAAAAA
39178 AAATT-AAAA
1 AAATTAAAAA
39187 AAATTAAAAA
1 AAATTAAAAA
39197 TATAGTGAGT
Statistics
Matches: 18, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
9 9 0.50
10 9 0.50
ACGTcount: A:0.79, C:0.00, G:0.00, T:0.21
Consensus pattern (10 bp):
AAATTAAAAA
Found at i:42610 original size:21 final size:21
Alignment explanation
Indices: 42586--42631 Score: 92
Period size: 21 Copynumber: 2.2 Consensus size: 21
42576 ATAATTCTCA
42586 TGCAAGGATTGCATCTCTTCT
1 TGCAAGGATTGCATCTCTTCT
42607 TGCAAGGATTGCATCTCTTCT
1 TGCAAGGATTGCATCTCTTCT
42628 TGCA
1 TGCA
42632 TGACTATTCT
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
21 25 1.00
ACGTcount: A:0.20, C:0.24, G:0.20, T:0.37
Consensus pattern (21 bp):
TGCAAGGATTGCATCTCTTCT
Found at i:45533 original size:21 final size:23
Alignment explanation
Indices: 45492--45533 Score: 61
Period size: 23 Copynumber: 1.9 Consensus size: 23
45482 CACAATGAAT
*
45492 GGTGGAGATTACTTGTATCTAAG
1 GGTGGAGATTACATGTATCTAAG
45515 GGTGGAGATTA-AT-TATCTA
1 GGTGGAGATTACATGTATCTA
45534 GAATGTTCTA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
21 6 0.33
22 1 0.06
23 11 0.61
ACGTcount: A:0.29, C:0.07, G:0.29, T:0.36
Consensus pattern (23 bp):
GGTGGAGATTACATGTATCTAAG
Found at i:53276 original size:48 final size:51
Alignment explanation
Indices: 53199--53338 Score: 146
Period size: 54 Copynumber: 2.7 Consensus size: 51
53189 ACCTACCCTA
* *
53199 ATCGAC-AACGGTGGGTT-AACTTCAGAAGATCTCGCACCTG-A-A-ACAACC
1 ATCGACGAA-GGTGGGTTGAA-TCCACAAGATCTCGCACCTGAACAGACAACC
* *
53247 ATTGACGAGGGTGGGTTGAATCCACAAGATCTCGCACCTGAAACAGGCACAACC
1 ATCGACGAAGGTGGGTTGAATCCACAAGATCTCGCACCTG-AACA-G-ACAACC
* *
53301 ATCGACGAAGGTGGGTTGATTCCACAAGATATCGCACC
1 ATCGACGAAGGTGGGTTGAATCCACAAGATCTCGCACC
53339 AGGAATGTCC
Statistics
Matches: 76, Mismatches: 8, Indels: 10
0.81 0.09 0.11
Matches are distributed among these distances:
48 31 0.41
49 3 0.04
50 1 0.01
51 1 0.01
54 40 0.53
ACGTcount: A:0.31, C:0.26, G:0.24, T:0.19
Consensus pattern (51 bp):
ATCGACGAAGGTGGGTTGAATCCACAAGATCTCGCACCTGAACAGACAACC
Found at i:54412 original size:24 final size:24
Alignment explanation
Indices: 54385--54431 Score: 60
Period size: 24 Copynumber: 2.0 Consensus size: 24
54375 GTTCATTTAC
54385 GTTC-GTTAACGTTCGGTTATGTTT
1 GTTCGGTT-ACGTTCGGTTATGTTT
* *
54409 GTTCGGTTATGTTCGTTTATGTT
1 GTTCGGTTACGTTCGGTTATGTT
54432 CATTCATTTA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
24 17 0.85
25 3 0.15
ACGTcount: A:0.11, C:0.11, G:0.26, T:0.53
Consensus pattern (24 bp):
GTTCGGTTACGTTCGGTTATGTTT
Found at i:54414 original size:14 final size:14
Alignment explanation
Indices: 54395--54421 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
54385 GTTCGTTAAC
54395 GTTCGGTTATGTTT
1 GTTCGGTTATGTTT
54409 GTTCGGTTATGTT
1 GTTCGGTTATGTT
54422 CGTTTATGTT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.07, C:0.07, G:0.30, T:0.56
Consensus pattern (14 bp):
GTTCGGTTATGTTT
Found at i:55203 original size:16 final size:16
Alignment explanation
Indices: 55180--55240 Score: 104
Period size: 16 Copynumber: 3.8 Consensus size: 16
55170 GGGTCTCCAA
*
55180 CGTTTATGTTTGTGTT
1 CGTTTATGTTCGTGTT
*
55196 CATTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
55212 CGTTTATGTTCGTGTT
1 CGTTTATGTTCGTGTT
55228 CGTTTATGTTCGT
1 CGTTTATGTTCGT
55241 TTATTTATTA
Statistics
Matches: 42, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.08, C:0.11, G:0.23, T:0.57
Consensus pattern (16 bp):
CGTTTATGTTCGTGTT
Found at i:55323 original size:10 final size:10
Alignment explanation
Indices: 55308--55338 Score: 62
Period size: 10 Copynumber: 3.1 Consensus size: 10
55298 CAAAAAAAAT
55308 TGTTCGTTTA
1 TGTTCGTTTA
55318 TGTTCGTTTA
1 TGTTCGTTTA
55328 TGTTCGTTTA
1 TGTTCGTTTA
55338 T
1 T
55339 TTATTAAATG
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.10, C:0.10, G:0.19, T:0.61
Consensus pattern (10 bp):
TGTTCGTTTA
Found at i:58781 original size:18 final size:18
Alignment explanation
Indices: 58758--58796 Score: 78
Period size: 18 Copynumber: 2.2 Consensus size: 18
58748 TGTGAGATTT
58758 TGAATTTATAATAAATTA
1 TGAATTTATAATAAATTA
58776 TGAATTTATAATAAATTA
1 TGAATTTATAATAAATTA
58794 TGA
1 TGA
58797 TAATTAATAT
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
18 21 1.00
ACGTcount: A:0.49, C:0.00, G:0.08, T:0.44
Consensus pattern (18 bp):
TGAATTTATAATAAATTA
Found at i:59214 original size:31 final size:33
Alignment explanation
Indices: 59156--59217 Score: 92
Period size: 31 Copynumber: 1.9 Consensus size: 33
59146 AAATTTTGAC
59156 AAAATTAGATTTTTTGTCAAAATTTAGAAGATGA
1 AAAATTAGATTTTTTG-CAAAATTTAGAAGATGA
*
59190 AAAATT-GATTTTTTG-AGAATTTAGAAGA
1 AAAATTAGATTTTTTGCAAAATTTAGAAGA
59218 GAGAAGAGAG
Statistics
Matches: 27, Mismatches: 1, Indels: 3
0.87 0.03 0.10
Matches are distributed among these distances:
31 12 0.44
33 9 0.33
34 6 0.22
ACGTcount: A:0.44, C:0.02, G:0.16, T:0.39
Consensus pattern (33 bp):
AAAATTAGATTTTTTGCAAAATTTAGAAGATGA
Found at i:59258 original size:45 final size:43
Alignment explanation
Indices: 59198--59287 Score: 108
Period size: 44 Copynumber: 2.0 Consensus size: 43
59188 GAAAAATTGA
*
59198 TTTTTTGAGAATTTAGAAGAGAGAAGAGAGAAAATTTGATTTTT
1 TTTTTTGAGAATTTAGAAAAGAGAAGAG-GAAAATTTGATTTTT
* * ** *
59242 TTTTTTGGGGAATTTAGAAAAGGGAAGAGGGGAATTTTATTTTT
1 TTTTTT-GAGAATTTAGAAAAGAGAAGAGGAAAATTTGATTTTT
59286 TT
1 TT
59288 CGCCAAATGT
Statistics
Matches: 39, Mismatches: 6, Indels: 2
0.83 0.13 0.04
Matches are distributed among these distances:
44 20 0.51
45 19 0.49
ACGTcount: A:0.33, C:0.00, G:0.26, T:0.41
Consensus pattern (43 bp):
TTTTTTGAGAATTTAGAAAAGAGAAGAGGAAAATTTGATTTTT
Found at i:59812 original size:20 final size:20
Alignment explanation
Indices: 59787--59826 Score: 71
Period size: 20 Copynumber: 2.0 Consensus size: 20
59777 ATCATACATA
59787 TATACTTATATAATATACTT
1 TATACTTATATAATATACTT
*
59807 TATACTTATATTATATACTT
1 TATACTTATATAATATACTT
59827 ATAAGTATAA
Statistics
Matches: 19, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 19 1.00
ACGTcount: A:0.38, C:0.10, G:0.00, T:0.53
Consensus pattern (20 bp):
TATACTTATATAATATACTT
Found at i:59848 original size:52 final size:53
Alignment explanation
Indices: 59787--59924 Score: 130
Period size: 52 Copynumber: 2.7 Consensus size: 53
59777 ATCATACATA
*
59787 TATACTTATATA-A-TATA-CTTTATACTTATATTATATACTTATAA-GTATAATG
1 TATACTTATATATATTATATATTTATA--TA-ATTATATACTTATAATGTATAATG
*
59839 TATAGTTATATATATTATATATTTATATAATTATATACTTATAATG--T-ATG
1 TATACTTATATATATTATATATTTATATAATTATATACTTATAATGTATAATG
* * *
59889 CATAACATTATATATA-TATATATATATATAAGTATA
1 TAT-AC-TTATATATATTATATATTTATATAATTATA
59925 GTGTATACAT
Statistics
Matches: 74, Mismatches: 6, Indels: 13
0.80 0.06 0.14
Matches are distributed among these distances:
50 5 0.07
51 20 0.27
52 35 0.47
53 4 0.05
54 4 0.05
55 6 0.08
ACGTcount: A:0.43, C:0.05, G:0.04, T:0.48
Consensus pattern (53 bp):
TATACTTATATATATTATATATTTATATAATTATATACTTATAATGTATAATG
Found at i:60546 original size:23 final size:23
Alignment explanation
Indices: 60499--60548 Score: 82
Period size: 23 Copynumber: 2.2 Consensus size: 23
60489 AATAACATAT
**
60499 TAGGTAGCGCTTATATAATGTAA
1 TAGGTAGCGCTTATATAATAAAA
60522 TAGGTAGCGCTTATATAATAAAA
1 TAGGTAGCGCTTATATAATAAAA
60545 TAGG
1 TAGG
60549 CATTTAACCG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
23 25 1.00
ACGTcount: A:0.38, C:0.08, G:0.22, T:0.32
Consensus pattern (23 bp):
TAGGTAGCGCTTATATAATAAAA
Found at i:60608 original size:87 final size:87
Alignment explanation
Indices: 60462--60624 Score: 308
Period size: 87 Copynumber: 1.9 Consensus size: 87
60452 AATGTTATAT
*
60462 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGGT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGAT
60527 AGCGCTTATATAATAAAATAGG
66 AGCGCTTATATAATAAAATAGG
*
60549 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCTCTTATATAATGTAATAGAT
1 CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGAT
60614 AGCGCTTATAT
66 AGCGCTTATAT
60625 TGACCTATTT
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
87 74 1.00
ACGTcount: A:0.40, C:0.12, G:0.15, T:0.33
Consensus pattern (87 bp):
CATTTAACCGGAAATATTATCAAGTACAATAACATATTAGGTAGCGCTTATATAATGTAATAGAT
AGCGCTTATATAATAAAATAGG
Found at i:61062 original size:200 final size:197
Alignment explanation
Indices: 60624--61349 Score: 753
Period size: 200 Copynumber: 3.6 Consensus size: 197
60614 AGCGCTTATA
** * * *
60624 TTGACCTATTTTCGAAGT-AAACTGGTATATTTATACCGGTAACATTGCAAATTTACCTATTACA
1 TTGACCTATTTTCTCA-TAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACA
* * * ** *
60688 TTATTATTATTGGTTTCGATGTTTTTTAGATCGAAACAATTT-TAAATGTATCGACACTTTATGC
65 TTATAATTATTGGTTTCGATGTTTTTAAGATCGATACTTTTTATAAATGTATCGACACTTTATGG
** * * * *
60752 TTGCACCTGGTTGGACATTCATATTTCATTCTGGAAAAAAGTATCGACACAAACTAACAAAGTGT
130 TTGCACCTTTTTGG-----C--A-TTCATTCTGGACAAAAGTATCAACACAAATTTAC-AAGTGT
*
60817 CGATACATT-AT
186 CGATACATTAAG
* * * *
60828 TTAGACCTATTCTCTCTTAAAACCGGTATATTTATACCCGTTACATTGAAAATTTACCTATTACA
1 TT-GACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACA
* * ** *
60893 TTATACTTATAGGTTTCGATGTTTCCAAGATGGATACTTTTTATAAATGTATCGACACTTTATGG
65 TTATAATTATTGGTTTCGATGTTTTTAAGATCGATACTTTTTATAAATGTATCGACACTTTATGG
60958 TTGCACCCTTTTTGGCATTCATTCTGGACCAAAAGTATCAACACAAATTTAGCAAGTGTCGATAC
130 TTGCA-CCTTTTTGGCATTCATTCTGGA-CAAAAGTATCAACACAAATTTA-CAAGTGTCGATAC
*
61023 TTTAAG
192 ATTAAG
* * * * * * *
61029 CTGACCTATTTTATCATAAAACTGGTATATTTATATCGGTTACATTGTAAATTTACTTAATACAA
1 TTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACAT
* ** *
61094 TATAATTATCGGTTTCGATGTTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGCG
66 TATAATTATTGGTTTCGATGTTTTTAAGATCGATACTTTTTATAAATGTATCGACACTTTATG-G
* * *
61159 -TGCACCTTGTTTGTGCATTCATCCTGGACAATAAGTATCAACACAAATTCCACAAGTGCCGATA
130 TTGCACCTT-TTTG-GCATTCATTCTGGACAA-AAGTATCAACACAAATT-TACAAGTGTCGATA
*
61223 CATTATG
191 CATTAAG
* * * * *
61230 TTGACCTGTTTTCTAAT-TAACCGATATATTTATACCGGTTACATTGTTAATTTACCTATTACAT
1 TTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACAT
* ** * *
61294 TATAATTATTGGTTTTGATGTTTTTTGGGTCGATAC-TTGTATAAAATGTATCGACA
66 TATAATTATTGGTTTCGATGTTTTTAAGATCGATACTTTTTAT-AAATGTATCGACA
61350 AATATTTAGG
Statistics
Matches: 440, Mismatches: 69, Indels: 30
0.82 0.13 0.06
Matches are distributed among these distances:
199 19 0.04
200 236 0.54
201 63 0.14
202 2 0.00
204 3 0.01
205 84 0.19
206 26 0.06
207 7 0.02
ACGTcount: A:0.31, C:0.16, G:0.14, T:0.39
Consensus pattern (197 bp):
TTGACCTATTTTCTCATAAAACCGGTATATTTATACCGGTTACATTGTAAATTTACCTATTACAT
TATAATTATTGGTTTCGATGTTTTTAAGATCGATACTTTTTATAAATGTATCGACACTTTATGGT
TGCACCTTTTTGGCATTCATTCTGGACAAAAGTATCAACACAAATTTACAAGTGTCGATACATTA
AG
Found at i:64086 original size:200 final size:199
Alignment explanation
Indices: 63737--64478 Score: 859
Period size: 200 Copynumber: 3.8 Consensus size: 199
63727 ATCGAATAAA
* * * * *
63737 AAAAAGTGTCGCTACATGTTGTAGACCTATTCTCTTATAAAACGGTATATTTATACCGGTTATAT
1 AAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACAGTATATTTATACCGATTATAT
* *
63802 TAAAAAAATTACCTATTACATTATAATTATGGGTTTCGATATTTTTGGGATTGACACTTTTTGAA
66 T-ACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATTGACACTTTTTGAA
* * * *
63867 AATGTATTGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCTGGACATAAAGTATCGATACA
130 AATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAATATCGACACA
63932 ATATT
195 ATATT
* *
63937 AAAAAGTGTTGATACATGTTGTAGACCTATTCTCTCATAAAATCAGTATATTTATACCGATTATA
1 AAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAA-CAGTATATTTATACCGATTATA
** * **
64002 TTACAAAATTACCTATTACATTATAATTATGGGTTTTAATGTTTTTAGGATCAACA-TTCTTTGA
65 TTACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATTGACACTT-TTTGA
* * * * * *
64066 AAATATATCGATATTTTGTGCGTTCATCCTTTTTGGCATCTATTCTGGACAAAAAATATCAACAC
129 AAATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAATATCGACAC
64131 AA-ATTT
194 AATA-TT
* * * *
64137 ATATAGTGTCGATGCATGTTATAGACATA-T-TCTC-T----CA-TA-A---A-ACCGA-TATAT
1 AAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACAGTATATTTATACCGATTATAT
** *
64188 TAC-CTATTA-C------ATTATAATTATGGGTTTCGATGTTTTCGGGATTGACACTTTTTGAAA
66 TACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATTGACACTTTTTGAAA
*
64245 ATGTATCGACACTTTATGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAATTATCGACACA
131 ATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAA-TATCGACACA
64310 ATATT
195 ATATT
* * * *
64315 AAGAAGTGTCGATATATGTTATAGACCTATTCTCTCATAAAACTAGTATATGTATACCGGTTATA
1 AAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAAC-AGTATATTTATACCGATTATA
* *
64380 TTACAAAATTACCTATTACATTATAATTATGGGGTTTTGATGTTTTTGGGATTGACAC-TTTTAA
65 TTACAAAATTACCTATTACATTATAATTAT-GGGTTTCGATGTTTTTGGGATTGACACTTTTTGA
* * *
64444 TAAATGTATCGAAACTTTATGCGTGCAACCCTTTT
129 -AAATGTATCGACACTTTGTGCGTTC-ACCCTTTT
64479 GGATCGACAC
Statistics
Matches: 453, Mismatches: 57, Indels: 61
0.79 0.10 0.11
Matches are distributed among these distances:
177 86 0.19
178 37 0.08
179 2 0.00
180 4 0.01
181 1 0.00
183 1 0.00
184 4 0.01
185 9 0.02
186 6 0.01
187 3 0.01
188 1 0.00
190 1 0.00
191 3 0.01
192 6 0.01
193 8 0.02
194 4 0.01
195 1 0.00
197 1 0.00
198 4 0.01
199 4 0.01
200 173 0.38
201 38 0.08
202 48 0.11
203 8 0.02
ACGTcount: A:0.32, C:0.15, G:0.14, T:0.39
Consensus pattern (199 bp):
AAAAAGTGTCGATACATGTTATAGACCTATTCTCTCATAAAACAGTATATTTATACCGATTATAT
TACAAAATTACCTATTACATTATAATTATGGGTTTCGATGTTTTTGGGATTGACACTTTTTGAAA
ATGTATCGACACTTTGTGCGTTCACCCTTTTTGGCATCCATTCTGGACAAAAAATATCGACACAA
TATT
Found at i:64530 original size:51 final size:52
Alignment explanation
Indices: 64422--64531 Score: 118
Period size: 51 Copynumber: 2.1 Consensus size: 52
64412 GGTTTTGATG
* * *
64422 TTTTTGGGATTGACACTTTTAATAAATGTATCGAAACTTTATGCGTGCAACCC
1 TTTTT-GGATCGACACTTTTAATAAATATATCGAAACTTTATACGTGCAACCC
* * * *
64475 -TTTTGGATCGACACTCTTTGA-AAATATATCGACACTTTGTACGTTC-ACCC
1 TTTTTGGATCGACACT-TTTAATAAATATATCGAAACTTTATACGTGCAACCC
64525 TTTTTGG
1 TTTTTGG
64532 CATCCATTAT
Statistics
Matches: 48, Mismatches: 7, Indels: 6
0.79 0.11 0.10
Matches are distributed among these distances:
50 4 0.08
51 36 0.75
52 8 0.17
ACGTcount: A:0.25, C:0.19, G:0.16, T:0.39
Consensus pattern (52 bp):
TTTTTGGATCGACACTTTTAATAAATATATCGAAACTTTATACGTGCAACCC
Found at i:65989 original size:3 final size:3
Alignment explanation
Indices: 65981--66034 Score: 63
Period size: 3 Copynumber: 18.0 Consensus size: 3
65971 ACTTGTTTGG
* * * *
65981 ATC ATC ATC GTT ATC ATC ATC ATC ATC ATC ATC ATC TTC ATC GTC ATC
1 ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC ATC
*
66029 TTC ATC
1 ATC ATC
66035 TTTATTGACC
Statistics
Matches: 41, Mismatches: 10, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
3 41 1.00
ACGTcount: A:0.26, C:0.31, G:0.04, T:0.39
Consensus pattern (3 bp):
ATC
Found at i:67942 original size:200 final size:200
Alignment explanation
Indices: 67510--68667 Score: 1937
Period size: 200 Copynumber: 5.8 Consensus size: 200
67500 TATTTAAATT
* *
67510 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAATCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
* * *
67575 TATTTATACCGGTTACATTGAAAATTTACCTATTATATTATACTTATAGGTTTCTG-TGTTTCT-
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTC-GATGTTTCTG
*
67638 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGGATTCATTCTGG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
67703 ACCAAA
195 ACCAAA
*
67709 AGTATCGACGCAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
* *
67774 AATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTTGATGTTTCTGG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
** * *
67839 GATCGATACTTTTTATAAATATATCGACACTTTATGGTTGCACCCTTTTTTGCATTCATTTTGGA
131 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
67904 CCAAA
196 CCAAA
*
67909 AGTATCGACACAAAATTAAAAAG-GTTCGATACATGTTGTAGACCTATTCTCTCGTAAAATCGGT
1 AGTATCGACACAAAATTAAAAAGTG-TCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGT
* *
67973 ATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
65 ATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
* * * *
68038 GGATCGACACTTTTTATAAATGGATCGACACTTTATGGTTGCACCTTTTTTGTCATTCATTATGG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
*
68103 ATCAAA
195 ACCAAA
*
68109 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGATA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
68174 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTAT-GGTTTCGATGTTTCTGG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
68238 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
131 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
68303 CCAAA
196 CCAAA
* * * *
68308 AGTATCGACACAAAGTAAAAAAGTGTCGATAAATGTTGTAGACCTATTCTCTCGTAAAACCGATA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
* *
68373 TATTTATACCGATTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
*
68438 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGTACCCTTTTTGGCATTCATTCTGGA
131 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
68503 CCAAA
196 CCAAA
* * *
68508 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTATCTCATAAAACTGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
* * * *
68573 AATTTATACTGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATATTTATGG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
*
68638 GATCGATACTTTTTATATATGGATCGACAC
131 GATCGATACTTTTTATAAATGGATCGACAC
68668 ATATGCTTAC
Statistics
Matches: 898, Mismatches: 56, Indels: 9
0.93 0.06 0.01
Matches are distributed among these distances:
198 1 0.00
199 308 0.34
200 588 0.65
201 1 0.00
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (200 bp):
AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGGTA
TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
CCAAA
Found at i:68248 original size:399 final size:400
Alignment explanation
Indices: 67510--68667 Score: 1973
Period size: 399 Copynumber: 2.9 Consensus size: 400
67500 TATTTAAATT
*
67510 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAATCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAATCGGTA
* *
67575 TATTTATACCGGTTACATTGAAAATTTACCTATTATATTATACTTATAGGTTTCTG-TGTTTCT-
66 TATTTATACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTC-GATGTTTCTG
*
67638 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGGATTCATTCTGG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
*
67703 ACCAAAAGTATCGACGCAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAA
195 ACCAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAA
*
67768 CCGGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTTGATGT
260 CCGGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGT
* *
67833 TTCTGGGATCGATACTTTTTATAAATATATCGACACTTTATGGTTGCACCCTTTTTTGCATTCAT
325 TTCTGGGATCGATACTTTTTATAAATAGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCAT
*
67898 TTTGGACCAAA
390 TCTGGACCAAA
67909 AGTATCGACACAAAATTAAAAAG-GTTCGATACATGTTGTAGACCTATTCTCTCGTAAAATCGGT
1 AGTATCGACACAAAATTAAAAAGTG-TCGATACATGTTGTAGACCTATTCTCTCGTAAAATCGGT
*
67973 ATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
65 ATATTTATACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTG
* * * *
68038 GGATCGACACTTTTTATAAATGGATCGACACTTTATGGTTGCACCTTTTTTGTCATTCATTATGG
130 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
*
68103 ATCAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAA
195 ACCAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAA
* *
68168 CCGATATATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTAT-GGTTTCGATGT
260 CCGGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGT
*
68232 TTCTGGGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCAT
325 TTCTGGGATCGATACTTTTTATAAATAGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCAT
68297 TCTGGACCAAA
390 TCTGGACCAAA
* * * * *
68308 AGTATCGACACAAAGTAAAAAAGTGTCGATAAATGTTGTAGACCTATTCTCTCGTAAAACCGATA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAATCGGTA
*
68373 TATTTATACCGATTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
66 TATTTATACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
*
68438 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGTACCCTTTTTGGCATTCATTCTGGA
131 GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
* *
68503 CCAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTATCTCATAAAAC
196 CCAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAAC
* * *
68568 TGGTAAATTTATACTGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATATT
261 CGGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTT
* * *
68633 TATGGGATCGATACTTTTTATATATGGATCGACAC
326 TCTGGGATCGATACTTTTTATAAATAGATCGACAC
68668 ATATGCTTAC
Statistics
Matches: 714, Mismatches: 40, Indels: 9
0.94 0.05 0.01
Matches are distributed among these distances:
398 2 0.00
399 493 0.69
400 219 0.31
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (400 bp):
AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAATCGGTA
TATTTATACCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGTTTCTGG
GATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGA
CCAAAAGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAAC
CGGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTT
TCTGGGATCGATACTTTTTATAAATAGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATT
CTGGACCAAA
Found at i:68651 original size:599 final size:599
Alignment explanation
Indices: 67510--68667 Score: 1984
Period size: 599 Copynumber: 1.9 Consensus size: 599
67500 TATTTAAATT
* *
67510 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAATCGGTA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGATA
* *
67575 TATTTATACCGGTTACATTGAAAATTTACCTATTATATTATACTTATAGGTTTCTGTGTTTCTGG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATAGGTTTCTGTGTTTCTGG
*
67640 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGGATTCATTCTGGAC
131 ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGAC
* * *
67705 CAAAAGTATCGACGCAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACC
196 CAAAAGTATCGACACAAAATAAAAAAGTGTCGATAAATGTTGTAGACCTATTCTCTCGTAAAACC
* * *
67770 GGTAAATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTTGATGTTT
261 GATAAATTTATACCGATTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTT
* * *
67835 CTGGGATCGATACTTTTTATAAATATATCGACACTTTATGGTTGCACCCTTTTTTGCATTCATTT
326 CTGGGATCGATACTTTTTATAAATAGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTC
* *
67900 TGGACCAAAAGTATCGACACAAAATTAAAAAGGTTCGATACATGTTGTAGACCTATTCTCTCGTA
391 TGGACCAAAAGTATCGACACAAAATTAAAAAGGTTCGATACATGTTGTAGACCTATTATCTCATA
* *
67965 AAATCGGTATATTTATATCGGTTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGA
456 AAATCGGTAAATTTATATCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGA
* *
68030 TGTTTCTGGGATCGACACTTTTTATAAATGGATCGACACTTTATGGTTGCACCTTTTTTGTCATT
521 TATTTATGGGATCGACACTTTTTATAAATGGATCGACACTTTATGGTTGCACCTTTTTTGTCATT
68095 CATTATGGATCAAA
586 CATTATGGATCAAA
*
68109 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCGTAAAACCGATA
1 AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGATA
68174 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTAT-GGTTTC-GATGTTTCTG
66 TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATAGGTTTCTG-TGTTTCT-
68237 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
129 GGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGG
*
68302 ACCAAAAGTATCGACACAAAGTAAAAAAGTGTCGATAAATGTTGTAGACCTATTCTCTCGTAAAA
194 ACCAAAAGTATCGACACAAAATAAAAAAGTGTCGATAAATGTTGTAGACCTATTCTCTCGTAAAA
* *
68367 CCGATATATTTATACCGATTACATTGAAAATTTACCTATTACATTATACTTATGGGTTTCGATGT
259 CCGATAAATTTATACCGATTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGT
* *
68432 TTCTGGGATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGTACCCTTTTTGGCATTCAT
324 TTCTGGGATCGATACTTTTTATAAATAGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCAT
68497 TCTGGACCAAAAGTATCGACACAAAATTAAAAA-GTGTCGATACATGTTGTAGACCTATTATCTC
389 TCTGGACCAAAAGTATCGACACAAAATTAAAAAGGT-TCGATACATGTTGTAGACCTATTATCTC
68561 ATAAAA-CTGGTAAATTTATA-CTGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGT
453 ATAAAATC-GGTAAATTTATATC-GGTTACATTGAAAAATTACCTATTACATTATACTTATGGGT
* *
68624 TTCGATATTTATGGGATCGATACTTTTTATATATGGATCGACAC
516 TTCGATATTTATGGGATCGACACTTTTTATAAATGGATCGACAC
68668 ATATGCTTAC
Statistics
Matches: 526, Mismatches: 28, Indels: 10
0.93 0.05 0.02
Matches are distributed among these distances:
597 1 0.00
598 17 0.03
599 508 0.97
ACGTcount: A:0.31, C:0.16, G:0.16, T:0.37
Consensus pattern (599 bp):
AGTATCGACACAAAATTAAAAAGTGTCGATACATGTTGTAGACCTATTCTCTCATAAAACCGATA
TATTTATACCGGTTACATTGAAAAATTACCTATTACATTATACTTATAGGTTTCTGTGTTTCTGG
ATCGATACTTTTTATAAATGGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTCTGGAC
CAAAAGTATCGACACAAAATAAAAAAGTGTCGATAAATGTTGTAGACCTATTCTCTCGTAAAACC
GATAAATTTATACCGATTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGATGTTT
CTGGGATCGATACTTTTTATAAATAGATCGACACTTTATGGTTGCACCCTTTTTGGCATTCATTC
TGGACCAAAAGTATCGACACAAAATTAAAAAGGTTCGATACATGTTGTAGACCTATTATCTCATA
AAATCGGTAAATTTATATCGGTTACATTGAAAAATTACCTATTACATTATACTTATGGGTTTCGA
TATTTATGGGATCGACACTTTTTATAAATGGATCGACACTTTATGGTTGCACCTTTTTTGTCATT
CATTATGGATCAAA
Found at i:68933 original size:19 final size:19
Alignment explanation
Indices: 68909--68952 Score: 79
Period size: 19 Copynumber: 2.3 Consensus size: 19
68899 TTACATTCAC
68909 ATACAAAATTATAAATCAT
1 ATACAAAATTATAAATCAT
*
68928 ATACAAAATTATAAATCTT
1 ATACAAAATTATAAATCAT
68947 ATACAA
1 ATACAA
68953 CATGAACCCT
Statistics
Matches: 24, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
19 24 1.00
ACGTcount: A:0.57, C:0.11, G:0.00, T:0.32
Consensus pattern (19 bp):
ATACAAAATTATAAATCAT
Found at i:70533 original size:65 final size:64
Alignment explanation
Indices: 70335--70544 Score: 207
Period size: 65 Copynumber: 3.2 Consensus size: 64
70325 TGCACTAAGA
* * ** *
70335 GTGCAGCGATGCATCAAGTGCATTCGATGTTTC--AAAATGGCCAGAGTGCATCGATGCATGGCT
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAAT--CCTCAGTGCATCGATGCATGGTT
70398 G
64 G
*
70399 GTGCATCGATGCATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCATGGTAT
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAATCCTCAGTGCATCGATGCATGGT-T
70464 -
64 G
* ** *
70464 GTGCATCGATGCATGAAATGCATTCGATG-TTCA-ATTTAT-TTCATGGTGCATCGATGCATGGA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATA-AAATCCTCA--GTGCATCGATGCATGG-
70526 TTG
62 TTG
*
70529 GTGCATCGGTGCATCA
1 GTGCATCGATGCATCA
70545 CTTTGATAAA
Statistics
Matches: 124, Mismatches: 13, Indels: 17
0.81 0.08 0.11
Matches are distributed among these distances:
62 4 0.03
63 6 0.05
64 43 0.35
65 65 0.52
66 1 0.01
67 5 0.04
ACGTcount: A:0.25, C:0.19, G:0.26, T:0.30
Consensus pattern (64 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCCTCAGTGCATCGATGCATGGTTG
Found at i:71077 original size:2 final size:2
Alignment explanation
Indices: 71070--71118 Score: 98
Period size: 2 Copynumber: 24.5 Consensus size: 2
71060 TTCAAACCAA
71070 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
71112 AT AT AT A
1 AT AT AT A
71119 ATAAGTTCAA
Statistics
Matches: 47, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 47 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:72810 original size:14 final size:14
Alignment explanation
Indices: 72791--72820 Score: 60
Period size: 14 Copynumber: 2.1 Consensus size: 14
72781 TGTCCGATAT
72791 AATGTTCATCCTAG
1 AATGTTCATCCTAG
72805 AATGTTCATCCTAG
1 AATGTTCATCCTAG
72819 AA
1 AA
72821 CTAATCTAAA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 16 1.00
ACGTcount: A:0.33, C:0.20, G:0.13, T:0.33
Consensus pattern (14 bp):
AATGTTCATCCTAG
Found at i:73190 original size:24 final size:24
Alignment explanation
Indices: 73121--73201 Score: 91
Period size: 24 Copynumber: 3.5 Consensus size: 24
73111 CATGTCCTTG
*
73121 TGCATCGATGCACATTC-AAGGCA
1 TGCATCGATGCACATTCAAAGGGA
*
73144 TGCATCGATG--CA-TCAACA-TGA
1 TGCATCGATGCACATTCAA-AGGGA
*
73165 TGAATCGATGCACATTCAAAGGGA
1 TGCATCGATGCACATTCAAAGGGA
73189 TGCATCGATGCAC
1 TGCATCGATGCAC
73202 TTTTAAGTGT
Statistics
Matches: 47, Mismatches: 5, Indels: 11
0.75 0.08 0.17
Matches are distributed among these distances:
20 2 0.04
21 13 0.28
22 1 0.02
23 13 0.28
24 18 0.38
ACGTcount: A:0.32, C:0.23, G:0.22, T:0.22
Consensus pattern (24 bp):
TGCATCGATGCACATTCAAAGGGA
Found at i:75194 original size:15 final size:15
Alignment explanation
Indices: 75174--75205 Score: 64
Period size: 15 Copynumber: 2.1 Consensus size: 15
75164 TCTCGAGAGG
75174 ATCTTTCGTTTCTTC
1 ATCTTTCGTTTCTTC
75189 ATCTTTCGTTTCTTC
1 ATCTTTCGTTTCTTC
75204 AT
1 AT
75206 TTGATGATGG
Statistics
Matches: 17, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 17 1.00
ACGTcount: A:0.09, C:0.25, G:0.06, T:0.59
Consensus pattern (15 bp):
ATCTTTCGTTTCTTC
Found at i:79217 original size:65 final size:65
Alignment explanation
Indices: 79019--79219 Score: 166
Period size: 65 Copynumber: 3.1 Consensus size: 65
79009 TGCACTAAGA
* * * ** * *
79019 GTGCAGCGATGCAAT-AAGTGCATTCGATGTTTCA-AAATAGCCAGAGTACATCGATGCATGG-C
1 GTGCATCGATGC-ATCAAATGCATTCGATGTTTCATAAA-ATCCTCAGTGCATCGATGCATGGAT
79081 TG
64 TG
* *
79083 GTGCATCGATGTATCAAATGCATTCGATGTTTTCATAAAATCCTCAGTGCATCGGTGCAT-GATA
1 GTGCATCGATGCATCAAATGCATTCGATG-TTTCATAAAATCCTCAGTGCATCGATGCATGGAT-
79147 T-
64 TG
* ** *
79148 GTGCATCGATGCATGAAATGCATTCGATG-TTCA-ATTTAT-TTCATGGTGCATCGATGCATGGA
1 GTGCATCGATGCATCAAATGCATTCGATGTTTCATA-AAATCCTCA--GTGCATCGATGCATGGA
79210 TTG
63 TTG
79213 GTGCATC
1 GTGCATC
79220 ACTTTGATAA
Statistics
Matches: 112, Mismatches: 15, Indels: 19
0.77 0.10 0.13
Matches are distributed among these distances:
62 4 0.04
63 8 0.07
64 38 0.34
65 58 0.52
66 4 0.04
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.31
Consensus pattern (65 bp):
GTGCATCGATGCATCAAATGCATTCGATGTTTCATAAAATCCTCAGTGCATCGATGCATGGATTG
Found at i:80448 original size:33 final size:33
Alignment explanation
Indices: 80411--80474 Score: 94
Period size: 33 Copynumber: 1.9 Consensus size: 33
80401 CATCTTAAGA
*
80411 TCACCCCTTAACA-CTTCAACTTCTTTCACCATT
1 TCACCCCTCAACACCTT-AACTTCTTTCACCATT
*
80444 TCACCCCTCAACACCTTTACTTCTTTCACCA
1 TCACCCCTCAACACCTTAACTTCTTTCACCA
80475 CTCCATCTAT
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 25 0.89
34 3 0.11
ACGTcount: A:0.23, C:0.42, G:0.00, T:0.34
Consensus pattern (33 bp):
TCACCCCTCAACACCTTAACTTCTTTCACCATT
Found at i:80534 original size:21 final size:21
Alignment explanation
Indices: 80509--80552 Score: 61
Period size: 21 Copynumber: 2.1 Consensus size: 21
80499 CCCCTTATGC
80509 CTCTCAAGTGTATCTTCGACT
1 CTCTCAAGTGTATCTTCGACT
* * *
80530 CTCTCAAGTTTCTCTTTGACT
1 CTCTCAAGTGTATCTTCGACT
80551 CT
1 CT
80553 TGATTGTCTT
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
21 20 1.00
ACGTcount: A:0.16, C:0.30, G:0.11, T:0.43
Consensus pattern (21 bp):
CTCTCAAGTGTATCTTCGACT
Found at i:82830 original size:20 final size:18
Alignment explanation
Indices: 82785--82821 Score: 56
Period size: 20 Copynumber: 1.9 Consensus size: 18
82775 CCGGTAGCAC
82785 TTTACCGGTTTTATCATT
1 TTTACCGGTTTTATCATT
82803 TTGATACCGGTTTTATCAT
1 TT--TACCGGTTTTATCAT
82822 ATATTTACCT
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
18 2 0.12
20 15 0.88
ACGTcount: A:0.19, C:0.16, G:0.14, T:0.51
Consensus pattern (18 bp):
TTTACCGGTTTTATCATT
Found at i:83190 original size:182 final size:181
Alignment explanation
Indices: 82747--83225 Score: 604
Period size: 182 Copynumber: 2.6 Consensus size: 181
82737 TACACGTACT
* * *
82747 TATTAAAGTATCGACACTTTCAATATATCCGGTAGCACTTTACCGGTTTTATCATTTTGATACCG
1 TATTAAAGTATCGACACTTTCAATATATCTGGTAGGACTTTACCGGTTTTATCATTTAG-TACCG
*
82812 GTTTTATCATATATTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAATATCGACACT
65 GTTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAATATCGACACT
*
82877 TTATAAGCGCTAAAACTGCTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
130 TTATAAGCGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
* * * ** * ** *
82929 TATTAAAGTACCGACACTTTAAATATATATGACAGCG-CTTTATCAATTTTATCATTTCAATACC
1 TATTAAAGTATCGACACTTTCAATATATCTGGTAG-GACTTTACCGGTTTTATCATTT-AGTACC
* * * * *
82993 GGTTTTGTCATATTTTTACATGTTATATCGTTGTGGATCAATATATTTTTATAAAGTATCGACAC
64 GGTTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAATATCGACAC
* * *
83058 TTTATAGGCGTTAAAACTACTTTTCTTTTAAATTCACAAAGTGTCGAT-CATTA
129 TTTATAAGCGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATAC-TTA
* * *
83111 TATTAAAGTATCGACACGTTCAATATATCTGGTAGGACTTTACCGGTATTGTC-TTCTAGTGACC
1 TATTAAAGTATCGACACTTTCAATATATCTGGTAGGACTTTACCGGTTTTATCATT-TAGT-ACC
* * * * * *
83175 GATTTTATTATATTTTTACCTATTATATTGATATGGATCGATACATTTTTA
64 GGTTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTA
83226 ATTTGGATTG
Statistics
Matches: 247, Mismatches: 44, Indels: 12
0.82 0.15 0.04
Matches are distributed among these distances:
181 6 0.02
182 241 0.98
ACGTcount: A:0.30, C:0.16, G:0.13, T:0.42
Consensus pattern (181 bp):
TATTAAAGTATCGACACTTTCAATATATCTGGTAGGACTTTACCGGTTTTATCATTTAGTACCGG
TTTTATCATATTTTTACCTGTTATATCGTTGTGGATCGATACATTTTTATAAAATATCGACACTT
TATAAGCGCTAAAACTACTTCTCTTTTAAATTCACAAAGTGTCGATACTTA
Found at i:84090 original size:9 final size:9
Alignment explanation
Indices: 84076--84107 Score: 64
Period size: 9 Copynumber: 3.6 Consensus size: 9
84066 TATTGAGGAT
84076 CTTGCCCCG
1 CTTGCCCCG
84085 CTTGCCCCG
1 CTTGCCCCG
84094 CTTGCCCCG
1 CTTGCCCCG
84103 CTTGC
1 CTTGC
84108 TCAGCTTAAG
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
9 23 1.00
ACGTcount: A:0.00, C:0.53, G:0.22, T:0.25
Consensus pattern (9 bp):
CTTGCCCCG
Found at i:84114 original size:18 final size:18
Alignment explanation
Indices: 84076--84114 Score: 60
Period size: 18 Copynumber: 2.2 Consensus size: 18
84066 TATTGAGGAT
*
84076 CTTGCCCCGCTTGCCCCG
1 CTTGCCCCGCTTGCCCAG
*
84094 CTTGCCCCGCTTGCTCAG
1 CTTGCCCCGCTTGCCCAG
84112 CTT
1 CTT
84115 AAGCTTGTTT
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
18 19 1.00
ACGTcount: A:0.03, C:0.49, G:0.21, T:0.28
Consensus pattern (18 bp):
CTTGCCCCGCTTGCCCAG
Found at i:94272 original size:88 final size:87
Alignment explanation
Indices: 94169--94364 Score: 207
Period size: 87 Copynumber: 2.2 Consensus size: 87
94159 GGTTGGTCTT
*
94169 AGTGAGA-AGGACTTGATGAATCCACTGAACGTGA-AAGAATGAGCTTTACACTCTCAATGAATT
1 AGTGAGACA-GACTTGATGAATCCACTG-ACGTGAGAAG-ATGAGCTTTACACACTCAATGAATT
*
94232 CATAGCCCATGATTTGGGTGGTTCG
63 CATAGCCCAGGATTTGGGTGGTTCG
* * * * * * * * *
94257 AGTGAGACAGACTTGATGAATTCACTGGCTTGAGATGTTGAGTTTTACGCACTTAATGAGTTCAT
1 AGTGAGACAGACTTGATGAATCCACTGACGTGAGAAGATGAGCTTTACACACTCAATGAATTCAT
* *
94322 AGCTCAGGATTTGGGTGGTTCT
66 AGCCCAGGATTTGGGTGGTTCG
* * *
94344 TGTGAGACGGATTTGATGAAT
1 AGTGAGACAGACTTGATGAAT
94365 TCATCGATTT
Statistics
Matches: 90, Mismatches: 16, Indels: 5
0.81 0.14 0.05
Matches are distributed among these distances:
87 63 0.70
88 26 0.29
89 1 0.01
ACGTcount: A:0.28, C:0.14, G:0.27, T:0.31
Consensus pattern (87 bp):
AGTGAGACAGACTTGATGAATCCACTGACGTGAGAAGATGAGCTTTACACACTCAATGAATTCAT
AGCCCAGGATTTGGGTGGTTCG
Done.