Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007160.1 Hibiscus syriacus cultivar Beakdansim tig00018749_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61495

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7112--7142
16
1.9
16
93
0
53
61
0
3
35
1.12
7922--7960
19
2.1
19
90
4
62
69
5
5
20
1.28
9006--9041
16
2.3
15
90
9
63
16
16
58
8
1.61
9128--9166
9
3.8
10
84
15
53
41
0
2
56
1.13
9162--9231
3
23.7
3
85
8
99
62
0
1
35
1.04
11386--11444
32
1.9
30
89
6
91
33
5
3
57
1.37
11377--11405
2
15.0
2
92
7
51
51
0
0
48
1.00
14815--14857
22
2.0
22
90
4
70
32
0
0
67
0.91
18238--18279
21
2.0
22
90
4
68
14
26
23
35
1.93
18289--18319
16
1.9
16
93
0
53
48
12
12
25
1.77
18364--18409
18
2.4
18
82
7
56
30
13
17
39
1.87
19624--19665
21
2.0
21
95
0
75
47
7
14
30
1.71
21962--22001
12
3.1
12
80
19
53
20
17
15
47
1.83
21961--22000
15
2.9
14
85
14
57
20
17
15
47
1.83
23241--23286
20
2.3
19
85
10
65
56
10
15
17
1.67
23408--23454
20
2.4
19
82
10
67
53
10
17
19
1.72
23417--23459
20
2.3
19
88
11
63
51
11
16
20
1.75
32383--32484
44
2.3
44
80
8
111
35
17
22
24
1.95
32499--32624
43
3.2
43
61
23
112
21
16
24
37
1.94
32495--32689
75
2.6
75
93
0
318
24
18
21
35
1.95
32642--32733
43
2.1
43
81
0
103
29
16
21
32
1.95
33115--33211
21
4.6
21
89
0
140
5
41
9
44
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
33115--33217
10
10.0
10
68
23
63
4
40
9
44
1.59
45073--45397
55
5.9
55
87
2
440
28
19
17
34
1.95
45073--45401
165
2.0
164
88
2
491
28
19
17
34
1.95
45275--45520
125
2.0
125
86
0
348
28
17
18
35
1.94
50184--50241
27
2.1
27
90
6
91
18
17
18
44
1.87
50841--50885
20
2.2
20
96
0
81
35
31
4
28
1.77
53784--53836
27
2.0
25
85
7
70
33
13
18
33
1.90
54304--54388
24
3.5
24
79
3
82
20
11
15
52
1.73

Tables:   1

The End!