genome.fa.s7146.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007146.1 Hibiscus syriacus cultivar Beakdansim tig00018688_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87436

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5112--5193	23	3.6	23	88	0	119	28	24	26	20	1.99
5966--6013	19	2.5	19	100	0	96	20	25	22	31	1.98
9834--9877	23	1.9	23	85	0	61	29	25	25	20	1.99
21437--21500	23	2.8	23	76	4	67	37	4	20	37	1.74
22095--22158	30	2.1	30	91	0	101	37	9	18	34	1.83
23861--23910	14	3.6	14	86	0	64	24	32	34	10	1.88
23857--23910	28	1.9	28	88	0	81	24	33	31	11	1.90
24818--24852	18	1.9	18	88	11	54	68	2	0	28	1.04
25294--25331	20	1.9	20	88	0	58	42	10	23	23	1.85
25294--25337	20	2.3	19	84	7	54	43	9	25	22	1.82
26094--26162	20	3.4	19	79	13	75	43	8	23	24	1.82
27513--27583	36	2.0	36	85	0	97	42	12	1	43	1.51
27564--27601	17	2.2	17	100	0	76	44	7	0	47	1.32
28419--28805	183	2.1	184	93	2	665	45	8	2	43	1.47
35512--35574	30	2.1	30	100	0	126	41	20	15	22	1.90
46763--46813	21	2.5	20	77	6	57	52	5	7	33	1.54
52815--52860	20	2.3	20	85	7	58	41	4	13	41	1.63
52823--52861	20	2.0	20	90	10	62	35	2	15	46	1.60
54066--54100	18	2.0	18	88	5	54	20	25	25	28	1.99
54130--54162	7	4.9	7	85	7	50	18	27	27	27	1.98
61278--61336	19	3.1	18	81	16	57	20	23	28	27	1.99
61340--61381	19	2.2	19	95	0	75	23	52	19	4	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61378--61414	7	5.4	7	90	6	58	16	32	27	24	1.96
61378--61414	13	2.7	14	87	8	58	16	32	27	24	1.96
73415--73466	23	2.2	24	86	3	70	63	5	0	30	1.18
75296--75349	24	2.2	24	80	6	65	68	1	7	22	1.24
78254--78308	25	2.2	26	87	9	78	72	1	5	20	1.13
78267--78305	16	2.4	16	86	0	51	76	0	5	17	0.96
84351--84762	81	5.1	81	84	4	505	33	12	22	30	1.92

Tables:   1

The End!