Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007145.1 Hibiscus syriacus cultivar Beakdansim tig00018687_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87154

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3353--3403
23
2.1
26
85
10
72
54
19
0
25
1.44
13232--13266
15
2.3
15
90
0
52
34
5
14
45
1.68
13272--13302
14
2.1
15
94
5
55
35
12
16
35
1.87
13347--13421
32
2.3
32
90
0
132
34
17
10
37
1.84
17658--17688
14
2.2
14
100
0
62
38
6
19
35
1.77
22601--22626
2
13.0
2
100
0
52
50
0
0
50
1.00
23024--23243
54
4.1
54
82
0
242
32
18
19
29
1.95
26898--26922
9
2.8
9
100
0
50
24
0
0
76
0.80
28951--28980
2
15.0
2
100
0
60
50
0
0
50
1.00
29422--29549
54
2.4
55
82
2
143
32
19
18
29
1.96
36298--36578
45
6.2
45
88
3
420
28
20
10
40
1.85
36298--36578
91
3.1
91
90
3
440
28
20
10
40
1.85
36298--36578
136
2.1
136
89
3
422
28
20
10
40
1.85
37839--37989
81
1.9
81
95
0
275
27
22
13
36
1.92
38150--38491
55
6.3
54
79
7
325
27
17
20
34
1.95
38150--38492
110
3.1
110
82
2
379
27
17
20
34
1.95
38178--38491
165
1.9
163
83
2
405
28
16
20
35
1.94
38462--39572
54
20.6
54
87
0
1434
32
19
18
29
1.95
39933--40071
74
1.9
75
84
4
192
25
22
17
35
1.95
55586--55617
16
2.0
16
100
0
64
25
12
18
43
1.85
58114--58142
6
4.8
6
100
0
58
65
34
0
0
0.93
60107--60303
43
4.7
43
76
6
154
29
14
19
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61243--61301
27
2.2
27
96
0
109
25
13
35
25
1.93
62837--62861
12
2.1
12
100
0
50
32
0
0
68
0.90
69800--69833
18
1.9
17
88
5
50
52
11
8
26
1.67
70333--70357
12
2.1
12
100
0
50
32
0
0
68
0.90
71230--71282
3
17.3
3
80
3
61
39
0
0
60
0.97
72519--72570
11
4.7
11
81
13
63
25
1
1
71
1.07
72529--72577
22
2.2
22
89
7
73
26
4
2
67
1.19
72519--72577
11
5.4
10
82
15
55
27
3
1
67
1.16
72583--72611
2
14.5
2
100
0
58
51
0
0
48
1.00
78723--78751
8
3.8
8
90
9
51
82
0
17
0
0.66
78723--78751
15
1.9
15
100
0
58
82
0
17
0
0.66
83406--83460
22
2.5
22
90
0
92
32
10
16
40
1.83
83974--84298
166
2.0
166
93
1
562
35
14
12
38
1.83
84301--85221
74
12.4
76
93
3
1506
23
19
21
35
1.96
85356--85405
3
16.7
3
85
8
66
34
0
0
66
0.92
85368--85417
25
2.1
25
82
10
61
44
0
0
56
0.99
86621--86672
11
4.7
11
81
13
63
25
1
1
71
1.07
86631--86679
22
2.2
22
89
7
73
26
4
2
67
1.19
86605--86672
33
2.0
36
86
13
99
26
2
1
69
1.12
86621--86679
11
5.4
10
82
15
55
27
3
1
67
1.16

Tables:   1

The End!