genome.fa.s7150.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007150.1 Hibiscus syriacus cultivar Beakdansim tig00018700_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  115162

Tables:   1   

This is table  1  of  1  ( 78 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4242--4275	16	2.1	17	89	10	54	70	5	0	23	1.09
4333--4378	22	2.0	22	83	12	56	52	13	2	32	1.52
8120--8170	9	5.6	9	83	4	57	0	7	13	78	0.96
8136--8199	1	64.0	1	80	0	65	0	6	4	89	0.61
8110--8171	28	2.2	28	82	0	70	4	6	12	75	1.15
8127--8193	10	6.7	10	77	19	59	0	7	7	85	0.76
8120--8173	28	1.9	28	92	0	90	0	7	12	79	0.92
8120--8181	29	2.2	28	88	2	88	0	8	11	80	0.90
8120--8199	28	3.1	27	79	13	89	0	7	8	83	0.80
9044--9089	22	2.0	22	83	12	56	52	13	2	32	1.52
10892--11066	60	2.9	56	77	12	154	35	22	2	39	1.69
13820--13849	2	15.5	2	93	6	53	46	0	0	53	1.00
26181--26230	22	2.3	22	92	0	82	14	12	12	62	1.56
27849--27916	21	3.2	21	87	8	77	35	10	22	32	1.88
27861--27935	21	3.6	20	87	3	87	30	13	18	37	1.89
30194--30255	28	2.3	27	83	5	79	66	12	8	12	1.45
30247--30283	5	7.6	5	90	6	58	83	0	16	0	0.64
36683--36736	3	18.7	3	92	7	94	31	0	0	68	0.90
36927--36998	7	10.6	7	73	11	51	47	22	0	30	1.52
36926--36950	13	1.9	13	100	0	50	48	16	0	36	1.46
36939--36985	21	2.3	20	88	3	67	46	27	0	25	1.53
36925--36998	27	2.7	28	80	12	82	45	24	0	29	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36955--37005	20	2.5	21	90	9	79	47	25	0	27	1.53
36955--37005	14	3.7	14	76	5	50	47	25	0	27	1.53
36955--37011	20	2.8	19	84	7	60	47	26	0	26	1.52
40888--40968	40	2.0	40	85	0	108	23	27	24	24	2.00
58102--58159	23	2.7	20	78	17	71	29	18	17	34	1.94
58654--58687	13	2.6	13	90	9	52	47	11	2	38	1.55
68453--68577	47	2.8	45	85	6	162	29	22	8	40	1.82
68682--68803	40	3.0	40	97	0	226	33	27	15	23	1.95
72554--72658	6	17.3	6	75	8	70	4	17	2	75	1.10
72561--72611	23	2.2	24	89	10	79	3	17	3	74	1.12
72561--72617	29	2.0	29	86	10	82	5	17	3	73	1.16
72538--72623	34	2.5	34	81	9	102	6	19	2	70	1.21
72559--72656	19	5.4	19	77	9	73	5	17	3	74	1.13
72629--72660	17	1.9	17	93	6	57	0	15	3	81	0.82
72585--72661	19	3.8	19	76	20	75	5	15	2	76	1.07
73755--73785	6	5.2	6	100	0	62	32	35	16	16	1.91
75529--75654	47	2.8	45	85	5	164	29	23	7	39	1.83
75759--75880	40	3.0	40	97	0	235	34	27	15	22	1.95
83786--83831	20	2.3	20	92	0	74	19	32	4	43	1.71
89875--90224	183	1.9	183	95	0	628	27	21	21	30	1.98
91307--91422	36	3.2	36	75	3	99	27	16	10	45	1.79
91502--91588	37	2.4	37	88	1	122	25	20	13	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
91407--91654	102	2.4	105	87	4	369	31	20	12	35	1.90
91538--91717	66	2.8	66	91	4	278	31	21	12	35	1.90
91669--91754	37	2.4	36	82	5	104	29	20	11	38	1.88
91604--91883	100	2.8	102	93	2	467	31	19	12	36	1.89
91434--91819	166	2.3	169	91	4	622	31	20	12	36	1.90
91770--91855	36	2.4	36	86	3	111	25	18	13	41	1.88
91838--91896	30	2.0	30	86	6	84	40	16	10	32	1.82
91910--92024	36	3.1	36	82	4	149	29	19	12	39	1.88
92066--92154	33	2.6	35	85	8	137	40	17	11	30	1.85
92066--92179	31	3.4	32	85	7	140	35	19	12	32	1.89
92135--92321	67	2.7	67	82	3	221	29	21	11	37	1.89
92640--92872	106	2.2	107	86	2	326	35	26	17	21	1.95
94430--94471	21	2.0	21	86	13	61	21	7	0	71	1.09
98419--98768	183	1.9	183	95	0	637	27	21	21	30	1.98
100047--100133	37	2.4	37	86	1	113	25	21	12	40	1.89
99952--100199	102	2.4	105	86	4	351	30	19	13	36	1.90
100083--100262	66	2.8	66	90	4	269	31	21	11	35	1.89
100214--100299	37	2.4	36	82	5	104	29	20	11	38	1.88
100149--100428	100	2.8	102	92	2	458	31	19	12	37	1.89
99979--100364	166	2.3	169	90	4	597	31	19	12	36	1.89
100315--100400	36	2.4	36	86	3	111	25	18	13	41	1.88
100383--100441	30	2.0	30	86	6	84	40	16	10	32	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100455--100569	36	3.1	36	83	4	158	28	20	12	39	1.88
100611--100725	33	3.5	33	89	5	162	37	19	11	32	1.87
100680--100866	67	2.7	67	83	3	230	28	21	12	36	1.90
101029--101067	14	2.8	14	96	0	69	43	17	15	23	1.87
101198--101430	106	2.2	107	88	0	342	34	26	18	21	1.95
102776--102802	2	13.5	2	100	0	54	48	0	0	51	1.00
102969--103019	21	2.4	21	84	12	61	23	7	0	68	1.15
106712--106750	2	19.5	2	83	0	51	48	7	0	43	1.31
109129--109365	125	1.9	125	86	1	341	43	13	21	21	1.87
109565--109601	17	2.2	17	95	0	65	51	2	16	29	1.58
109873--109906	3	11.3	3	100	0	68	35	0	0	64	0.94
109935--110010	24	3.2	24	75	1	64	36	31	18	13	1.89

Tables:   1

The End!