genome.fa.s715.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000715.1 Hibiscus syriacus cultivar Beakdansim tig00001387_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  73707

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1044--1075	17	1.9	17	93	6	57	40	0	0	59	0.97
4380--4433	21	2.5	20	82	11	63	31	0	0	68	0.90
4588--4673	38	2.3	39	87	4	122	23	6	33	36	1.82
5743--5790	25	2.0	24	84	12	62	22	4	2	70	1.15
5877--5914	18	2.1	19	85	5	51	39	0	7	52	1.31
7609--7657	25	2.0	23	84	7	62	18	16	2	63	1.41
9554--9584	16	1.9	16	93	0	53	48	29	6	16	1.70
9753--10639	106	8.4	105	91	2	1314	32	24	18	23	1.97
9728--10639	211	4.3	210	89	2	1344	33	24	18	24	1.97
9728--10639	316	2.9	315	91	2	1432	33	24	18	24	1.97
11163--11205	18	2.5	16	82	14	50	34	0	0	65	0.93
11362--11446	38	2.3	38	89	2	127	23	7	34	35	1.82
19079--19107	15	1.9	15	100	0	58	58	13	27	0	1.36
23567--23605	17	2.4	17	95	4	71	43	0	5	51	1.24
23746--23918	87	2.0	87	97	0	328	39	18	21	20	1.93
30249--30303	12	4.2	12	78	15	56	54	7	0	38	1.28
30619--30823	111	1.8	111	85	4	288	23	17	30	27	1.97
30834--30989	66	2.4	63	83	8	179	37	17	21	24	1.94
33222--33345	31	4.0	31	90	2	187	37	21	20	20	1.95
41024--41100	3	25.7	3	100	0	154	66	0	0	33	0.92
43891--43928	20	1.9	20	84	10	51	42	0	2	55	1.14
46177--46234	25	2.4	25	75	13	66	62	1	1	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47381--47461	25	3.3	23	69	19	56	43	0	2	54	1.13
48187--48227	19	2.2	19	100	0	82	14	4	9	70	1.30
49598--49664	24	2.7	24	75	9	64	52	1	2	43	1.25
51442--51509	34	2.0	35	85	2	93	36	1	11	50	1.48
52104--52143	19	2.0	20	90	4	64	37	0	5	57	1.21
54635--54672	15	2.6	15	87	4	51	13	15	60	10	1.59
59134--59167	16	2.1	17	88	5	52	52	0	35	11	1.38
59813--59969	64	2.5	64	81	10	187	35	19	19	26	1.95
60350--60398	14	3.4	14	72	5	53	42	16	20	20	1.89
60346--60455	29	3.8	29	93	2	186	45	15	20	18	1.85
60540--60573	15	2.3	15	89	0	50	14	17	32	35	1.91
63437--63467	13	2.3	14	94	5	55	29	22	6	41	1.78
63460--63495	12	3.0	12	91	0	63	36	25	5	33	1.79
63803--63986	64	2.9	63	85	3	235	26	17	20	35	1.95
63803--64011	64	3.3	64	85	2	224	27	18	20	34	1.95
65710--65735	13	2.0	13	100	0	52	38	23	15	23	1.92
70179--70211	15	2.2	15	100	0	66	33	33	18	15	1.92
70356--70391	12	3.0	12	83	0	54	36	22	5	36	1.78
70697--70922	64	3.5	64	81	3	206	28	19	19	32	1.96

Tables:   1

The End!