Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007161.1 Hibiscus syriacus cultivar Beakdansim tig00018764_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  63879

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9170--9449
116
2.4
118
93
3
494
33
4
9
52
1.55
10819--10903
37
2.3
37
86
6
120
42
20
4
32
1.72
20150--20180
6
5.0
6
96
4
53
0
64
0
35
0.94
23535--23573
21
1.9
19
85
10
51
53
5
0
41
1.23
28460--28551
39
2.6
38
78
21
96
42
2
2
53
1.25
28474--28563
39
2.4
40
83
12
111
43
2
1
53
1.20
28535--28585
22
2.3
22
83
10
59
47
1
0
50
1.12
28592--28636
22
2.0
22
83
8
56
46
6
0
46
1.29
29418--29561
43
3.4
42
81
9
125
50
5
17
27
1.68
33188--33225
19
2.0
20
85
15
53
5
34
0
60
1.19
33689--33731
21
2.0
21
86
0
59
30
27
25
16
1.97
34431--34475
23
2.0
23
86
0
63
20
26
26
26
1.99
40021--40058
19
2.0
20
85
15
53
5
34
0
60
1.19
40511--40553
21
2.0
21
86
0
59
30
27
25
16
1.97
51023--51202
67
2.8
64
76
9
175
31
21
20
27
1.98
51511--51547
12
3.1
12
92
0
65
35
2
24
37
1.70
51561--51634
29
2.6
29
97
2
141
43
16
21
18
1.88
51718--51780
15
4.2
15
93
0
108
14
22
33
30
1.93
51718--51780
30
2.1
30
100
0
126
14
22
33
30
1.93
52207--52243
17
2.1
18
85
14
51
24
0
29
45
1.53
52788--52872
38
2.2
38
85
0
116
24
27
20
28
1.99
53020--53112
46
2.1
44
87
4
132
35
18
5
40
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55405--55438
3
11.3
3
87
0
50
67
2
0
29
1.05
61938--61998
29
2.1
30
87
3
88
9
16
18
55
1.67
63294--63328
16
2.3
15
90
5
52
40
2
0
57
1.14

Tables:   1

The End!