genome.fa.s7149.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007149.1 Hibiscus syriacus cultivar Beakdansim tig00018699_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  59303

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
456--497	18	2.3	18	87	4	57	30	11	30	26	1.92
635--677	22	2.0	22	85	0	59	39	11	18	30	1.86
1024--1253	45	5.3	45	86	5	321	44	12	21	21	1.84
10125--10184	3	19.7	3	78	21	63	65	3	0	31	1.09
10121--10184	12	5.2	13	78	17	82	65	3	0	31	1.08
10127--10184	25	2.4	25	85	11	84	63	3	0	32	1.11
10231--10410	97	1.9	97	86	8	260	40	10	5	43	1.61
10233--10348	58	2.0	59	82	1	144	40	9	4	45	1.56
10352--10410	23	2.5	24	91	5	102	40	13	5	40	1.67
10373--10444	35	2.0	37	89	10	114	41	12	4	41	1.62
10234--10444	96	2.2	94	82	8	257	40	10	4	43	1.61
10330--10500	56	2.9	57	87	6	238	40	11	4	42	1.62
10410--10465	23	2.6	21	86	10	85	42	12	1	42	1.53
10435--10523	35	2.6	34	87	3	117	42	10	4	42	1.58
11263--11302	20	2.0	19	85	9	53	55	0	2	42	1.13
19888--19960	36	2.0	36	100	0	146	30	19	5	45	1.73
21069--21135	20	3.4	19	71	6	53	35	10	14	38	1.81
21274--21338	34	1.9	34	96	3	123	46	4	9	40	1.57
30247--30327	23	3.5	23	93	0	117	32	23	25	18	1.97
31008--31034	14	1.9	14	100	0	54	33	22	14	29	1.94
31083--31131	21	2.3	21	96	0	89	24	14	20	40	1.89
37152--37207	23	2.4	23	81	0	58	32	25	25	17	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41038--41217	91	2.0	91	88	4	269	29	11	18	40	1.86
43459--43483	2	12.5	2	100	0	50	52	0	48	0	1.00
54233--54931	350	2.0	346	94	1	1209	39	18	11	30	1.86
55078--55150	20	3.7	20	80	14	80	41	10	15	32	1.82
55261--55317	20	2.9	20	86	2	71	38	12	10	38	1.77
55280--55330	20	2.5	20	87	6	68	43	15	7	33	1.76
55409--55445	11	3.5	11	82	14	51	43	13	0	43	1.44
57146--57201	22	2.5	22	94	2	94	26	10	37	25	1.88
57867--57973	23	5.0	21	70	26	89	23	18	28	29	1.98
57856--57973	43	2.7	44	89	2	184	22	18	27	31	1.97

Tables:   1

The End!