Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007137.1 Hibiscus syriacus cultivar Beakdansim tig00018669_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68405

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2647--2676
15
2.0
15
100
0
60
66
6
6
20
1.38
11882--11920
19
2.1
18
85
4
51
38
10
5
46
1.60
13921--14000
31
2.6
31
84
4
90
40
18
17
23
1.91
15678--15712
15
2.3
15
95
0
61
48
14
2
34
1.58
15853--15982
66
2.0
66
85
0
179
37
21
20
20
1.94
17800--17844
22
2.0
22
86
0
63
33
26
24
15
1.95
18671--18721
2
26.0
2
92
4
86
49
1
0
49
1.12
19458--19499
17
2.4
18
84
11
61
33
0
2
64
1.07
42345--42412
30
2.3
31
82
7
95
48
1
5
44
1.36
48328--48372
3
15.3
3
81
4
56
62
2
4
31
1.27
48583--48864
133
2.1
135
89
1
424
24
17
29
29
1.97
48893--48955
28
2.2
28
85
0
81
39
19
14
26
1.90
48985--49167
66
2.8
63
80
8
197
39
14
20
25
1.90
49426--49496
26
2.6
26
86
6
97
49
11
12
26
1.74
49579--49686
28
3.7
29
78
17
123
42
12
12
32
1.80
49456--49614
64
2.5
63
84
9
205
44
12
12
30
1.79
49580--49672
33
3.0
33
80
13
115
40
12
11
34
1.80
49804--50105
105
2.9
105
85
1
383
39
10
16
33
1.82
50464--50497
16
2.1
16
94
0
59
23
5
26
44
1.76
58160--58204
3
15.3
3
81
4
56
62
2
4
31
1.27
59000--59038
15
2.8
13
82
14
51
30
2
0
66
1.05
59005--59065
15
3.9
15
74
16
61
34
3
3
59
1.30
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
59653--59683
6
5.2
6
100
0
62
35
48
16
0
1.46
59680--59733
5
10.8
5
100
0
108
40
20
38
0
1.53
60330--60426
41
2.4
41
87
0
149
38
26
19
15
1.92
60371--60582
62
3.3
62
79
11
230
35
25
19
19
1.95
60394--60534
69
2.0
70
93
2
239
35
25
17
21
1.95
60525--60575
21
2.4
21
100
0
102
33
29
19
17
1.95
67965--67990
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!