genome.fa.s7157.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007157.1 Hibiscus syriacus cultivar Beakdansim tig00018740_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86392

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507--531	2	12.5	2	100	0	50	52	0	0	48	1.00
575--618	23	2.0	22	90	4	70	38	11	6	43	1.67
4234--4285	17	3.1	17	78	8	61	55	1	0	42	1.10
8310--8376	10	6.4	10	83	10	89	8	10	20	59	1.57
8961--8993	16	2.1	16	100	0	66	6	12	24	57	1.57
10535--10607	33	2.2	33	92	0	119	53	15	10	20	1.71
12129--12157	13	2.2	13	100	0	58	44	27	20	6	1.77
16705--16776	38	1.9	37	83	8	92	33	27	9	29	1.89
25998--26105	19	5.5	19	92	3	144	33	22	11	33	1.89
25779--26136	20	18.0	20	81	7	245	36	22	13	26	1.92
26102--26148	19	2.5	19	89	0	76	36	17	10	36	1.84
27085--27138	24	2.2	24	86	0	72	22	20	16	40	1.91
29403--29438	18	2.0	18	94	0	63	55	25	2	16	1.55
29731--29874	66	2.2	66	92	2	238	51	17	0	30	1.50
31257--31328	21	3.5	20	79	7	72	25	19	31	23	1.98
31233--31326	42	2.2	42	83	7	111	23	21	31	23	1.98
31273--31346	21	3.5	20	81	7	76	25	20	32	21	1.97
31256--31352	42	2.3	42	78	5	106	28	18	29	22	1.97
33887--33937	22	2.3	22	86	0	66	25	15	39	19	1.91
34097--34368	20	13.6	20	76	11	229	19	14	24	41	1.89
34156--34209	21	2.6	21	88	2	74	22	9	25	42	1.83
34097--34343	60	4.1	60	77	12	256	19	14	24	41	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43633--43667	2	17.5	2	100	0	70	51	0	0	48	1.00
46139--46320	97	1.9	95	91	2	301	45	14	23	17	1.85
46268--46354	33	2.6	33	92	1	138	41	18	22	17	1.90
46171--46450	129	2.2	130	88	3	413	44	16	22	16	1.86
46311--46588	97	2.9	97	89	1	416	46	15	20	16	1.83
49657--49706	21	2.4	21	96	0	91	4	30	20	46	1.69
64738--64785	25	1.9	25	100	0	96	20	22	12	43	1.86
65829--65944	42	2.8	42	87	0	160	37	20	20	21	1.95
75613--75668	29	1.9	29	85	7	78	30	12	5	51	1.61
76707--76773	23	2.9	22	80	8	80	41	20	11	25	1.87
83261--83296	17	2.1	18	94	5	65	33	0	5	61	1.19
86257--86331	36	2.1	36	82	5	89	49	1	2	46	1.24

Tables:   1

The End!