Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01000716.1 Hibiscus syriacus cultivar Beakdansim tig00001388_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 77000
ACGTcount: A:0.34, C:0.17, G:0.17, T:0.32
Found at i:3920 original size:22 final size:23
Alignment explanation
Indices: 3874--3935 Score: 60
Period size: 22 Copynumber: 2.8 Consensus size: 23
3864 TAAAATGTTA
*
3874 AATTATAAAGTATT-AAACGTGT
1 AATTATAAATTATTAAAACGTGT
3896 AATTATAAATTAGTTAAAAC-T-T
1 AATTATAAATTA-TTAAAACGTGT
*
3918 AA-TATAATTTAATTAAAA
1 AATTATAAATT-ATTAAAA
3936 TAATATATTT
Statistics
Matches: 35, Mismatches: 2, Indels: 7
0.80 0.05 0.16
Matches are distributed among these distances:
21 13 0.37
22 15 0.43
23 3 0.09
24 4 0.11
ACGTcount: A:0.52, C:0.03, G:0.06, T:0.39
Consensus pattern (23 bp):
AATTATAAATTATTAAAACGTGT
Found at i:11596 original size:2 final size:2
Alignment explanation
Indices: 11589--11614 Score: 52
Period size: 2 Copynumber: 13.0 Consensus size: 2
11579 TTATCCTTTC
11589 AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT
11615 TCGTGTAATA
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 24 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:14500 original size:20 final size:21
Alignment explanation
Indices: 14475--14522 Score: 89
Period size: 20 Copynumber: 2.3 Consensus size: 21
14465 TGTTTGTTAA
14475 GAATCATGGAATTGATT-GGG
1 GAATCATGGAATTGATTGGGG
14495 GAATCATGGAATTGATTGGGG
1 GAATCATGGAATTGATTGGGG
14516 GAATCAT
1 GAATCAT
14523 AATCGTTGGG
Statistics
Matches: 27, Mismatches: 0, Indels: 1
0.96 0.00 0.04
Matches are distributed among these distances:
20 17 0.63
21 10 0.37
ACGTcount: A:0.31, C:0.06, G:0.33, T:0.29
Consensus pattern (21 bp):
GAATCATGGAATTGATTGGGG
Found at i:17896 original size:43 final size:43
Alignment explanation
Indices: 17843--17960 Score: 121
Period size: 43 Copynumber: 2.7 Consensus size: 43
17833 AGGGAACTCG
* * * ** *
17843 ATTATGAAGGTAAAAAGTGGGATTGAAAAAA-TTAGAGACCTTA
1 ATTATAAAGGTAAAAAGTGAGATTAAAAAAAGCAAGA-ACCTCA
* *
17886 ATTATTAAGGTAGAAAGTGAGATTAAAAAAAGCAAGAACCTCA
1 ATTATAAAGGTAAAAAGTGAGATTAAAAAAAGCAAGAACCTCA
* *
17929 ATTATAAAGGTAAAAAATAAGATTTAAAAAAA
1 ATTATAAAGGTAAAAAGTGAGA-TTAAAAAAA
17961 TAGATGTCTC
Statistics
Matches: 62, Mismatches: 11, Indels: 3
0.82 0.14 0.04
Matches are distributed among these distances:
43 50 0.81
44 12 0.19
ACGTcount: A:0.53, C:0.05, G:0.18, T:0.24
Consensus pattern (43 bp):
ATTATAAAGGTAAAAAGTGAGATTAAAAAAAGCAAGAACCTCA
Found at i:25690 original size:30 final size:30
Alignment explanation
Indices: 25654--25725 Score: 117
Period size: 30 Copynumber: 2.4 Consensus size: 30
25644 CCCGAATGAC
*
25654 CTATCCAGAGGTCATAAAGATCCTCGGTAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
25684 CTATCCAGAGGTCATAAAGATCCTCGGCAA
1 CTATCCAGAGGTCATAAAGATCCTCGGCAA
* *
25714 CTGTCCATAGGT
1 CTATCCAGAGGT
25726 TCCGAAGAAC
Statistics
Matches: 39, Mismatches: 3, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
30 39 1.00
ACGTcount: A:0.31, C:0.25, G:0.21, T:0.24
Consensus pattern (30 bp):
CTATCCAGAGGTCATAAAGATCCTCGGCAA
Found at i:25750 original size:31 final size:31
Alignment explanation
Indices: 25712--25899 Score: 179
Period size: 31 Copynumber: 6.0 Consensus size: 31
25702 GATCCTCGGC
* *
25712 AACTGTCCATAGGTTCCGAAGAACCTAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
**
25743 AACTGTCCATATGTTCCTTAGAACATAGGTA
1 AACTGTCCATATGTTCCGAAGAACATAGGTA
*
25774 TACTGTCCATATG-TCTCGAA-AGACATAGGTA
1 AACTGTCCATATGTTC-CGAAGA-ACATAGGTA
**
25805 ATTA-TGTCCATATGTTCCTTAGAACATAGGTA
1 A--ACTGTCCATATGTTCCGAAGAACATAGGTA
*
25837 TACTGTCCATATG-TCTCGAA-AGACATAGGTA
1 AACTGTCCATATGTTC-CGAAGA-ACATAGGTA
** *
25868 ATTTTGTCCATATGTTCCGTAGAACATAGGTA
1 A-ACTGTCCATATGTTCCGAAGAACATAGGTA
25900 TACCCTCAAC
Statistics
Matches: 128, Mismatches: 17, Indels: 23
0.76 0.10 0.14
Matches are distributed among these distances:
30 7 0.05
31 71 0.55
32 43 0.34
33 7 0.05
ACGTcount: A:0.31, C:0.19, G:0.19, T:0.31
Consensus pattern (31 bp):
AACTGTCCATATGTTCCGAAGAACATAGGTA
Found at i:25825 original size:63 final size:63
Alignment explanation
Indices: 25746--25902 Score: 296
Period size: 63 Copynumber: 2.5 Consensus size: 63
25736 CTAGGTAAAC
25746 TGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACATAGGTAATTA
1 TGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACATAGGTAATTA
*
25809 TGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACATAGGTAATTT
1 TGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACATAGGTAATTA
*
25872 TGTCCATATGTTCCGTAGAACATAGGTATAC
1 TGTCCATATGTTCCTTAGAACATAGGTATAC
25903 CCTCAACTCT
Statistics
Matches: 92, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
63 92 1.00
ACGTcount: A:0.31, C:0.18, G:0.18, T:0.34
Consensus pattern (63 bp):
TGTCCATATGTTCCTTAGAACATAGGTATACTGTCCATATGTCTCGAAAGACATAGGTAATTA
Found at i:27209 original size:64 final size:64
Alignment explanation
Indices: 27057--27210 Score: 147
Period size: 64 Copynumber: 2.4 Consensus size: 64
27047 CAATAAGGGT
* * ** *
27057 ATGCATCGATGCACTA-CTGATGCATCGGTGCATAAAATACATTCGATGTTGTATTATTATTGGG
1 ATGCATCGATGCACTACCTG-TGCATCGATGCATAAAATACATTCGATGTTCTATTATTAAAGAG
* * * *
27121 ATGCATCGATGCA-TGCCTTATGCATCGATGCACT-AATTGCATTCGATGTTTCTATT-TTAAA-
1 ATGCATCGATGCACTACC-TGTGCATCGATGCA-TAAAATACATTCGATG-TTCTATTATTAAAG
27182 AG
63 AG
27184 AGTGCATCGATGCACTACCTGTGCATC
1 A-TGCATCGATGCACTACCTGTGCATC
27211 AATACACCTT
Statistics
Matches: 73, Mismatches: 11, Indels: 12
0.76 0.11 0.12
Matches are distributed among these distances:
63 3 0.04
64 59 0.81
65 11 0.15
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (64 bp):
ATGCATCGATGCACTACCTGTGCATCGATGCATAAAATACATTCGATGTTCTATTATTAAAGAG
Found at i:32757 original size:8 final size:8
Alignment explanation
Indices: 32744--32776 Score: 57
Period size: 8 Copynumber: 4.1 Consensus size: 8
32734 TGAGTTCATT
32744 CTTTCTAG
1 CTTTCTAG
32752 CTTTCTAG
1 CTTTCTAG
*
32760 CTTGCTAG
1 CTTTCTAG
32768 CTTTCTAG
1 CTTTCTAG
32776 C
1 C
32777 CTTGTCGGCT
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
8 23 1.00
ACGTcount: A:0.12, C:0.27, G:0.15, T:0.45
Consensus pattern (8 bp):
CTTTCTAG
Found at i:34583 original size:20 final size:20
Alignment explanation
Indices: 34489--34857 Score: 458
Period size: 20 Copynumber: 18.4 Consensus size: 20
34479 GATTTTCCAT
* ** *
34489 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
34509 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
34529 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
34549 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
**
34569 AATCGCAACGCGTATGGGTA
1 AATCGCAACGCGTATCCGTA
*
34589 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
34609 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
34629 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* *
34649 AACCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
34669 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
34689 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
34709 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
34729 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
34749 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
34769 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
34789 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
34809 AATCGCAACG-ATAATCCGTA
1 AATCGCAACGCGT-ATCCGTA
* * *
34829 AATCGCAACGAGAATCTGTA
1 AATCGCAACGCGTATCCGTA
*
34849 AATCACAAC
1 AATCGCAAC
34858 ACTGAAATTT
Statistics
Matches: 305, Mismatches: 36, Indels: 16
0.85 0.10 0.04
Matches are distributed among these distances:
19 3 0.01
20 299 0.98
21 3 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:35579 original size:24 final size:24
Alignment explanation
Indices: 35540--35586 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
35530 AAATTTGGTC
35540 TTGGTCAATATCCGGACTTTGATA
1 TTGGTCAATATCCGGACTTTGATA
*
35564 TTGGTCAATA-CACGGATTTTGAT
1 TTGGTCAATATC-CGGACTTTGAT
35587 GATGTTTCAG
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.26, C:0.15, G:0.21, T:0.38
Consensus pattern (24 bp):
TTGGTCAATATCCGGACTTTGATA
Found at i:35778 original size:12 final size:12
Alignment explanation
Indices: 35761--35785 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
35751 ATATAATCCT
35761 GAAGAAGAAAAA
1 GAAGAAGAAAAA
35773 GAAGAAGAAAAA
1 GAAGAAGAAAAA
35785 G
1 G
35786 TCCCCGAAGA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.72, C:0.00, G:0.28, T:0.00
Consensus pattern (12 bp):
GAAGAAGAAAAA
Found at i:38119 original size:34 final size:33
Alignment explanation
Indices: 38067--38156 Score: 128
Period size: 34 Copynumber: 2.7 Consensus size: 33
38057 CGGAAAATAC
*
38067 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA
1 AATCGCAATGCGAAATGAAAATCCCAACGA-GAA
* *
38100 AATCGCAATGCGGAAATGAAAATCGCAACGAGAG
1 AATCGCAATGC-GAAATGAAAATCCCAACGAGAA
38134 AATCGCAATGCGAAATGAAAATC
1 AATCGCAATGCGAAATGAAAATC
38157 GCAATGCGAA
Statistics
Matches: 52, Mismatches: 3, Indels: 4
0.88 0.05 0.07
Matches are distributed among these distances:
33 22 0.42
34 29 0.56
35 1 0.02
ACGTcount: A:0.47, C:0.20, G:0.20, T:0.13
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCCCAACGAGAA
Found at i:38154 original size:33 final size:33
Alignment explanation
Indices: 38067--38319 Score: 149
Period size: 33 Copynumber: 7.5 Consensus size: 33
38057 CGGAAAATAC
* *
38067 AATCGCAACGCGAAATGAAAATCCCAACATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACATGAA
*
38100 AATCGCAATGCGGAAATGAAAATCGCAACGA-GAG
1 AATCGCAATGC-GAAATGAAAATCGCAAC-ATGAA
38134 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--C---ATGAA
* * *
38172 AATCGCAACGAGAGAATCG-CAAT-GCGAA-ATGAA
1 AATCGCAATGCGA-AAT-GAAAATCGC-AACATGAA
38205 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--C---ATGAA
38238 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--C---ATGAA
*
38271 AATCGCAATGCGAAATGAAAATCGCAACGA-GAT
1 AATCGCAATGCGAAATGAAAATCGCAAC-ATGAA
38304 AATCGCAATGCGAAAT
1 AATCGCAATGCGAAAT
38320 TATAAACGCA
Statistics
Matches: 187, Mismatches: 11, Indels: 44
0.77 0.05 0.18
Matches are distributed among these distances:
27 5 0.03
28 3 0.02
30 2 0.01
31 2 0.01
33 103 0.55
34 30 0.16
35 7 0.04
36 2 0.01
37 1 0.01
38 23 0.12
39 8 0.04
40 1 0.01
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (33 bp):
AATCGCAATGCGAAATGAAAATCGCAACATGAA
Found at i:38182 original size:52 final size:52
Alignment explanation
Indices: 38095--38278 Score: 235
Period size: 52 Copynumber: 3.6 Consensus size: 52
38085 AAATCCCAAC
38095 ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
38148 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
*
38200 ATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAA--CGAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA--CG--A-GAGAATCGCAATGCGAA
38250 A-G--AATCGCAATGCGAAATGAAAATCGCAA
1 ATGAAAATCGCAATGCGAAATGAAAATCGCAA
38279 TGCGAAATGA
Statistics
Matches: 120, Mismatches: 1, Indels: 21
0.85 0.01 0.15
Matches are distributed among these distances:
47 16 0.13
49 9 0.08
50 11 0.09
51 1 0.01
52 67 0.56
53 16 0.13
ACGTcount: A:0.47, C:0.17, G:0.22, T:0.13
Consensus pattern (52 bp):
ATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGAA
Found at i:38191 original size:14 final size:14
Alignment explanation
Indices: 38172--38259 Score: 50
Period size: 14 Copynumber: 5.6 Consensus size: 14
38162 GCGAAATGAA
38172 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
38186 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
38205 AATCGCAACGAAAG
1 AATCGCAACGAGAG
*
38219 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
38238 AATCGCAACGAAAG
1 AATCGCAACGAGAG
38252 AATCGCAA
1 AATCGCAA
38260 TGCGAAATGA
Statistics
Matches: 57, Mismatches: 7, Indels: 20
0.68 0.08 0.24
Matches are distributed among these distances:
14 26 0.46
15 2 0.04
16 4 0.07
17 4 0.07
18 2 0.04
19 19 0.33
ACGTcount: A:0.48, C:0.19, G:0.22, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:38231 original size:85 final size:85
Alignment explanation
Indices: 38067--38319 Score: 365
Period size: 85 Copynumber: 3.0 Consensus size: 85
38057 CGGAAAATAC
*
38067 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAAAATCGCAATGCGGAAATGAAAATCGCAACGA
1 AATCGCAA-GCGAAATGAAAATCGCAACGATGAAAATCGCAATGC-GAAATGAAAATCGCAACGA
38131 GAGAATCGCAATGCGAAATGAA
64 GAGAATCGCAATGCGAAATGAA
* *
38153 AATCGCAATGCGAAATGAAAATCGCAACGA-GAGAATCGCAATGCGAAATGAAAATCGCAACGAA
1 AATCGCAA-GCGAAATGAAAATCGCAACGATGAAAATCGCAATGCGAAATGAAAATCGCAACGAG
38217 AGAATCGCAATGCGAAATGAA
65 AGAATCGCAATGCGAAATGAA
38238 AATCGCAA-CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAAC
1 AATCGCAAGCGAAATGAAAATCGCAA--CG--ATGAAAATCGCAATGCGAAATGAAAATCGCAAC
*
38299 GAGATAATCGCAATGCGAAAT
62 GAGAGAATCGCAATGCGAAAT
38320 TATAAACGCA
Statistics
Matches: 154, Mismatches: 7, Indels: 13
0.89 0.04 0.07
Matches are distributed among these distances:
80 8 0.05
82 3 0.02
83 5 0.03
84 1 0.01
85 97 0.63
86 39 0.25
87 1 0.01
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (85 bp):
AATCGCAAGCGAAATGAAAATCGCAACGATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGA
GAATCGCAATGCGAAATGAA
Found at i:38311 original size:66 final size:69
Alignment explanation
Indices: 38134--38297 Score: 248
Period size: 66 Copynumber: 2.4 Consensus size: 69
38124 GCAACGAGAG
*
38134 AATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAACGAAAGAATCGCAATGCGA
38199 AATGAA
64 AATGAA
38205 AATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGA
1 AATCGCAATGCGAAATGAAAATCGCAA-GCG-AATGAAAATCGCAACGAAAGAATCGCAATGCGA
38265 AATGAA
64 AATGAA
38271 AATCGCAATGCGAAATGAAAATCGCAA
1 AATCGCAATGCGAAATGAAAATCGCAA
38298 CGAGATAATC
Statistics
Matches: 87, Mismatches: 1, Indels: 10
0.89 0.01 0.10
Matches are distributed among these distances:
66 59 0.68
68 6 0.07
69 6 0.07
71 16 0.18
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.13
Consensus pattern (69 bp):
AATCGCAATGCGAAATGAAAATCGCAAGCGAATGAAAATCGCAACGAAAGAATCGCAATGCGAAA
TGAA
Found at i:38335 original size:52 final size:52
Alignment explanation
Indices: 38067--38319 Score: 216
Period size: 52 Copynumber: 4.9 Consensus size: 52
38057 CGGAAAATAC
* *
38067 AATCGCAACGCGAAATGAAAATCCCAAC-ATGAA-AATCGCAATGCGGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGA--AAGAATCGCAATGC-GAAATGAA
*
38120 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
*
38172 AATCGCAA--CG--A-GAGAATCGCAATGCGAAATGAAAATCGCAA--CGAAA-G--
1 AATCGCAATGCGAAATGAAAATCGCAA--CGAAA-G--AATCGCAATGCGAAATGAA
38219 AATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAA
* *
38271 AATCGCAATGCGAAATGAAAATCGCAACGAGATAATCGCAATGCGAAAT
1 AATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAAT
38320 TATAAACGCA
Statistics
Matches: 178, Mismatches: 5, Indels: 35
0.82 0.02 0.16
Matches are distributed among these distances:
47 16 0.09
48 9 0.05
49 12 0.07
50 12 0.07
51 4 0.02
52 106 0.60
53 19 0.11
ACGTcount: A:0.47, C:0.19, G:0.21, T:0.13
Consensus pattern (52 bp):
AATCGCAATGCGAAATGAAAATCGCAACGAAAGAATCGCAATGCGAAATGAA
Found at i:38435 original size:19 final size:19
Alignment explanation
Indices: 38326--38427 Score: 151
Period size: 19 Copynumber: 5.6 Consensus size: 19
38316 AAATTATAAA
38326 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
38345 CCGCATTGCGATTTTCATTT
1 -CGCATTGCGATTTTCATTT
*
38365 CGCATTGCGA--TTC-TCT
1 CGCATTGCGATTTTCATTT
38381 CG--TTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
38398 CGCATTGCGATTTTCATTT
1 CGCATTGCGATTTTCATTT
38417 CGCATTGCGAT
1 CGCATTGCGAT
38428 AGTCATTTTT
Statistics
Matches: 75, Mismatches: 2, Indels: 11
0.85 0.02 0.12
Matches are distributed among these distances:
14 6 0.08
16 7 0.09
17 7 0.09
19 36 0.48
20 19 0.25
ACGTcount: A:0.15, C:0.24, G:0.18, T:0.44
Consensus pattern (19 bp):
CGCATTGCGATTTTCATTT
Found at i:38553 original size:14 final size:14
Alignment explanation
Indices: 38534--38570 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
38524 CATCAATTAC
38534 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
38548 ACAAATCATCTTTT
1 ACAAATCAACTTTT
38562 ACAAATCAA
1 ACAAATCAA
38571 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.22, G:0.00, T:0.32
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:40563 original size:14 final size:14
Alignment explanation
Indices: 40544--40600 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
40534 GCGAAATGAA
*
40544 AATCGCAACGACAG
1 AATCGCAACGAAAG
40558 AATCGCAATGCGAAATG
1 AATCGCAA--CGAAA-G
40575 AAAATCGCAACGAAAG
1 --AATCGCAACGAAAG
40591 AATCGCAACG
1 AATCGCAACG
40601 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 18 0.49
16 5 0.14
17 6 0.16
19 8 0.22
ACGTcount: A:0.46, C:0.23, G:0.21, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAAAG
Found at i:40571 original size:33 final size:33
Alignment explanation
Indices: 40525--40617 Score: 168
Period size: 33 Copynumber: 2.8 Consensus size: 33
40515 GCGAAACCAA
*
40525 AATCGCAACGCGAAATGAAAATCGCAACGACAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
*
40558 AATCGCAATGCGAAATGAAAATCGCAACGAAAG
1 AATCGCAACGCGAAATGAAAATCGCAACGAAAG
40591 AATCGCAACGCGAAATGAAAATCGCAA
1 AATCGCAACGCGAAATGAAAATCGCAA
40618 TGCGATTTTG
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 57 1.00
ACGTcount: A:0.47, C:0.22, G:0.20, T:0.11
Consensus pattern (33 bp):
AATCGCAACGCGAAATGAAAATCGCAACGAAAG
Found at i:40582 original size:19 final size:19
Alignment explanation
Indices: 40488--40622 Score: 128
Period size: 19 Copynumber: 7.6 Consensus size: 19
40478 TAGTTTACTT
* *
40488 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAA-TGAAAA
**
40508 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAATGAAAA
40527 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
40546 TCGCAA--CGACA-G--AA
1 TCGCAACGCGAAATGAAAA
*
40560 TCGCAATGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
40579 TCGCAA--CGAAA-G--AA
1 TCGCAACGCGAAATGAAAA
40593 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAATGAAAA
*
40612 TCGCAATGCGA
1 TCGCAACGCGA
40623 TTTTGGTTTC
Statistics
Matches: 97, Mismatches: 8, Indels: 21
0.77 0.06 0.17
Matches are distributed among these distances:
14 16 0.16
16 11 0.11
17 11 0.11
19 47 0.48
20 12 0.12
ACGTcount: A:0.46, C:0.24, G:0.19, T:0.11
Consensus pattern (19 bp):
TCGCAACGCGAAATGAAAA
Found at i:40640 original size:19 final size:19
Alignment explanation
Indices: 40618--40746 Score: 116
Period size: 19 Copynumber: 7.3 Consensus size: 19
40608 AAAATCGCAA
40618 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
40637 TGCGATCTT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
40651 TGCGATTTTGGTTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
40670 TGCGATTCT-G--T--CGT
1 TGCGATTTTGGTTTCGCGT
**
40684 TGCGATTTTCATTTCGCGT
1 TGCGATTTTGGTTTCGCGT
*
40703 TGCGATTTTGGTTTCACGT
1 TGCGATTTTGGTTTCGCGT
* *
40722 TGCGATTTTAAGTTTCGTGT
1 TGCGATTTT-GGTTTCGCGT
40742 TGCGA
1 TGCGA
40747 AAGTAAACTA
Statistics
Matches: 88, Mismatches: 11, Indels: 21
0.73 0.09 0.17
Matches are distributed among these distances:
14 22 0.25
15 1 0.01
16 2 0.02
17 2 0.02
18 2 0.02
19 47 0.53
20 12 0.14
ACGTcount: A:0.09, C:0.17, G:0.28, T:0.46
Consensus pattern (19 bp):
TGCGATTTTGGTTTCGCGT
Found at i:40660 original size:33 final size:33
Alignment explanation
Indices: 40618--40709 Score: 150
Period size: 33 Copynumber: 2.8 Consensus size: 33
40608 AAAATCGCAA
40618 TGCGATTTTGGTTTCGCGTTGCGA-TCTTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTC-TGTCGT
40651 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
1 TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
**
40684 TGCGATTTTCATTTCGCGTTGCGATT
1 TGCGATTTTGGTTTCGCGTTGCGATT
40710 TTGGTTTCAC
Statistics
Matches: 56, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
33 54 0.96
34 2 0.04
ACGTcount: A:0.08, C:0.18, G:0.28, T:0.46
Consensus pattern (33 bp):
TGCGATTTTGGTTTCGCGTTGCGATTCTGTCGT
Found at i:40892 original size:93 final size:93
Alignment explanation
Indices: 40778--41244 Score: 918
Period size: 93 Copynumber: 5.0 Consensus size: 93
40768 GCAAATTGAA
40778 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
40843 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
40871 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
40936 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
40964 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
41029 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
41057 ACTTTCAACCAAAAGACAAAACAAAGACAAATA-TATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
41121 GCAGAATTGGCAGCAACCGAACAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
41149 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
*
41214 GCAGAATTGGCAGCAACCGAATAAATTT
66 GCAGAATTGGCAGCAACCGAACAAATTT
41242 ACT
1 ACT
41245 AAGCAATCTA
Statistics
Matches: 372, Mismatches: 1, Indels: 2
0.99 0.00 0.01
Matches are distributed among these distances:
92 92 0.25
93 280 0.75
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (93 bp):
ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
GCAGAATTGGCAGCAACCGAACAAATTT
Found at i:41215 original size:185 final size:186
Alignment explanation
Indices: 40778--41244 Score: 918
Period size: 185 Copynumber: 2.5 Consensus size: 186
40768 GCAAATTGAA
40778 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
40843 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
66 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
40908 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
131 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
40964 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
41029 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATA-TAT
66 GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
41093 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
131 TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
41149 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
1 ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
*
41214 GCAGAATTGGCAGCAACCGAATAAATTTACT
66 GCAGAATTGGCAGCAACCGAACAAATTTACT
41245 AAGCAATCTA
Statistics
Matches: 280, Mismatches: 1, Indels: 1
0.99 0.00 0.00
Matches are distributed among these distances:
185 154 0.55
186 126 0.45
ACGTcount: A:0.46, C:0.19, G:0.13, T:0.22
Consensus pattern (186 bp):
ACTTTCAACCAAAAGACAAAACAAAGACAAATACTATTTCACAGTGTTAAAGAATACACAGTTTA
GCAGAATTGGCAGCAACCGAACAAATTTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAT
TTCACAGTGTTAAAGAATACACAGTTTAGCAGAATTGGCAGCAACCGAACAAATTT
Found at i:42966 original size:14 final size:14
Alignment explanation
Indices: 42947--43036 Score: 72
Period size: 14 Copynumber: 5.7 Consensus size: 14
42937 TTGAAATGAA
42947 AATCGCAACGAGAG
1 AATCGCAACGAGAG
42961 AATCGCAACGCGAGATG
1 AATCGCAA--CGAGA-G
42978 ACAATCGCAACGAGAG
1 --AATCGCAACGAGAG
*
42994 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
43013 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
43027 AATCGTAACG
1 AATCGCAACG
43037 CTAAATGAAA
Statistics
Matches: 63, Mismatches: 3, Indels: 20
0.73 0.03 0.23
Matches are distributed among these distances:
14 27 0.43
15 1 0.02
16 8 0.13
17 8 0.13
18 1 0.02
19 18 0.29
ACGTcount: A:0.42, C:0.22, G:0.26, T:0.10
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:42984 original size:33 final size:33
Alignment explanation
Indices: 42939--43053 Score: 194
Period size: 33 Copynumber: 3.5 Consensus size: 33
42929 TCTTTTGGTT
42939 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
* *
42972 GAGATGACAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
43005 GAAATGAAAATCGCAACGAGAGAATCGTAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
*
43038 TAAATGAAAATCGCAA
1 GAAATGAAAATCGCAA
43054 TGCGATTTTG
Statistics
Matches: 76, Mismatches: 6, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
33 76 1.00
ACGTcount: A:0.45, C:0.20, G:0.23, T:0.11
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:42985 original size:19 final size:18
Alignment explanation
Indices: 42946--43027 Score: 72
Period size: 19 Copynumber: 4.9 Consensus size: 18
42936 GTTGAAATGA
42946 AAATCGCAA--CGAGA-G
1 AAATCGCAACGCGAGATG
42961 -AATCGCAACGCGAGATG
1 AAATCGCAACGCGAGATG
42978 ACAATCGCAA--CGAGA-G
1 A-AATCGCAACGCGAGATG
*
42994 -AATCGCAACGCGAAATG
1 AAATCGCAACGCGAGATG
*
43011 AAAATCGCAACGAGAGA
1 -AAATCGCAACGCGAGA
43028 ATCGTAACGC
Statistics
Matches: 54, Mismatches: 3, Indels: 16
0.74 0.04 0.22
Matches are distributed among these distances:
14 16 0.30
16 10 0.19
17 7 0.13
19 21 0.39
ACGTcount: A:0.44, C:0.22, G:0.26, T:0.09
Consensus pattern (18 bp):
AAATCGCAACGCGAGATG
Found at i:43089 original size:14 final size:14
Alignment explanation
Indices: 43070--43124 Score: 56
Period size: 14 Copynumber: 3.6 Consensus size: 14
43060 TTTGGTTTCG
43070 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
43084 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
43103 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
43117 CGTTGCGA
1 CGTTGCGA
43125 CAGTCATTCT
Statistics
Matches: 34, Mismatches: 2, Indels: 10
0.74 0.04 0.22
Matches are distributed among these distances:
14 18 0.53
16 3 0.09
17 3 0.09
19 10 0.29
ACGTcount: A:0.09, C:0.25, G:0.24, T:0.42
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:43102 original size:33 final size:33
Alignment explanation
Indices: 43054--43124 Score: 124
Period size: 33 Copynumber: 2.2 Consensus size: 33
43044 AAAATCGCAA
**
43054 TGCGATTTTGGTTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
43087 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
1 TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
43120 TGCGA
1 TGCGA
43125 CAGTCATTCT
Statistics
Matches: 36, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 36 1.00
ACGTcount: A:0.08, C:0.23, G:0.25, T:0.44
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCGTTGCGATTCTCTCGT
Found at i:43132 original size:33 final size:33
Alignment explanation
Indices: 43065--43146 Score: 119
Period size: 33 Copynumber: 2.5 Consensus size: 33
43055 GCGATTTTGG
***
43065 TTTCGCGTTGCGATTCTCTCGTTGCGATTTTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
43098 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
1 TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
*
43131 TTCTCTCGTTGCGATT
1 TT-TCGCGTTGCGATT
43147 TTCATTTATC
Statistics
Matches: 44, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
33 32 0.73
34 12 0.27
ACGTcount: A:0.10, C:0.26, G:0.22, T:0.43
Consensus pattern (33 bp):
TTTCGCGTTGCGATTCTCTCGTTGCGACAGTCA
Found at i:43151 original size:20 final size:20
Alignment explanation
Indices: 43077--43165 Score: 75
Period size: 20 Copynumber: 4.8 Consensus size: 20
43067 TCGCGTTGCG
43077 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
43097 ATT-TCGCGTTGCG------
1 ATTCTCTCGTTGCGATTTTC
***
43110 ATTCTCTCGTTGCGACAGTC
1 ATTCTCTCGTTGCGATTTTC
43130 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGATTTTC
*
43150 ATTTATCTCGTTGCGA
1 A-TTCTCTCGTTGCGA
43166 CTCTTCTGCA
Statistics
Matches: 55, Mismatches: 6, Indels: 15
0.72 0.08 0.20
Matches are distributed among these distances:
13 3 0.05
14 9 0.16
19 9 0.16
20 21 0.38
21 13 0.24
ACGTcount: A:0.12, C:0.25, G:0.19, T:0.44
Consensus pattern (20 bp):
ATTCTCTCGTTGCGATTTTC
Found at i:43287 original size:33 final size:33
Alignment explanation
Indices: 43245--43315 Score: 106
Period size: 33 Copynumber: 2.2 Consensus size: 33
43235 AATACTAACT
*
43245 TGAAAATCGCAACGAGAGAATAGCAACGCGAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
* * *
43278 TGAAAATCGCAACGACAGAATCGTAACGCTAAA
1 TGAAAATCGCAACGACAGAATAGCAACGCGAAA
43311 TGAAA
1 TGAAA
43316 TCTAAGTGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 34 1.00
ACGTcount: A:0.48, C:0.18, G:0.21, T:0.13
Consensus pattern (33 bp):
TGAAAATCGCAACGACAGAATAGCAACGCGAAA
Found at i:45653 original size:60 final size:61
Alignment explanation
Indices: 45549--45663 Score: 151
Period size: 60 Copynumber: 1.9 Consensus size: 61
45539 CAACTATTTA
** *
45549 TTAAATTTCTTAATTATTAAAAGTTACAAAATGATCTTAGGACTA-TAATATGTTATTTTG
1 TTAAATTTCTTAATTATTAAAAGTTACAAAATGATCACACGACTATTAATATGTTATTTTG
* * * * *
45609 TTAAGTTTTTTAATTATTAAAAGTTACAAAATGCTCACCCGACTATTCATATGTT
1 TTAAATTTCTTAATTATTAAAAGTTACAAAATGATCACACGACTATTAATATGTT
45664 CTAAACTTGT
Statistics
Matches: 46, Mismatches: 8, Indels: 1
0.84 0.15 0.02
Matches are distributed among these distances:
60 38 0.83
61 8 0.17
ACGTcount: A:0.37, C:0.10, G:0.10, T:0.43
Consensus pattern (61 bp):
TTAAATTTCTTAATTATTAAAAGTTACAAAATGATCACACGACTATTAATATGTTATTTTG
Found at i:46700 original size:16 final size:16
Alignment explanation
Indices: 46681--46722 Score: 50
Period size: 16 Copynumber: 2.6 Consensus size: 16
46671 ATTAGACTAA
46681 AAATTATAA-TATCATT
1 AAATTATAATTAT-ATT
*
46697 AAATTAAAATTATATT
1 AAATTATAATTATATT
46713 AAATATATAA
1 AAAT-TATAA
46723 ATTTTAAAAG
Statistics
Matches: 22, Mismatches: 2, Indels: 3
0.81 0.07 0.11
Matches are distributed among these distances:
16 15 0.68
17 7 0.32
ACGTcount: A:0.57, C:0.02, G:0.00, T:0.40
Consensus pattern (16 bp):
AAATTATAATTATATT
Found at i:46888 original size:15 final size:14
Alignment explanation
Indices: 46868--46909 Score: 57
Period size: 15 Copynumber: 2.9 Consensus size: 14
46858 TCTGAAAAAA
46868 TGAATTATTGGAATT
1 TGAATTA-TGGAATT
*
46883 TGAATTACTGTAATT
1 TGAATTA-TGGAATT
46898 TGAATTATGGAA
1 TGAATTATGGAA
46910 AATGAATTAC
Statistics
Matches: 24, Mismatches: 3, Indels: 1
0.86 0.11 0.04
Matches are distributed among these distances:
14 4 0.17
15 20 0.83
ACGTcount: A:0.36, C:0.02, G:0.19, T:0.43
Consensus pattern (14 bp):
TGAATTATGGAATT
Found at i:46950 original size:14 final size:14
Alignment explanation
Indices: 46928--46961 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
46918 ACATTTCTGG
* *
46928 AAAACGTTTTTCGT
1 AAAATGTTTTCCGT
46942 AAAATGTTTTCCGT
1 AAAATGTTTTCCGT
46956 AAAATG
1 AAAATG
46962 AATTACATTT
Statistics
Matches: 18, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
14 18 1.00
ACGTcount: A:0.35, C:0.12, G:0.15, T:0.38
Consensus pattern (14 bp):
AAAATGTTTTCCGT
Found at i:47364 original size:23 final size:22
Alignment explanation
Indices: 47329--47372 Score: 79
Period size: 23 Copynumber: 2.0 Consensus size: 22
47319 TAGATTATTA
47329 TATTAATATTAAATATATAAAT
1 TATTAATATTAAATATATAAAT
47351 TATTAATTATTAAATATATAAA
1 TATTAA-TATTAAATATATAAA
47373 AAATTATTAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
22 6 0.29
23 15 0.71
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (22 bp):
TATTAATATTAAATATATAAAT
Found at i:47378 original size:23 final size:23
Alignment explanation
Indices: 47330--47382 Score: 74
Period size: 23 Copynumber: 2.4 Consensus size: 23
47320 AGATTATTAT
**
47330 ATTAA-TATTAAATATATAAATT
1 ATTAATTATTAAATATATAAAAA
47352 ATTAATTATTAAATATATAAAAA
1 ATTAATTATTAAATATATAAAAA
47375 ATT-ATTAT
1 ATTAATTAT
47383 ATATTTATTA
Statistics
Matches: 28, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
22 10 0.36
23 18 0.64
ACGTcount: A:0.55, C:0.00, G:0.00, T:0.45
Consensus pattern (23 bp):
ATTAATTATTAAATATATAAAAA
Found at i:47451 original size:8 final size:8
Alignment explanation
Indices: 47440--47482 Score: 54
Period size: 8 Copynumber: 5.6 Consensus size: 8
47430 TTGATTATTT
47440 TATTATAA
1 TATTATAA
47448 TATTA-AA
1 TATTATAA
*
47455 -AATATAA
1 TATTATAA
*
47462 TATTATAT
1 TATTATAA
47470 TATTATAA
1 TATTATAA
47478 TATTA
1 TATTA
47483 ATAAATATAT
Statistics
Matches: 29, Mismatches: 4, Indels: 4
0.78 0.11 0.11
Matches are distributed among these distances:
6 3 0.10
7 4 0.14
8 22 0.76
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (8 bp):
TATTATAA
Found at i:47473 original size:30 final size:33
Alignment explanation
Indices: 47413--47491 Score: 110
Period size: 30 Copynumber: 2.5 Consensus size: 33
47403 ATAATATCTT
* *
47413 ATATTATTATAATATAATTGATTATTTTATTATA
1 ATATTAATA-AATATAATTGATTATATTATTATA
47447 ATATTAA-AAATATAA-T-ATTATATTATTATA
1 ATATTAATAAATATAATTGATTATATTATTATA
47477 ATATTAATAAATATA
1 ATATTAATAAATATA
47492 TTTTAAATAT
Statistics
Matches: 42, Mismatches: 2, Indels: 5
0.86 0.04 0.10
Matches are distributed among these distances:
30 20 0.48
31 8 0.19
32 7 0.17
33 1 0.02
34 6 0.14
ACGTcount: A:0.49, C:0.00, G:0.01, T:0.49
Consensus pattern (33 bp):
ATATTAATAAATATAATTGATTATATTATTATA
Found at i:47484 original size:22 final size:21
Alignment explanation
Indices: 47440--47502 Score: 65
Period size: 22 Copynumber: 2.9 Consensus size: 21
47430 TTGATTATTT
* *
47440 TATTATAATATTAAAAATATAA
1 TATTATATTATTAAATAT-TAA
47462 TATTATATTATTATAATATTAA
1 TATTATATTATTA-AATATTAA
*
47484 TAAATATATT-TTAAATATT
1 T-ATTATATTATTAAATATT
47503 TTAATAATTA
Statistics
Matches: 36, Mismatches: 3, Indels: 5
0.82 0.07 0.11
Matches are distributed among these distances:
21 6 0.17
22 19 0.53
23 11 0.31
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (21 bp):
TATTATATTATTAAATATTAA
Found at i:47515 original size:30 final size:31
Alignment explanation
Indices: 47311--47515 Score: 96
Period size: 30 Copynumber: 6.8 Consensus size: 31
47301 TCTTTATTAA
* * * *
47311 AATATTATTAGATTATTATATTAAT-ATTA-
1 AATATTATAATATTATAATATTAATAAATAT
* *
47340 AATA-TATAA-ATTATTA-ATTATTAAATAT
1 AATATTATAATATTATAATATTAATAAATAT
* * *
47368 -ATA-AAAAATTATTAT-ATATTTATTAAA-AT
1 AATATTATAA-TATTATAATA-TTAATAAATAT
* * *
47397 AAAAATATAATATCT-T-ATATTATTATAATAT
1 AATATTATAATAT-TATAATATTAATA-AATAT
**
47428 AATTGATTATTTTATTATAATATTAA-AAATAT
1 AA-T-ATTATAATATTATAATATTAATAAATAT
*
47460 AATATTATATTATTATAATATTAATAAATAT
1 AATATTATAATATTATAATATTAATAAATAT
* *
47491 -ATTTTA-AATATTTTAATAATTAATA
1 AATATTATAATATTATAAT-ATTAATA
47516 TTTTGATGAA
Statistics
Matches: 142, Mismatches: 17, Indels: 33
0.74 0.09 0.17
Matches are distributed among these distances:
26 5 0.04
27 16 0.11
28 5 0.04
29 27 0.19
30 51 0.36
31 15 0.11
32 8 0.06
33 9 0.06
34 6 0.04
ACGTcount: A:0.50, C:0.00, G:0.01, T:0.48
Consensus pattern (31 bp):
AATATTATAATATTATAATATTAATAAATAT
Found at i:49871 original size:22 final size:23
Alignment explanation
Indices: 49846--49910 Score: 73
Period size: 23 Copynumber: 2.9 Consensus size: 23
49836 ACCAAACGAT
*
49846 TGAAAACGTGTCA-AAAGGTAGA
1 TGAAAACGTGTCATAAAGATAGA
*
49868 TG-AAACGTTTCATAAAGATAGA
1 TGAAAACGTGTCATAAAGATAGA
*
49890 -GAAAAATGTGTCATAAAGATA
1 TG-AAAACGTGTCATAAAGATA
49911 AAGTTATTAA
Statistics
Matches: 36, Mismatches: 4, Indels: 5
0.80 0.09 0.11
Matches are distributed among these distances:
21 10 0.28
22 10 0.28
23 16 0.44
ACGTcount: A:0.48, C:0.08, G:0.22, T:0.23
Consensus pattern (23 bp):
TGAAAACGTGTCATAAAGATAGA
Found at i:53673 original size:3 final size:3
Alignment explanation
Indices: 53665--53697 Score: 66
Period size: 3 Copynumber: 11.0 Consensus size: 3
53655 CACAATGCAA
53665 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
53698 TACAATGAAT
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 30 1.00
ACGTcount: A:0.67, C:0.00, G:0.00, T:0.33
Consensus pattern (3 bp):
AAT
Found at i:53985 original size:130 final size:130
Alignment explanation
Indices: 53752--53987 Score: 341
Period size: 130 Copynumber: 1.8 Consensus size: 130
53742 TAAATCTAAT
*
53752 TCTTATTTCCCCTGCTTCTCCTTTCTGAGAATAAAATCATTCAACCATTGCTGTTTCTATGGCAC
1 TCTTATTTCCCCTGCTTCTCCTTTCTGAGAATAAAATCATTCAACCATTGCTGTTTCTATGGAAC
* *** * * *
53817 ACCTAGTGTGGAAACTCTGTTTGCCTCTAATTTGATCAGATTGTTCCAGATATAGTGAATGCAGG
66 ACATAGTCCAGAAACCCTGCTTGCCTCTAATGTGATCAGATTGTTCCAGATATAGTGAATGCAGG
* *
53882 TCTTATTTCCCCTGTTTCTCCTTTCTCG-GACTAAAATCATTCAACCATTGCTGTTTC-ATTGGA
1 TCTTATTTCCCCTGCTTCTCCTTTCT-GAGAATAAAATCATTCAACCATTGCTGTTTCTA-TGGA
*
53945 ACATATAGTCCAGAAACCCTGCTTGCCTCTAATGTGATCAGAT
64 ACACATAGTCCAGAAACCCTGCTTGCCTCTAATGTGATCAGAT
53988 CATCCCAAAT
Statistics
Matches: 93, Mismatches: 11, Indels: 4
0.86 0.10 0.04
Matches are distributed among these distances:
129 1 0.01
130 91 0.98
131 1 0.01
ACGTcount: A:0.24, C:0.24, G:0.15, T:0.37
Consensus pattern (130 bp):
TCTTATTTCCCCTGCTTCTCCTTTCTGAGAATAAAATCATTCAACCATTGCTGTTTCTATGGAAC
ACATAGTCCAGAAACCCTGCTTGCCTCTAATGTGATCAGATTGTTCCAGATATAGTGAATGCAGG
Found at i:58116 original size:21 final size:21
Alignment explanation
Indices: 58071--58124 Score: 58
Period size: 21 Copynumber: 2.6 Consensus size: 21
58061 GATAAAATTT
* *
58071 AATTAT-TTTTTAAAATATTA
1 AATTATATTTTCAAAATAATA
58091 AATTA-ATTATTCAAAATAATA
1 AATTATATT-TTCAAAATAATA
*
58112 TATTATATTTTCA
1 AATTATATTTTCA
58125 TTATATAGAC
Statistics
Matches: 28, Mismatches: 3, Indels: 5
0.78 0.08 0.14
Matches are distributed among these distances:
20 7 0.25
21 18 0.64
22 3 0.11
ACGTcount: A:0.46, C:0.04, G:0.00, T:0.50
Consensus pattern (21 bp):
AATTATATTTTCAAAATAATA
Found at i:58865 original size:2 final size:2
Alignment explanation
Indices: 58853--58891 Score: 69
Period size: 2 Copynumber: 19.0 Consensus size: 2
58843 TCTGTCCTAC
58853 AT AT CAT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT -AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
58892 TTCTCAGAAT
Statistics
Matches: 36, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 34 0.94
3 2 0.06
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:63060 original size:36 final size:36
Alignment explanation
Indices: 63013--63088 Score: 143
Period size: 36 Copynumber: 2.1 Consensus size: 36
63003 ATAATGTTCG
63013 ATTAGATAATTAAGTTTAAGTAATGCAATATATATT
1 ATTAGATAATTAAGTTTAAGTAATGCAATATATATT
*
63049 ATTAGATAATTAAGTTTATGTAATGCAATATATATT
1 ATTAGATAATTAAGTTTAAGTAATGCAATATATATT
63085 ATTA
1 ATTA
63089 AAAGAAAGTA
Statistics
Matches: 39, Mismatches: 1, Indels: 0
0.98 0.03 0.00
Matches are distributed among these distances:
36 39 1.00
ACGTcount: A:0.43, C:0.03, G:0.11, T:0.43
Consensus pattern (36 bp):
ATTAGATAATTAAGTTTAAGTAATGCAATATATATT
Found at i:67581 original size:112 final size:112
Alignment explanation
Indices: 67449--68022 Score: 961
Period size: 112 Copynumber: 5.1 Consensus size: 112
67439 TTATCGGTTT
* *
67449 GTGTCGTTACTTTATAAAAATATATTGATCCATAATAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
67514 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGCAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* *
67561 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAAGTAAAAAAATGACAAAACT
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
67626 GGTCTATAAATGACAAAACAGGTAAAGCACTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * *
67673 GTGTTGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
*
67738 GGTCTATAAATGACAAAACAGGTAAAACGCTACCGGATATATTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* * *
67785 GTGTCGATACTTTATAAAAATGTATCGATCCATAACAATATAACAGGTAAAAGAATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* *
67850 GGTCTATAAATGACAAAATAGGTAAAGCGCTACCGGATATGTTGAAA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
* *
67897 GTGTCGATACTTTATAAAAATATATTAATCTATAACAATATAACAGGT-AAAAAATGACAAAACC
1 GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
* * *
67961 GTTTTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGATA
66 GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
68008 GTGTCGATACTTTAT
1 GTGTCGATACTTTAT
68023 TATAAGTATT
Statistics
Matches: 434, Mismatches: 28, Indels: 1
0.94 0.06 0.00
Matches are distributed among these distances:
111 72 0.17
112 362 0.83
ACGTcount: A:0.45, C:0.14, G:0.15, T:0.26
Consensus pattern (112 bp):
GTGTCGATACTTTATAAAAATATATTGATCCATAACAATATAACAGGTAAAAAAATGACAAAACC
GGTCTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGAAA
Found at i:68107 original size:181 final size:187
Alignment explanation
Indices: 67894--68363 Score: 531
Period size: 202 Copynumber: 2.5 Consensus size: 187
67884 GGATATGTTG
*
67894 AAAGTGTCGATACTTTATAAAAATATATTAATCTATAACAATATAACAGGTAAAAA-ATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATTAATCTATAACAATATAACAGGTAAAAATATGACAAA
* * * * *
67958 ACCGTTTTATAAATGACAAAACAGG-T-AAA-G-C-GCTACCGGATATATTGATAGTGTCGATAC
66 ACCGGTCTAGAAATGACAAAACAGGCTCAAATGACAGCTACCAGATATATTGAAAGTGTCGATAC
* * * * *
68018 TTTATTATAAGTATTGACACTTTT-GAAATTTAAAAGAGAAGAAATTATAGCGCTAAT
131 TTTATTATAAGTATCGACACTTTTAG-AATTTAAAAGAAAAGAAATTATAACACCAAT
* *
68075 AAAGTGTCGATACTTTATAAAAATGTATTAATCCATAACAATATAACAGATAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATTAATCTATAACAATATAACAGGTAAAAATATGACAAA
* * * *
68140 ACTGGTCTCGAAATGACAAAACCGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCAGATATGT
66 ACCGGTCTAGAAATGACAAAACAGG-CTC-AAATG-----A-C-------AGCTACCAGATATAT
* *
68205 TGAAAGTGTCGATACTTTATTATAAGTATCGCCACTTTTAGAATTTAAAAGAAAAGAAGTTATAA
116 TGAAAGTGTCGATACTTTATTATAAGTATCGACACTTTTAGAATTTAAAAGAAAAGAAATTATAA
68270 CACCAAT
181 CACCAAT
* **
68277 AAAGTGTCGATGCTTTATAAAAATGTATCGATCTATAACAATATAACAGGTAAAAATATGACAAA
1 AAAGTGTCGATACTTTATAAAAATGTATTAATCTATAACAATATAACAGGTAAAAATATGACAAA
* *
68342 ATCGGTCTCGAAATGACAAAAC
66 ACCGGTCTAGAAATGACAAAAC
68364 CGGTAGTAAA
Statistics
Matches: 241, Mismatches: 26, Indels: 23
0.83 0.09 0.08
Matches are distributed among these distances:
181 53 0.22
182 27 0.11
184 1 0.00
186 3 0.01
187 1 0.00
194 1 0.00
202 154 0.64
203 1 0.00
ACGTcount: A:0.44, C:0.13, G:0.15, T:0.28
Consensus pattern (187 bp):
AAAGTGTCGATACTTTATAAAAATGTATTAATCTATAACAATATAACAGGTAAAAATATGACAAA
ACCGGTCTAGAAATGACAAAACAGGCTCAAATGACAGCTACCAGATATATTGAAAGTGTCGATAC
TTTATTATAAGTATCGACACTTTTAGAATTTAAAAGAAAAGAAATTATAACACCAAT
Found at i:68157 original size:20 final size:20
Alignment explanation
Indices: 68132--68185 Score: 99
Period size: 20 Copynumber: 2.7 Consensus size: 20
68122 AGATAAAAAT
*
68132 ATGACAAAACTGGTCTCGAA
1 ATGACAAAACCGGTCTCGAA
68152 ATGACAAAACCGGTCTCGAA
1 ATGACAAAACCGGTCTCGAA
68172 ATGACAAAACCGGT
1 ATGACAAAACCGGT
68186 AAAGAGCTAC
Statistics
Matches: 33, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 33 1.00
ACGTcount: A:0.41, C:0.22, G:0.20, T:0.17
Consensus pattern (20 bp):
ATGACAAAACCGGTCTCGAA
Found at i:68295 original size:202 final size:202
Alignment explanation
Indices: 67948--68367 Score: 619
Period size: 202 Copynumber: 2.1 Consensus size: 202
67938 AACAGGTAAA
* * * * * *
67948 AAATGACAAAACCGTTTTATAAATGACAAAACAGGTAAAGCGCTACCGGATATATTGATAGTGTC
1 AAATGACAAAACCGGTCTAGAAATGACAAAACAGGTAAAGAGCTACCAGATATATTGAAAGTGTC
* * * * *
68013 GATACTTTATTATAAGTATTGACACTTTTGAAATTTAAAAGAGAAGAAATTATAGCGCTAATAAA
66 GATACTTTATTATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAATTATAACACCAATAAA
*
68078 GTGTCGATACTTTATAAAAATGTATTAATCCATAACAATATAACAGATAAAAATATGACAAAA-C
131 GTGTCGATACTTTATAAAAATGTATCAATCCATAACAATATAACAGATAAAAATATGACAAAATC
68142 TGGTCTCG
196 -GGTCTCG
* * *
68150 AAATGACAAAACCGGTCTCGAAATGACAAAACCGGTAAAGAGCTACCAGATATGTTGAAAGTGTC
1 AAATGACAAAACCGGTCTAGAAATGACAAAACAGGTAAAGAGCTACCAGATATATTGAAAGTGTC
* *
68215 GATACTTTATTATAAGTATCGCCACTTTT-AGAATTTAAAAGAAAAGAAGTTATAACACCAATAA
66 GATACTTTATTATAAGTATCGACACTTTTGA-AATTTAAAAGAAAAGAAATTATAACACCAATAA
* * * *
68279 AGTGTCGATGCTTTATAAAAATGTATCGATCTATAACAATATAACAGGTAAAAATATGACAAAAT
130 AGTGTCGATACTTTATAAAAATGTATCAATCCATAACAATATAACAGATAAAAATATGACAAAAT
68344 CGGTCTCG
195 CGGTCTCG
68352 AAATGACAAAACCGGT
1 AAATGACAAAACCGGT
68368 AGTAAAAAAT
Statistics
Matches: 195, Mismatches: 21, Indels: 4
0.89 0.10 0.02
Matches are distributed among these distances:
201 1 0.01
202 193 0.99
203 1 0.01
ACGTcount: A:0.43, C:0.14, G:0.16, T:0.27
Consensus pattern (202 bp):
AAATGACAAAACCGGTCTAGAAATGACAAAACAGGTAAAGAGCTACCAGATATATTGAAAGTGTC
GATACTTTATTATAAGTATCGACACTTTTGAAATTTAAAAGAAAAGAAATTATAACACCAATAAA
GTGTCGATACTTTATAAAAATGTATCAATCCATAACAATATAACAGATAAAAATATGACAAAATC
GGTCTCG
Found at i:69012 original size:23 final size:23
Alignment explanation
Indices: 68983--69053 Score: 115
Period size: 23 Copynumber: 3.1 Consensus size: 23
68973 AAATATGTTA
68983 ATATAAGCGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
*
69006 ATATAAGAGCTACCTATTACATT
1 ATATAAGCGCTACCTATTACATT
* *
69029 ATATAAGCGCTACCTAATATATT
1 ATATAAGCGCTACCTATTACATT
69052 AT
1 AT
69054 TGTACTTAAT
Statistics
Matches: 44, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 44 1.00
ACGTcount: A:0.38, C:0.18, G:0.08, T:0.35
Consensus pattern (23 bp):
ATATAAGCGCTACCTATTACATT
Found at i:73341 original size:29 final size:29
Alignment explanation
Indices: 73256--73364 Score: 177
Period size: 29 Copynumber: 3.8 Consensus size: 29
73246 TTTTATATGT
73256 TCATGTA-CTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
* *
73284 TCATGTAGTTCAT-TCATTTCTCTTATGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
73312 TCATGTAGCTCATGTCATTTCTCTTGTGA
1 TCATGTAGCTCATGTCATTTCTCTTGTGA
73341 TCATGTAGCTCATGTCATGTTCTC
1 TCATGTAGCTCATGTCAT-TTCTC
73365 ATATACATAT
Statistics
Matches: 74, Mismatches: 4, Indels: 4
0.90 0.05 0.05
Matches are distributed among these distances:
28 33 0.45
29 36 0.49
30 5 0.07
ACGTcount: A:0.18, C:0.21, G:0.15, T:0.46
Consensus pattern (29 bp):
TCATGTAGCTCATGTCATTTCTCTTGTGA
Found at i:73343 original size:57 final size:58
Alignment explanation
Indices: 73251--73364 Score: 187
Period size: 57 Copynumber: 2.0 Consensus size: 58
73241 CTATATTTTA
* *
73251 TATGTTCATGTACTCATGTCATTTCTCTTGTGATCATGTAGTTCAT-TCAT-TTCTCT
1 TATGATCATGTACTCATGTCATTTCTCTTGTGATCATGTAGCTCATGTCATGTTCTCT
73307 TATGATCATGTAGCTCATGTCATTTCTCTTGTGATCATGTAGCTCATGTCATGTTCTC
1 TATGATCATGTA-CTCATGTCATTTCTCTTGTGATCATGTAGCTCATGTCATGTTCTC
73365 ATATACATAT
Statistics
Matches: 53, Mismatches: 2, Indels: 3
0.91 0.03 0.05
Matches are distributed among these distances:
56 11 0.21
57 33 0.62
58 4 0.08
59 5 0.09
ACGTcount: A:0.18, C:0.20, G:0.15, T:0.46
Consensus pattern (58 bp):
TATGATCATGTACTCATGTCATTTCTCTTGTGATCATGTAGCTCATGTCATGTTCTCT
Done.