Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007142.1 Hibiscus syriacus cultivar Beakdansim tig00018679_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  102699

Tables:   1   

This is table  1  of  1  ( 48 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4501--4539
20
2.0
20
90
10
62
2
12
7
76
1.09
4495--4545
26
2.0
26
84
7
68
1
11
7
78
1.04
5032--5097
13
4.8
13
75
10
60
68
0
1
30
0.99
5031--5099
3
23.7
3
82
8
81
66
0
1
31
1.00
5385--6041
112
5.9
112
89
4
974
29
20
12
37
1.90
5383--6037
223
2.9
224
90
3
1013
29
20
12
37
1.90
5385--6041
335
2.0
331
89
4
998
29
20
12
37
1.90
6659--7247
81
7.2
83
90
4
914
34
21
13
30
1.92
6659--7247
163
3.6
165
91
3
930
34
21
13
30
1.92
6659--7254
244
2.4
245
91
3
945
34
21
13
30
1.92
7984--8029
19
2.7
16
83
10
56
52
8
6
32
1.58
18967--19003
15
2.7
15
88
12
53
62
8
5
24
1.44
18994--19044
18
2.9
17
75
16
50
72
1
0
25
0.95
20668--20706
20
2.0
20
90
10
62
2
12
7
76
1.09
20665--20712
26
1.9
24
84
16
62
2
12
8
77
1.08
21201--21285
3
28.7
3
90
2
136
65
0
1
32
1.00
25679--25710
7
4.6
7
92
0
55
40
0
0
59
0.97
25679--25718
14
2.9
14
92
0
62
37
0
0
62
0.95
25840--25902
10
6.1
10
81
5
72
25
6
1
66
1.24
25840--25902
21
3.0
20
83
4
72
25
6
1
66
1.24
25835--25900
31
2.1
32
83
13
84
24
7
1
66
1.26
37629--37669
22
1.9
22
85
5
57
31
29
12
26
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38526--38568
19
2.2
20
87
4
61
48
6
9
34
1.62
43320--43424
12
8.8
12
75
12
90
20
27
22
28
1.99
43319--43424
24
4.4
24
79
9
126
20
28
22
28
1.99
43316--43427
36
3.1
36
84
5
163
21
30
21
26
1.98
43560--43654
45
2.1
45
86
0
127
21
25
29
24
1.99
48760--48798
15
2.6
15
87
0
51
56
0
0
43
0.99
63710--63749
18
2.2
18
86
0
53
52
22
2
22
1.59
63915--64055
20
7.1
20
84
6
169
35
19
17
27
1.94
64170--64218
20
2.5
20
89
0
71
30
24
20
24
1.98
65615--65665
20
2.5
20
90
0
75
50
21
13
13
1.76
66069--66131
22
3.0
22
79
4
67
23
15
39
20
1.91
66317--66429
39
2.8
39
77
9
111
19
15
30
34
1.93
66318--66430
20
5.6
21
72
14
69
19
15
30
34
1.93
66303--66432
41
3.2
40
76
8
147
18
14
28
38
1.90
66526--66571
19
2.3
20
81
7
58
23
17
30
28
1.97
66694--66775
23
3.5
23
94
1
137
43
3
8
43
1.52
66741--67068
37
8.9
37
83
7
373
43
2
7
46
1.43
67077--67116
16
2.4
17
84
15
57
22
7
0
70
1.12
69687--70077
187
2.0
198
92
7
660
38
11
16
33
1.85
73546--73591
2
23.0
2
100
0
92
50
0
0
50
1.00
82721--82759
18
2.0
18
85
14
51
2
51
5
41
1.38
90019--90110
8
11.2
8
80
6
105
30
0
33
35
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90186--90705
170
3.1
169
85
1
693
27
18
20
34
1.95
92257--92304
17
3.1
17
80
14
59
60
0
0
39
0.97
92234--92301
34
2.1
34
86
13
99
61
0
0
38
0.96
100556--100595
21
1.9
21
85
10
55
35
10
2
52
1.48

Tables:   1

The End!