genome.fa.s7138.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007138.1 Hibiscus syriacus cultivar Beakdansim tig00018671_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156351

Tables:   1   

This is table  1  of  1  ( 97 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
461--565	20	5.6	20	80	13	123	15	12	20	52	1.74
900--956	21	2.7	21	83	2	78	19	19	42	19	1.90
900--949	22	2.3	22	89	3	75	20	16	44	20	1.87
1296--1343	2	24.0	2	100	0	96	50	0	0	50	1.00
5662--5688	2	13.5	2	100	0	54	51	0	0	48	1.00
6313--6364	16	3.2	17	72	22	58	42	0	21	36	1.53
9227--9259	2	16.5	2	93	0	57	54	0	0	45	0.99
13277--13341	35	1.9	33	90	6	103	36	6	6	50	1.52
29058--29124	21	3.2	20	73	12	64	23	1	8	65	1.29
29087--29129	23	1.9	23	85	4	61	27	0	4	67	1.10
29987--30048	3	20.7	3	93	6	108	33	0	0	66	0.92
31098--31177	31	2.6	31	91	0	124	20	12	17	50	1.78
31418--31458	18	2.3	18	87	8	57	58	17	19	4	1.56
33673--33737	20	3.2	20	65	10	51	20	20	24	35	1.96
33761--33916	20	7.7	20	76	4	159	16	20	23	39	1.92
33758--33941	41	4.5	41	94	2	307	17	19	23	39	1.92
34019--34057	6	6.7	6	97	2	71	30	51	17	0	1.46
34515--34578	6	11.5	6	98	1	93	0	17	54	28	1.43
34691--34754	21	3.1	21	72	4	67	37	26	17	18	1.93
35967--36000	12	3.1	11	91	8	52	29	52	17	0	1.45
36653--36703	21	2.4	21	93	0	84	25	17	25	31	1.97
39934--39982	24	2.0	24	100	0	98	38	8	16	36	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43951--43999	18	2.7	19	77	22	52	53	0	4	42	1.20
44245--44307	11	5.8	11	73	14	51	66	1	4	26	1.20
44245--44285	12	3.5	12	83	3	57	68	2	2	26	1.15
45684--45728	23	2.0	23	81	0	54	0	33	11	55	1.35
45917--45993	39	2.0	39	92	0	127	16	18	42	22	1.89
55154--55317	65	2.5	64	87	1	238	28	15	26	30	1.96
55268--55314	19	2.5	19	83	10	62	25	17	31	25	1.97
55158--55364	65	3.2	62	80	12	213	28	16	24	30	1.96
55534--55573	20	2.0	21	85	14	57	45	7	5	42	1.54
61752--61791	21	1.9	21	85	10	55	35	10	2	52	1.48
63717--63880	65	2.5	64	87	1	238	28	15	26	30	1.96
63831--63877	19	2.5	19	83	10	62	25	17	31	25	1.97
63721--63927	65	3.2	62	80	12	213	28	16	24	30	1.96
64097--64136	20	2.0	21	85	14	57	45	7	5	42	1.54
64186--64308	31	4.0	30	72	14	106	39	12	9	38	1.76
65308--65367	28	2.1	28	81	6	68	70	3	0	26	1.03
65311--65369	13	4.8	13	74	16	54	67	3	0	28	1.06
66740--66809	35	2.0	36	85	2	97	17	37	14	31	1.89
67893--68050	60	2.6	60	84	6	196	36	19	3	40	1.70
68177--68293	60	2.0	59	83	8	148	38	4	22	35	1.74
69895--69932	2	19.0	2	100	0	76	50	0	0	50	1.00
69952--70018	29	2.3	29	85	12	84	58	1	0	40	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75353--75457	30	3.5	30	98	0	201	42	16	6	34	1.74
76557--76602	20	2.3	20	84	0	56	45	0	2	52	1.13
76930--76957	12	2.3	12	100	0	56	17	28	28	25	1.98
77833--78201	183	2.0	183	92	2	607	45	8	3	42	1.52
86431--86497	20	3.3	20	73	8	73	43	22	14	19	1.87
86410--86517	40	2.7	41	81	7	132	42	20	16	20	1.89
86487--86539	21	2.5	21	81	6	72	45	13	18	22	1.84
86910--86960	21	2.5	21	93	3	86	17	19	15	47	1.83
92342--92971	53	11.7	53	88	5	849	26	28	14	29	1.95
92342--92971	108	5.9	108	91	3	970	26	28	14	29	1.95
92342--92975	161	3.9	161	91	2	954	27	28	14	29	1.95
92426--93079	161	4.1	160	81	9	661	26	28	15	29	1.96
92973--93373	51	7.8	51	88	0	505	21	26	19	32	1.97
92973--93373	102	3.9	102	89	0	559	21	26	19	32	1.97
93755--93943	36	5.2	36	87	2	229	21	19	22	35	1.96
94670--94973	124	2.4	124	88	1	448	23	26	17	32	1.97
105362--105403	7	5.9	7	91	2	66	45	0	0	54	0.99
106085--106173	22	4.0	22	94	1	142	25	28	25	20	1.99
106121--106161	13	3.5	13	75	25	54	24	26	26	21	2.00
107721--107765	21	2.1	21	87	0	63	15	24	28	31	1.96
108694--108735	16	2.5	17	80	3	50	35	26	0	38	1.57
110937--111025	22	4.0	22	97	1	151	24	28	26	20	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
110951--111013	13	5.5	13	68	27	61	25	26	26	20	1.99
112581--112625	21	2.1	21	87	0	63	15	24	28	31	1.96
113555--113596	16	2.5	17	80	3	50	35	26	0	38	1.57
115795--115883	22	4.0	22	97	1	151	24	28	26	20	1.99
115809--115871	13	5.5	13	68	27	61	25	26	26	20	1.99
117440--117484	21	2.1	21	87	0	63	15	24	28	31	1.96
121255--121467	109	2.0	109	84	1	284	40	7	18	32	1.79
121998--122055	27	2.2	27	87	6	84	51	3	1	43	1.28
123718--123747	15	2.0	15	93	0	51	26	10	26	36	1.88
124456--124539	22	4.0	21	70	16	57	64	1	1	33	1.09
126564--126652	36	2.4	38	75	21	98	49	4	0	46	1.22
126565--126648	35	2.6	31	72	26	75	46	4	0	48	1.23
128454--128492	15	2.7	15	84	15	55	46	2	0	51	1.14
128548--128607	21	2.8	21	78	12	68	28	1	3	66	1.17
128544--128633	14	6.1	14	72	16	67	33	1	3	62	1.19
130034--130104	15	5.0	14	73	20	58	29	1	2	66	1.15
131850--131889	21	1.9	21	84	0	53	30	7	5	57	1.48
133097--133134	3	13.3	3	88	5	53	28	2	0	68	1.03
133165--133212	24	2.0	24	95	0	87	39	16	0	43	1.48
135719--135766	15	3.4	14	78	21	55	25	0	2	72	0.95
138761--138799	3	13.3	3	86	5	53	28	2	0	69	1.02
138830--138877	24	2.0	24	95	0	87	39	16	0	43	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
148638--148671	2	17.0	2	100	0	68	50	0	0	50	1.00
149875--149922	25	1.9	25	95	0	87	27	10	8	54	1.63
151718--151761	21	2.0	23	86	8	65	47	9	2	40	1.48
151778--151860	21	4.0	21	75	6	69	26	2	22	48	1.63
151774--151872	28	3.6	28	74	15	82	27	2	24	46	1.63
151778--151859	14	5.9	15	73	17	61	25	2	23	48	1.63
152030--152071	2	21.5	2	95	4	77	50	0	0	50	1.00
152030--152080	17	3.1	17	88	8	61	47	0	3	49	1.20
153483--153562	29	2.8	29	96	0	142	38	13	15	32	1.86

Tables:   1

The End!