genome.fa.s7139.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007139.1 Hibiscus syriacus cultivar Beakdansim tig00018672_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74951

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8069--8109	21	2.0	20	85	4	55	63	2	31	2	1.20
15630--15656	14	1.9	14	100	0	54	7	33	7	51	1.58
25632--25683	24	2.2	24	82	0	59	50	19	11	19	1.77
25655--25746	24	3.8	24	89	2	123	41	18	16	23	1.90
25656--25764	48	2.3	48	82	6	114	43	18	14	23	1.87
28233--28257	13	1.9	13	100	0	50	12	24	48	16	1.79
30337--30434	24	4.1	25	81	6	105	44	16	15	23	1.85
33920--33971	24	2.2	24	82	0	59	50	17	11	21	1.77
33943--34034	24	3.8	24	88	2	114	41	17	16	25	1.89
38332--38431	24	4.2	24	84	5	78	45	19	13	23	1.84
38349--38440	48	1.9	48	86	4	132	42	18	15	23	1.88
38349--38436	24	3.7	24	86	3	106	42	19	14	23	1.88
38350--38463	48	2.4	47	82	7	115	45	17	13	23	1.83
39817--39865	24	2.1	23	84	3	62	61	10	0	28	1.29
40384--40422	20	2.1	19	86	13	55	41	15	7	35	1.76
42167--42232	30	2.2	30	86	0	87	33	24	31	10	1.89
55433--55587	81	1.9	81	89	0	238	28	21	14	35	1.93
55438--55604	81	2.1	81	83	0	208	28	22	13	35	1.92
55948--56191	46	5.3	46	91	1	398	22	22	11	43	1.84
55948--56191	93	2.6	92	92	0	398	22	22	11	43	1.84
56615--56707	42	2.2	41	82	1	105	25	24	11	37	1.90
59962--60022	28	2.2	28	100	0	122	42	9	24	22	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
65730--65791	20	2.9	21	83	7	72	17	24	37	20	1.94
72693--72781	46	2.0	46	90	2	144	28	25	19	26	1.99
73035--73068	17	2.1	16	88	5	50	58	23	8	8	1.56

Tables:   1

The End!