genome.fa.s7147.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007147.1 Hibiscus syriacus cultivar Beakdansim tig00018692_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  109208

Tables:   1   

This is table  1  of  1  ( 51 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12201--12239	20	2.0	20	85	10	53	48	0	12	38	1.42
17498--17609	60	1.9	59	85	5	154	38	5	19	36	1.75
17444--17627	60	3.1	57	74	12	142	36	4	22	35	1.76
20089--20119	2	15.5	2	100	0	62	48	0	0	51	1.00
27173--27267	48	2.0	48	89	2	147	31	7	12	48	1.69
27663--27726	25	2.6	25	95	4	114	25	9	35	29	1.87
27663--27734	25	3.0	25	81	18	98	26	8	36	29	1.86
40828--40905	38	2.1	38	87	4	113	39	33	11	15	1.83
40938--41385	196	2.4	182	77	10	458	37	25	10	26	1.88
41949--42386	224	2.0	225	93	3	749	45	7	7	39	1.61
42618--42663	19	2.4	18	77	22	58	50	10	17	21	1.77
44965--45030	33	2.0	33	87	0	96	28	1	45	24	1.62
46818--46866	19	2.6	19	93	0	80	30	2	10	57	1.43
46985--48544	198	7.9	198	97	1	2855	36	15	16	31	1.90
49996--50063	21	3.4	18	69	21	55	36	8	35	19	1.83
49996--50093	6	16.3	6	80	0	70	36	7	34	21	1.81
50011--50097	3	29.0	3	77	0	84	35	5	34	24	1.79
49999--50089	42	2.2	42	91	0	146	35	7	35	21	1.83
49996--50093	18	5.4	18	78	0	88	36	7	34	21	1.81
51577--52271	183	3.8	183	96	1	1265	35	14	16	33	1.89
54840--54903	23	2.8	23	87	0	92	35	6	20	37	1.78
54840--54912	23	3.2	23	82	7	85	34	5	20	39	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55264--55327	23	2.8	23	87	0	92	35	6	20	37	1.78
55264--55336	23	3.2	23	82	7	85	34	5	20	39	1.76
55604--55654	25	2.0	25	92	0	84	33	7	19	39	1.81
55903--55937	18	1.9	18	88	0	52	31	5	11	51	1.61
56197--56283	39	2.2	39	95	0	156	48	20	13	17	1.81
61531--61563	15	2.2	15	100	0	66	30	12	9	48	1.71
61935--62002	29	2.3	29	84	0	91	39	10	14	35	1.80
69574--69648	10	7.7	10	67	21	52	58	21	10	9	1.59
69581--69647	16	4.2	16	90	0	98	59	22	8	8	1.55
69578--69642	32	2.0	32	93	0	112	58	23	10	7	1.57
71159--71213	24	2.3	24	90	0	83	56	20	9	14	1.65
71159--71220	24	2.6	24	78	14	74	53	20	11	14	1.72
71735--71759	9	2.8	9	100	0	50	0	24	56	20	1.43
76156--76519	179	2.0	179	93	1	613	38	14	14	33	1.85
76604--76670	29	2.3	29	100	0	134	31	10	13	44	1.77
80554--80581	3	9.3	3	100	0	56	35	0	0	64	0.94
82479--82524	3	15.3	3	95	0	83	65	0	2	32	1.05
87557--87601	20	2.1	21	80	19	58	53	8	6	31	1.58
87680--87720	22	2.0	22	85	9	59	56	0	2	41	1.13
94237--94316	21	3.7	22	79	8	85	22	35	26	16	1.95
98669--98710	2	21.0	2	100	0	84	50	0	0	50	1.00
104660--104713	17	3.3	16	80	10	56	62	9	3	24	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107062--107161	49	2.0	51	90	7	161	25	24	21	30	1.99
107065--107169	51	2.1	49	87	7	149	25	23	20	30	1.98
108024--108053	10	3.0	10	95	0	51	36	0	30	33	1.58
108167--108391	51	4.5	50	75	6	213	20	28	32	18	1.96
108210--108403	99	2.0	99	92	0	325	22	26	31	20	1.98
108545--108603	27	2.3	27	88	5	86	38	8	0	52	1.32
108775--108815	9	4.8	9	76	11	50	19	0	2	78	0.87

Tables:   1

The End!