genome.fa.s7153.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007153.1 Hibiscus syriacus cultivar Beakdansim tig00018715_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101695

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17198--17276	30	2.6	31	84	6	108	39	13	7	39	1.74
29319--29635	162	2.0	157	95	3	562	34	11	13	40	1.82
30035--30082	18	2.8	17	80	3	51	31	27	6	35	1.82
33046--33132	38	2.3	38	95	0	156	29	20	4	44	1.71
40623--41075	182	2.5	183	92	2	745	27	15	12	44	1.82
40947--41406	113	4.1	112	91	3	725	25	14	13	45	1.82
40938--41406	225	2.1	220	90	2	740	26	14	13	46	1.81
41615--41640	3	8.7	3	100	0	52	0	0	30	69	0.89
42285--42771	229	2.1	228	94	0	848	45	7	6	40	1.59
43050--43096	20	2.4	19	89	10	76	55	10	17	17	1.69
42838--43309	180	2.6	182	89	1	698	42	14	16	26	1.87
45511--45575	21	3.1	21	79	0	76	38	13	30	16	1.88
45609--45674	33	2.0	33	87	0	96	30	0	46	22	1.52
48380--48871	183	2.7	182	94	1	869	34	15	17	33	1.91
51340--51404	25	2.6	25	80	0	85	35	9	13	41	1.77
51682--51728	21	2.2	22	77	11	53	38	12	10	38	1.78
51746--51818	23	3.2	23	88	0	101	34	4	21	39	1.73
52246--52282	18	2.1	18	89	0	56	32	5	10	51	1.60
52238--52284	24	2.0	24	86	0	67	34	4	14	46	1.64
52541--52616	39	1.9	39	91	0	125	46	19	15	18	1.85
52694--52760	30	2.2	29	82	10	73	52	4	0	43	1.21
52906--52978	23	3.2	23	88	0	101	34	4	21	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53124--53190	30	2.2	29	82	10	73	52	4	0	43	1.21
60093--60130	19	2.0	19	100	0	76	10	26	31	31	1.90
66248--66308	2	30.5	2	100	0	122	50	0	0	49	1.00
67000--67093	30	3.1	30	90	3	136	21	20	26	31	1.98
69840--69877	19	2.0	19	100	0	76	10	31	31	26	1.90
74578--75395	273	3.0	273	96	0	1492	44	14	13	27	1.82
76345--76388	2	22.0	2	100	0	88	50	0	0	50	1.00
79769--80060	108	2.7	108	93	4	475	26	17	26	30	1.97
83241--83317	31	2.5	31	97	0	145	31	16	7	44	1.77
89347--89393	24	2.0	24	100	0	94	48	4	8	38	1.53
97001--97035	16	2.3	15	90	5	52	57	0	2	40	1.14
98355--98415	29	2.1	30	87	3	88	55	18	16	9	1.67

Tables:   1

The End!