Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007148.1 Hibiscus syriacus cultivar Beakdansim tig00018693_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  69380

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
290--355
33
2.0
33
97
2
125
45
6
18
30
1.73
8888--8927
20
2.0
20
85
9
55
42
2
0
55
1.13
9667--9755
33
2.6
35
87
3
119
42
4
10
42
1.58
9725--9780
23
2.6
21
86
10
85
42
1
12
42
1.53
9746--9817
35
2.0
37
89
10
114
41
4
12
41
1.62
9780--9836
21
2.6
22
86
13
82
38
5
14
42
1.68
9824--9848
12
2.1
12
100
0
50
40
8
8
44
1.63
9690--9856
56
2.9
57
87
5
243
42
4
11
41
1.61
9804--9895
33
2.7
34
81
8
89
44
5
10
39
1.63
9690--9925
112
2.1
112
80
7
255
42
4
11
41
1.61
9999--10049
3
16.7
3
88
11
77
33
0
0
66
0.92
9999--10049
14
3.6
14
87
12
77
33
0
0
66
0.92
9998--10053
25
2.2
25
87
6
87
32
0
0
67
0.91
18996--19237
45
5.4
45
89
0
367
21
21
11
45
1.84
25061--25296
45
5.2
45
87
0
346
21
22
11
44
1.84
29412--29451
21
1.9
21
89
0
62
10
25
40
25
1.86
41737--41777
14
2.9
15
78
7
50
60
2
0
36
1.10
42063--42093
16
1.9
16
93
0
53
19
12
19
48
1.81
43932--44004
36
2.0
36
84
10
96
47
4
2
45
1.36
44434--44475
9
4.7
9
80
8
50
64
0
0
35
0.94
44749--44811
29
2.1
31
85
5
85
52
7
3
36
1.47
44749--44790
18
2.3
19
76
12
52
52
4
2
40
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46282--46311
15
2.0
15
93
0
51
56
13
13
16
1.67
46616--46683
32
2.1
32
97
0
127
25
26
32
16
1.96
48196--48222
13
2.1
13
100
0
54
48
0
22
29
1.51
48843--48890
17
2.8
17
100
0
96
35
22
18
22
1.96
59425--59467
20
2.2
20
91
0
68
34
20
11
32
1.89
62086--62130
22
2.0
22
86
4
63
28
22
20
28
1.98
64437--64480
14
3.2
14
87
3
63
20
0
31
47
1.50
64442--64487
7
6.6
7
87
0
65
19
0
32
47
1.50
64540--64616
7
11.3
7
79
5
86
18
1
33
46
1.57
65971--66065
19
5.0
19
89
0
109
43
8
20
28
1.80
65971--66065
38
2.5
38
86
3
120
43
8
20
28
1.80
65981--66072
19
4.8
19
89
0
121
44
7
19
28
1.78
66090--66133
12
3.6
12
81
3
52
50
2
20
27
1.60
69079--69124
22
2.0
25
83
12
62
52
0
13
34
1.40

Tables:   1

The End!