Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007162.1 Hibiscus syriacus cultivar Beakdansim tig00018772_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 96733
ACGTcount: A:0.34, C:0.17, G:0.16, T:0.34
Found at i:479 original size:17 final size:17
Alignment explanation
Indices: 459--508 Score: 73
Period size: 17 Copynumber: 2.9 Consensus size: 17
449 TTTAGGGAAG
459 TAGTTCATTAATTAAAC
1 TAGTTCATTAATTAAAC
* *
476 TAGTTCATTCATCAAAC
1 TAGTTCATTAATTAAAC
*
493 TAGTTCATTTATTAAA
1 TAGTTCATTAATTAAA
509 TTAACTCTTA
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
17 29 1.00
ACGTcount: A:0.38, C:0.14, G:0.06, T:0.42
Consensus pattern (17 bp):
TAGTTCATTAATTAAAC
Found at i:3770 original size:22 final size:23
Alignment explanation
Indices: 3734--3776 Score: 70
Period size: 22 Copynumber: 1.9 Consensus size: 23
3724 ACATGGTATC
*
3734 AGATTTTTTAGCTCGATTTTGGG
1 AGATTTTTCAGCTCGATTTTGGG
3757 AGATTTTTCA-CTCGATTTTG
1 AGATTTTTCAGCTCGATTTTG
3777 TTAGCAGTCC
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
22 10 0.53
23 9 0.47
ACGTcount: A:0.19, C:0.12, G:0.21, T:0.49
Consensus pattern (23 bp):
AGATTTTTCAGCTCGATTTTGGG
Found at i:6558 original size:20 final size:20
Alignment explanation
Indices: 6529--6566 Score: 67
Period size: 20 Copynumber: 1.9 Consensus size: 20
6519 TTTCAAAAGA
6529 ATGCACCGATGCACCAATCT
1 ATGCACCGATGCACCAATCT
*
6549 ATGCATCGATGCACCAAT
1 ATGCACCGATGCACCAAT
6567 GAATAAATTA
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
20 17 1.00
ACGTcount: A:0.32, C:0.32, G:0.16, T:0.21
Consensus pattern (20 bp):
ATGCACCGATGCACCAATCT
Found at i:6687 original size:65 final size:63
Alignment explanation
Indices: 6529--6737 Score: 174
Period size: 65 Copynumber: 3.2 Consensus size: 63
6519 TTTCAAAAGA
* * * **
6529 ATGCACCGATGCACCAATCTATGCATCGATGCAC-CAATGAATAAATT-AAACATCGAATGCAGT
1 ATGCATCGATGCA-CAATCTATGCATCGATACACTCAA-G-CTATTTTGAAACATCGAATGCA-T
*
6592 TC
62 TG
* ** * * *
6594 ATGTATCGATGCACTCTCTATGCATCGATACACT-TAGGTTTTTATGAAAACATCGAATGCATTT
1 ATGCATCGATGCACAATCTATGCATCGATACACTCAAGCTATTT-TG-AAACATCGAATGCA-TT
6658 G
63 G
* * *
6659 ATGCATCGATGCACAATAC-ATGCCTCGATGCACTCAAGCTATTTTGAAACATCGAATGTATTG
1 ATGCATCGATGCACAAT-CTATGCATCGATACACTCAAGCTATTTTGAAACATCGAATGCATTG
6722 TATGCATCGATGCACA
1 -ATGCATCGATGCACA
6738 CTTAGTGCAC
Statistics
Matches: 116, Mismatches: 21, Indels: 15
0.76 0.14 0.10
Matches are distributed among these distances:
62 2 0.02
63 5 0.04
64 46 0.40
65 56 0.48
66 7 0.06
ACGTcount: A:0.33, C:0.22, G:0.17, T:0.29
Consensus pattern (63 bp):
ATGCATCGATGCACAATCTATGCATCGATACACTCAAGCTATTTTGAAACATCGAATGCATTG
Found at i:15058 original size:18 final size:18
Alignment explanation
Indices: 15035--15070 Score: 63
Period size: 18 Copynumber: 2.0 Consensus size: 18
15025 AATAAATTGA
15035 ACATCGAATGCAATTCAT
1 ACATCGAATGCAATTCAT
*
15053 ACATCGATTGCAATTCAT
1 ACATCGAATGCAATTCAT
15071 GCAACGATGC
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
18 17 1.00
ACGTcount: A:0.36, C:0.22, G:0.11, T:0.31
Consensus pattern (18 bp):
ACATCGAATGCAATTCAT
Found at i:15078 original size:18 final size:18
Alignment explanation
Indices: 15043--15078 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
15033 GAACATCGAA
*
15043 TGCAATTCATACATCGAT
1 TGCAATTCATACAACGAT
*
15061 TGCAATTCATGCAACGAT
1 TGCAATTCATACAACGAT
15079 GCACTCTCCA
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
18 16 1.00
ACGTcount: A:0.33, C:0.22, G:0.14, T:0.31
Consensus pattern (18 bp):
TGCAATTCATACAACGAT
Found at i:15231 original size:64 final size:65
Alignment explanation
Indices: 15053--15212 Score: 191
Period size: 65 Copynumber: 2.5 Consensus size: 65
15043 TGCAATTCAT
* * * * ** * *
15053 ACATCGATTGCAATTCATGCAACGATGCACTCTCCATGCATCGATGCACTCAGGTTTTTATGAAA
1 ACATCGAATGCATTTGATGCATCGATGCACAATACATGCATCGATGCACTCAGGTATTTATGAAA
* *
15118 ACATTGAATGCATTTGATGTATCGATGCACAATACATGCATCGATGCACTCAGGCTATTT-TG-A
1 ACATCGAATGCATTTGATGCATCGATGCACAATACATGCATCGATGCACTCAGG-TATTTATGAA
15181 A
65 A
15182 ACATCGAATGCA-TTGTATGCATCGATGCACA
1 ACATCGAATGCATTTG-ATGCATCGATGCACA
15213 CTTAGTTCAC
Statistics
Matches: 81, Mismatches: 12, Indels: 5
0.83 0.12 0.05
Matches are distributed among these distances:
63 3 0.04
64 27 0.33
65 47 0.58
66 4 0.05
ACGTcount: A:0.31, C:0.22, G:0.18, T:0.29
Consensus pattern (65 bp):
ACATCGAATGCATTTGATGCATCGATGCACAATACATGCATCGATGCACTCAGGTATTTATGAAA
Found at i:23919 original size:23 final size:23
Alignment explanation
Indices: 23881--23940 Score: 75
Period size: 23 Copynumber: 2.6 Consensus size: 23
23871 ATCAAGTAAA
* * *
23881 ATAATAAATTACGTAGCGTTTAT
1 ATAATAAAATAGGTAGCGCTTAT
**
23904 ATAATGTAATAGGTAGCGCTTAT
1 ATAATAAAATAGGTAGCGCTTAT
23927 ATAATAAAATAGGT
1 ATAATAAAATAGGT
23941 TAATTACTGA
Statistics
Matches: 30, Mismatches: 7, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
23 30 1.00
ACGTcount: A:0.42, C:0.07, G:0.17, T:0.35
Consensus pattern (23 bp):
ATAATAAAATAGGTAGCGCTTAT
Found at i:23994 original size:23 final size:23
Alignment explanation
Indices: 23968--24027 Score: 66
Period size: 23 Copynumber: 2.6 Consensus size: 23
23958 ATCAAGCATA
* *
23968 ATAACATATTAGGTAGCGTTTAT
1 ATAACATAATAGGTAGCGCTTAT
**
23991 ATAATGTAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAGCGCTTAT
* *
24014 ATAATAAAATAGGT
1 ATAACATAATAGGT
24028 TAATTACTGG
Statistics
Matches: 31, Mismatches: 6, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 31 1.00
ACGTcount: A:0.40, C:0.07, G:0.18, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAGCGCTTAT
Found at i:23999 original size:87 final size:87
Alignment explanation
Indices: 23868--24102 Score: 362
Period size: 87 Copynumber: 2.7 Consensus size: 87
23858 AATCGGAAAT
* * * *
23868 ATTATCAAGTAAAATAATAAATTACGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATA
1 ATTATCAAGCAAAATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATA
23933 AAATAGGTTAATTACTGAAAAC
66 AAATAGGTTAATTACTGAAAAC
*
23955 ATTATCAAGCATAATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATA
1 ATTATCAAGCAAAATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATA
* *
24020 AAATAGGTTAATTACTGGAAAT
66 AAATAGGTTAATTACTGAAAAC
* * * * *
24042 ATTATTAAGCACAATAACATACTAGGTAACGTTTATATAATATAATAGGTAGCGCTTATAT
1 ATTATCAAGCAAAATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATAT
24103 TGATCTATTC
Statistics
Matches: 136, Mismatches: 12, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
87 136 1.00
ACGTcount: A:0.43, C:0.09, G:0.14, T:0.34
Consensus pattern (87 bp):
ATTATCAAGCAAAATAACATATTAGGTAGCGTTTATATAATGTAATAGGTAGCGCTTATATAATA
AAATAGGTTAATTACTGAAAAC
Found at i:24090 original size:23 final size:23
Alignment explanation
Indices: 24055--24102 Score: 60
Period size: 23 Copynumber: 2.1 Consensus size: 23
24045 ATTAAGCACA
* *
24055 ATAACATACTAGGTAACGTTTAT
1 ATAACATAATAGGTAACGCTTAT
* *
24078 ATAATATAATAGGTAGCGCTTAT
1 ATAACATAATAGGTAACGCTTAT
24101 AT
1 AT
24103 TGATCTATTC
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.40, C:0.10, G:0.15, T:0.35
Consensus pattern (23 bp):
ATAACATAATAGGTAACGCTTAT
Found at i:24729 original size:200 final size:199
Alignment explanation
Indices: 24108--24783 Score: 893
Period size: 198 Copynumber: 3.4 Consensus size: 199
24098 TATATTGATC
*
24108 TATTCTATCATAAAA-CAGATATATTTATACCGGTAACATTGCAAATTTACCTATTACATTATAA
1 TATTCTCTCATAAAACCAGATATATTTATACCGGT-ACATTGCAAATTTACCTATTACATTATAA
* * * *
24172 TTATCGGTTTCGATGTTTTTGGGATCGATACAATTT--TAAATGTATCGACACTTTATGCGTGCT
65 TTATCGGTTTCGATATTTTTGGGATCGATAC-TTTTAATAAATGTATCGACACTTTATGTGTGCA
* * *
24235 CCTCGTTGGACATTCATTCTGGAAAAAAGTATTGACACAAACTTAAAACGTGTAGATACATTATG
129 CCTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATG
24300 TAGACT
194 TAGACT
* * * * * ** * *
24306 TATTTTTTCAT-AAACCCGGTATATTTCTACCGGGTACATTATAAATTTACCTAATACATTGTAA
1 TATTCTCTCATAAAACCAGATATATTTATACC-GGTACATTGCAAATTTACCTATTACATTATAA
* * * *
24370 TTATCGGTTTCTAT-TTTTTGGGATAGATACTTTTAATAAATTTATCGACACTTTATGTATGCAC
65 TTATCGGTTTCGATATTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCAC
*
24434 CTCGTTGGATATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGT
130 CTCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGT
*
24499 AGACA
195 AGACT
* * *
24504 TATTTTCTCATAAAACC-GATATATTTCTACCGAGTACATTGCAAATTTACCTATTACATTGTAA
1 TATTCTCTCATAAAACCAGATATATTTATACCG-GTACATTGCAAATTTACCTATTACATTATAA
*
24568 TTATCGGTTTCAATATTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCAC
65 TTATCGGTTTCGATATTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCAC
* *** *
24633 CTCGTTTGG-CATTCATTCTGGACAAAATGTATCGACAC-TTTTTAAATTTGTGTCGATACATTA
130 CTCG-TTGGACATTCATTCTGGA-AAAAAGTATCGACACAAACTTAAA-ATGTGTCGATACATTA
24696 TGTAGACT
192 TGTAGACT
** * *
24704 TATTCTCTCATAAAACCAG-TATATTTATATTGGTTACATTGTAAATTTACCTATTATATTATAA
1 TATTCTCTCATAAAACCAGATATATTTATACCGG-TACATTGCAAATTTACCTATTACATTATAA
24768 TTATCGGTTTCGATAT
65 TTATCGGTTTCGATAT
24784 AACATATGTG
Statistics
Matches: 421, Mismatches: 45, Indels: 22
0.86 0.09 0.05
Matches are distributed among these distances:
196 3 0.01
197 19 0.05
198 213 0.51
199 77 0.18
200 108 0.26
201 1 0.00
ACGTcount: A:0.32, C:0.15, G:0.13, T:0.39
Consensus pattern (199 bp):
TATTCTCTCATAAAACCAGATATATTTATACCGGTACATTGCAAATTTACCTATTACATTATAAT
TATCGGTTTCGATATTTTTGGGATCGATACTTTTAATAAATGTATCGACACTTTATGTGTGCACC
TCGTTGGACATTCATTCTGGAAAAAAGTATCGACACAAACTTAAAATGTGTCGATACATTATGTA
GACT
Found at i:24890 original size:39 final size:39
Alignment explanation
Indices: 24842--24933 Score: 98
Period size: 39 Copynumber: 2.3 Consensus size: 39
24832 TTATTCTCTC
* * *
24842 AATATAATATAATTAATGATATATTATTCTTATTATAATA-
1 AATA-AATATAATTAATAATATATTATT-TTAATAAAATAT
* *
24882 AATAAATATAATTTATAATATTTTATTTTAATAAAATAT
1 AATAAATATAATTAATAATATATTATTTTAATAAAATAT
24921 AAT-AATCATAATT
1 AATAAAT-ATAATT
24934 TTTTATTTAT
Statistics
Matches: 45, Mismatches: 5, Indels: 5
0.82 0.09 0.09
Matches are distributed among these distances:
38 12 0.27
39 29 0.64
40 4 0.09
ACGTcount: A:0.50, C:0.02, G:0.01, T:0.47
Consensus pattern (39 bp):
AATAAATATAATTAATAATATATTATTTTAATAAAATAT
Found at i:24965 original size:28 final size:31
Alignment explanation
Indices: 24885--24966 Score: 93
Period size: 30 Copynumber: 2.7 Consensus size: 31
24875 TATAATAAAT
*
24885 AAATATAAT-TTATAATATTTTATTTTAATA
1 AAATATAATAATATAATATTTTATTTTAATA
*
24915 AAATATAATAATCATAATTTTTTA-TTT-ATA
1 AAATATAATAAT-ATAATATTTTATTTTAATA
24945 AAAT-T-ATAGATATAATATTTTA
1 AAATATAATA-ATATAATATTTTA
24967 ATAATAATAT
Statistics
Matches: 46, Mismatches: 3, Indels: 8
0.81 0.05 0.14
Matches are distributed among these distances:
28 13 0.28
29 3 0.07
30 16 0.35
31 4 0.09
32 10 0.22
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (31 bp):
AAATATAATAATATAATATTTTATTTTAATA
Found at i:24973 original size:14 final size:14
Alignment explanation
Indices: 24905--24977 Score: 51
Period size: 14 Copynumber: 5.3 Consensus size: 14
24895 TATAATATTT
24905 TATTTTAATAA-AA
1 TATTTTAATAATAA
** *
24918 TATAATAATCATAA
1 TATTTTAATAATAA
* * *
24932 TTTTTTATTTATAA
1 TATTTTAATAATAA
* *
24946 AATTATAGAT-ATAA
1 TATTTTA-ATAATAA
24960 TATTTTAATAATAA
1 TATTTTAATAATAA
24974 TATT
1 TATT
24978 GACATAAATA
Statistics
Matches: 43, Mismatches: 14, Indels: 5
0.69 0.23 0.08
Matches are distributed among these distances:
13 10 0.23
14 32 0.74
15 1 0.02
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.49
Consensus pattern (14 bp):
TATTTTAATAATAA
Found at i:24973 original size:28 final size:28
Alignment explanation
Indices: 24905--24973 Score: 70
Period size: 28 Copynumber: 2.5 Consensus size: 28
24895 TATAATATTT
*
24905 TATTTTAATAA-AATATAATAATCATAA
1 TATTTTAATAATAAAATAATAATCATAA
* * * *
24932 TTTTTTATTTATAAAATTATAGAT-ATAA
1 TATTTTAATAATAAAATAATA-ATCATAA
24960 TATTTTAATAATAA
1 TATTTTAATAATAA
24974 TATTGACATA
Statistics
Matches: 32, Mismatches: 8, Indels: 3
0.74 0.19 0.07
Matches are distributed among these distances:
27 8 0.25
28 22 0.69
29 2 0.06
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (28 bp):
TATTTTAATAATAAAATAATAATCATAA
Found at i:25688 original size:31 final size:30
Alignment explanation
Indices: 25647--25728 Score: 80
Period size: 30 Copynumber: 2.7 Consensus size: 30
25637 TTATAAAAAA
*
25647 TAAT-AAATATAATTTATAATAATTTTATT-T
1 TAATAAAATATAA-TAATAATAATTTT-TTAT
*
25677 TAATAAAATATAATAATCATAATTTTTTAT
1 TAATAAAATATAATAATAATAATTTTTTAT
*
25707 TTATAAAATTATAGAT-ATAATA
1 TAATAAAA-TATA-ATAATAATA
25729 TTTACATAAA
Statistics
Matches: 44, Mismatches: 4, Indels: 7
0.80 0.07 0.13
Matches are distributed among these distances:
29 2 0.05
30 23 0.52
31 17 0.39
32 2 0.05
ACGTcount: A:0.50, C:0.01, G:0.01, T:0.48
Consensus pattern (30 bp):
TAATAAAATATAATAATAATAATTTTTTAT
Found at i:25699 original size:30 final size:31
Alignment explanation
Indices: 25647--25715 Score: 81
Period size: 30 Copynumber: 2.3 Consensus size: 31
25637 TTATAAAAAA
*
25647 TAAT-AAATATAATTTATAATAATTTTATT-T
1 TAATAAAATATAATTAATAATAATTTT-TTAT
*
25677 TAATAAAATATAA-TAATCATAATTTTTTAT
1 TAATAAAATATAATTAATAATAATTTTTTAT
*
25707 TTATAAAAT
1 TAATAAAAT
25716 TATAGATATA
Statistics
Matches: 34, Mismatches: 3, Indels: 4
0.83 0.07 0.10
Matches are distributed among these distances:
29 2 0.06
30 24 0.71
31 8 0.24
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (31 bp):
TAATAAAATATAATTAATAATAATTTTTTAT
Found at i:25813 original size:24 final size:24
Alignment explanation
Indices: 25762--25813 Score: 65
Period size: 24 Copynumber: 2.2 Consensus size: 24
25752 ATTATTCTAA
25762 TATT-TTAAAAATAATATTATTAT
1 TATTGTTAAAAATAATATTATTAT
*
25785 T-TTGTTAATAAATAATATTGTT-T
1 TATTGTTAA-AAATAATATTATTAT
25808 TATTGT
1 TATTGT
25814 ATTTGATGTT
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
22 2 0.08
23 7 0.28
24 16 0.64
ACGTcount: A:0.38, C:0.00, G:0.06, T:0.56
Consensus pattern (24 bp):
TATTGTTAAAAATAATATTATTAT
Found at i:26202 original size:23 final size:23
Alignment explanation
Indices: 26152--26196 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
26142 AGCTTATTTT
*
26152 ATTATATAAGCGCTAACTATTAC
1 ATTATATAAGCGCTAACTAATAC
* *
26175 ATTATATAAGCGGTACCTAATA
1 ATTATATAAGCGCTAACTAATA
26197 TGTTATTGTG
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.40, C:0.16, G:0.11, T:0.33
Consensus pattern (23 bp):
ATTATATAAGCGCTAACTAATAC
Found at i:26252 original size:87 final size:86
Alignment explanation
Indices: 26049--26280 Score: 347
Period size: 87 Copynumber: 2.7 Consensus size: 86
26039 TAATAAATTA
* *
26049 AATAATTAACCTATTTTATTATATAAGCGCTATCTATTACGTTATATAAGTGCTACCTAATATGT
1 AATAATTAACCTATTTTATTATATAAGCGCTAACTATTACATTATATAAGTGCTACCTAATATGT
** *
26114 TTTGTGCTTGATAATGTTTTC
66 TTTGTGCTTGATAATACTTCC
* * * * *
26135 AGTAATTAGCTTATTTTATTATATAAGCGCTAACTATTACATTATATAAGCGGTACCTAATATGT
1 AATAATTAACCTATTTTATTATATAAGCGCTAACTATTACATTATATAAGTGCTACCTAATATGT
*
26200 TATTGTGTTTGATAATACTTCC
66 T-TTGTGCTTGATAATACTTCC
*
26222 AATAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGTGCTACCTA
1 AATAATTAACCTATTTTATTATATAAGCGCTAACTATTACATTATATAAGTGCTACCTA
26281 TTACATTATA
Statistics
Matches: 128, Mismatches: 17, Indels: 1
0.88 0.12 0.01
Matches are distributed among these distances:
86 59 0.46
87 69 0.54
ACGTcount: A:0.33, C:0.14, G:0.11, T:0.43
Consensus pattern (86 bp):
AATAATTAACCTATTTTATTATATAAGCGCTAACTATTACATTATATAAGTGCTACCTAATATGT
TTTGTGCTTGATAATACTTCC
Found at i:26332 original size:156 final size:156
Alignment explanation
Indices: 26152--26447 Score: 493
Period size: 156 Copynumber: 1.9 Consensus size: 156
26142 AGCTTATTTT
* * *
26152 ATTATATAAGCGCTAACTATTACATTATATAAGCGGTACCTAATATGTTATTGTGTTTGATAATA
1 ATTATATAAGCGCCAACTATTACATTATATAAGCGATACCTAATATGTTATTGTGCTTGATAATA
*
26217 CTTCCAATAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGTGCTACCTAT
66 CTTCCAATAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAT
*
26282 TACATTATATAAGTGCTACCTATTAC
131 TACATCATATAAGTGCTACCTATTAC
* * *
26308 ATTATATAAGCGCCACCTATTACATTATATAAGTGATACCTAATATGTTATTGTGCTTGATAATG
1 ATTATATAAGCGCCAACTATTACATTATATAAGCGATACCTAATATGTTATTGTGCTTGATAATA
* * *
26373 TTTCCAGTAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTATCTAT
66 CTTCCAATAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAT
26438 TACATCATAT
131 TACATCATAT
26448 TTTTACTTGT
Statistics
Matches: 129, Mismatches: 11, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
156 129 1.00
ACGTcount: A:0.34, C:0.16, G:0.10, T:0.40
Consensus pattern (156 bp):
ATTATATAAGCGCCAACTATTACATTATATAAGCGATACCTAATATGTTATTGTGCTTGATAATA
CTTCCAATAATTAACCTATTTTATTATATAAGCGCTACCTATTACATTATATAAGCGCTACCTAT
TACATCATATAAGTGCTACCTATTAC
Found at i:26358 original size:23 final size:23
Alignment explanation
Indices: 26230--26349 Score: 186
Period size: 23 Copynumber: 5.2 Consensus size: 23
26220 CCAATAATTA
** *
26230 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGTGCT
26253 ACCTATTACATTATATAAGTGCT
1 ACCTATTACATTATATAAGTGCT
26276 ACCTATTACATTATATAAGTGCT
1 ACCTATTACATTATATAAGTGCT
* *
26299 ACCTATTACATTATATAAGCGCC
1 ACCTATTACATTATATAAGTGCT
*
26322 ACCTATTACATTATATAAGTGAT
1 ACCTATTACATTATATAAGTGCT
26345 ACCTA
1 ACCTA
26350 ATATGTTATT
Statistics
Matches: 89, Mismatches: 8, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
23 89 1.00
ACGTcount: A:0.35, C:0.19, G:0.08, T:0.38
Consensus pattern (23 bp):
ACCTATTACATTATATAAGTGCT
Found at i:26421 original size:23 final size:23
Alignment explanation
Indices: 26386--26447 Score: 88
Period size: 23 Copynumber: 2.7 Consensus size: 23
26376 CCAGTAATTA
**
26386 ACCTATTTTATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
26409 ACCTATTACATTATATAAGCGCT
1 ACCTATTACATTATATAAGCGCT
* *
26432 ATCTATTACATCATAT
1 ACCTATTACATTATAT
26448 TTTTACTTGT
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
23 35 1.00
ACGTcount: A:0.34, C:0.19, G:0.06, T:0.40
Consensus pattern (23 bp):
ACCTATTACATTATATAAGCGCT
Found at i:27905 original size:22 final size:23
Alignment explanation
Indices: 27859--27905 Score: 60
Period size: 22 Copynumber: 2.1 Consensus size: 23
27849 ATGTTCATTT
*
27859 TACATAACTTAGAAAGAAAAAAA
1 TACATAACTTACAAAGAAAAAAA
* *
27882 TACATAAC-TACAAATATAAAAA
1 TACATAACTTACAAAGAAAAAAA
27904 TA
1 TA
27906 ATATATCTTA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 13 0.62
23 8 0.38
ACGTcount: A:0.64, C:0.11, G:0.04, T:0.21
Consensus pattern (23 bp):
TACATAACTTACAAAGAAAAAAA
Found at i:32550 original size:19 final size:19
Alignment explanation
Indices: 32526--32576 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
32516 AGACTTAGTG
32526 CATCGGTACACTAGGGGTA
1 CATCGGTACACTAGGGGTA
*
32545 CATCGGTACATTAGGGGTA
1 CATCGGTACACTAGGGGTA
32564 CATCGGTACACTA
1 CATCGGTACACTA
32577 ATTACATTCG
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
19 30 1.00
ACGTcount: A:0.27, C:0.22, G:0.27, T:0.24
Consensus pattern (19 bp):
CATCGGTACACTAGGGGTA
Found at i:35464 original size:22 final size:22
Alignment explanation
Indices: 35434--35512 Score: 65
Period size: 22 Copynumber: 3.6 Consensus size: 22
35424 TGCATAGTGT
*
35434 ATCGATGCAATTCAAGGAATGC
1 ATCGATGCAATTCAAGGAATTC
* * *
35456 ATCGGTGCACTTCATA-G--TTT
1 ATCGATGCAATTCA-AGGAATTC
35476 ATCGATGCATATTCAAGGAATTC
1 ATCGATGCA-ATTCAAGGAATTC
* *
35499 ATCGGTGCACTTCA
1 ATCGATGCAATTCA
35513 TAATGTATCG
Statistics
Matches: 43, Mismatches: 9, Indels: 10
0.69 0.15 0.16
Matches are distributed among these distances:
20 10 0.23
21 5 0.12
22 17 0.40
23 11 0.26
ACGTcount: A:0.29, C:0.20, G:0.20, T:0.30
Consensus pattern (22 bp):
ATCGATGCAATTCAAGGAATTC
Found at i:35504 original size:43 final size:43
Alignment explanation
Indices: 35414--35528 Score: 178
Period size: 43 Copynumber: 2.7 Consensus size: 43
35404 CGACGAGTGT
* *
35414 ATCGATGCACTGCATAGTGTATCGATGCA-ATTCAAGGAATGC
1 ATCGGTGCACTTCATAGTGTATCGATGCATATTCAAGGAATGC
* *
35456 ATCGGTGCACTTCATAGTTTATCGATGCATATTCAAGGAATTC
1 ATCGGTGCACTTCATAGTGTATCGATGCATATTCAAGGAATGC
*
35499 ATCGGTGCACTTCATAATGTATCGATGCAT
1 ATCGGTGCACTTCATAGTGTATCGATGCAT
35529 GTTGCACAAA
Statistics
Matches: 66, Mismatches: 6, Indels: 1
0.90 0.08 0.01
Matches are distributed among these distances:
42 26 0.39
43 40 0.61
ACGTcount: A:0.29, C:0.19, G:0.21, T:0.31
Consensus pattern (43 bp):
ATCGGTGCACTTCATAGTGTATCGATGCATATTCAAGGAATGC
Found at i:35527 original size:20 final size:20
Alignment explanation
Indices: 35411--35527 Score: 74
Period size: 20 Copynumber: 5.6 Consensus size: 20
35401 ACCCGACGAG
* *
35411 TGTATCGATGCACTGCATAG
1 TGTATCGATGCACTTCATAA
* *
35431 TGTATCGATGCAATTCAAGGAA
1 TGTATCGATGCACTTC-A-TAA
* * *
35453 TGCATCGGTGCACTTCATAG
1 TGTATCGATGCACTTCATAA
* * *
35473 TTTATCGATGCATATTCAAGGAA
1 TGTATCGATGCA-CTTC-A-TAA
*
35496 T-TCATCGGTGCACTTCATAA
1 TGT-ATCGATGCACTTCATAA
35516 TGTATCGATGCA
1 TGTATCGATGCA
35528 TGTTGCACAA
Statistics
Matches: 71, Mismatches: 19, Indels: 14
0.68 0.18 0.13
Matches are distributed among these distances:
20 35 0.49
21 7 0.10
22 19 0.27
23 10 0.14
ACGTcount: A:0.28, C:0.19, G:0.21, T:0.32
Consensus pattern (20 bp):
TGTATCGATGCACTTCATAA
Found at i:41316 original size:19 final size:19
Alignment explanation
Indices: 41292--41342 Score: 93
Period size: 19 Copynumber: 2.7 Consensus size: 19
41282 AGACTTATTG
*
41292 CATCGGTAAACTAGGGGTA
1 CATCGGTACACTAGGGGTA
41311 CATCGGTACACTAGGGGTA
1 CATCGGTACACTAGGGGTA
41330 CATCGGTACACTA
1 CATCGGTACACTA
41343 ATTACATTTG
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
19 31 1.00
ACGTcount: A:0.29, C:0.22, G:0.27, T:0.22
Consensus pattern (19 bp):
CATCGGTACACTAGGGGTA
Found at i:47072 original size:31 final size:31
Alignment explanation
Indices: 46996--47059 Score: 112
Period size: 31 Copynumber: 2.1 Consensus size: 31
46986 AGTTACGTCG
46996 GGGACCATATTGCAAACGGACTAAATGTTGA
1 GGGACCATATTGCAAACGGACTAAATGTTGA
*
47027 GGGACCACATTGCAAACGGACTAAATGTT-A
1 GGGACCATATTGCAAACGGACTAAATGTTGA
47057 GGG
1 GGG
47060 GATTATATTG
Statistics
Matches: 32, Mismatches: 1, Indels: 1
0.94 0.03 0.03
Matches are distributed among these distances:
30 4 0.12
31 28 0.88
ACGTcount: A:0.34, C:0.17, G:0.28, T:0.20
Consensus pattern (31 bp):
GGGACCATATTGCAAACGGACTAAATGTTGA
Found at i:49155 original size:31 final size:31
Alignment explanation
Indices: 49096--49160 Score: 85
Period size: 31 Copynumber: 2.1 Consensus size: 31
49086 TACAATATAA
* *
49096 TCCCCCAATATTTAGTTCATTTGCAATATGG
1 TCCCCCAACATTTAGTCCATTTGCAATATGG
* * *
49127 TCCCTCAACATTTAGTCCGTTTGTAATATGG
1 TCCCCCAACATTTAGTCCATTTGCAATATGG
49158 TCC
1 TCC
49161 TTGACGTAAC
Statistics
Matches: 29, Mismatches: 5, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
31 29 1.00
ACGTcount: A:0.23, C:0.25, G:0.14, T:0.38
Consensus pattern (31 bp):
TCCCCCAACATTTAGTCCATTTGCAATATGG
Found at i:71222 original size:22 final size:22
Alignment explanation
Indices: 71194--71237 Score: 88
Period size: 22 Copynumber: 2.0 Consensus size: 22
71184 TACGAACTAT
71194 TTCCGGTCGTTCCAAAATCGCG
1 TTCCGGTCGTTCCAAAATCGCG
71216 TTCCGGTCGTTCCAAAATCGCG
1 TTCCGGTCGTTCCAAAATCGCG
71238 ATTCAGTACG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.18, C:0.32, G:0.23, T:0.27
Consensus pattern (22 bp):
TTCCGGTCGTTCCAAAATCGCG
Found at i:73605 original size:117 final size:117
Alignment explanation
Indices: 73456--73683 Score: 379
Period size: 117 Copynumber: 1.9 Consensus size: 117
73446 CTTATAAATA
73456 GGTTCATCAATTAAAAAACATGAAGAAGAATTCAAATTCAGTTTCTATAGTAATTCTAAAAAGAA
1 GGTTCATCAATTAAAAAACATGAAGAAGAATTCAAATTCAGTTTCTATAGTAATTCTAAAAAGAA
* *
73521 TAGCACTAGTTATATAGCATTGCTAAAAGTGAATAAA-GACAATATTTAAACG
66 TAACACAAGTTATATAGCATTGCTAAAAGTGAATAAAGGA-AATATTTAAACG
* *
73573 GGTTCATCAATTAAAAAAATATGAA-AATAATTCAAATTCAGTTTCTATAGTAATTCTAAAAAGA
1 GGTTCATCAATT-AAAAAACATGAAGAAGAATTCAAATTCAGTTTCTATAGTAATTCTAAAAAGA
*
73637 ATAACACAAGTTATATAGCATTGCTAGAAGTGAATAAAGGAAATATT
65 ATAACACAAGTTATATAGCATTGCTAAAAGTGAATAAAGGAAATATT
73684 GAATGATAAG
Statistics
Matches: 104, Mismatches: 5, Indels: 4
0.92 0.04 0.04
Matches are distributed among these distances:
117 91 0.88
118 13 0.12
ACGTcount: A:0.47, C:0.10, G:0.13, T:0.30
Consensus pattern (117 bp):
GGTTCATCAATTAAAAAACATGAAGAAGAATTCAAATTCAGTTTCTATAGTAATTCTAAAAAGAA
TAACACAAGTTATATAGCATTGCTAAAAGTGAATAAAGGAAATATTTAAACG
Found at i:75849 original size:31 final size:29
Alignment explanation
Indices: 75813--75879 Score: 71
Period size: 30 Copynumber: 2.2 Consensus size: 29
75803 TTACTCATTA
* *
75813 AACTTTACTCTTTTTCCTATTTCACTCACTG
1 AACTTTAAT-TTTTTCC-AATTCACTCACTG
* *
75844 TACTTTTAATTTTTTTCAATTCACTCACTG
1 AAC-TTTAATTTTTTCCAATTCACTCACTG
75874 AACTTT
1 AACTTT
75880 GACATTGTTC
Statistics
Matches: 30, Mismatches: 5, Indels: 4
0.77 0.13 0.10
Matches are distributed among these distances:
29 3 0.10
30 14 0.47
31 8 0.27
32 5 0.17
ACGTcount: A:0.22, C:0.24, G:0.03, T:0.51
Consensus pattern (29 bp):
AACTTTAATTTTTTCCAATTCACTCACTG
Found at i:77883 original size:3 final size:3
Alignment explanation
Indices: 77875--77910 Score: 56
Period size: 3 Copynumber: 12.0 Consensus size: 3
77865 TATCCCGATC
77875 TTA TTA TTA TTA TTA TTA TTA TTA -TA TATA TTA TTA
1 TTA TTA TTA TTA TTA TTA TTA TTA TTA T-TA TTA TTA
77911 AATATTTTTA
Statistics
Matches: 31, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
2 2 0.06
3 26 0.84
4 3 0.10
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (3 bp):
TTA
Found at i:78141 original size:16 final size:16
Alignment explanation
Indices: 78120--78179 Score: 102
Period size: 16 Copynumber: 3.8 Consensus size: 16
78110 TCTTCAACAA
*
78120 GAAACCTTAGGGTTAT
1 GAAACCCTAGGGTTAT
78136 GAAACCCTAGGGTTAT
1 GAAACCCTAGGGTTAT
78152 GAAACCCTAGGGTTAT
1 GAAACCCTAGGGTTAT
*
78168 GATACCCTAGGG
1 GAAACCCTAGGG
78180 ACCATGCGGC
Statistics
Matches: 42, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
16 42 1.00
ACGTcount: A:0.30, C:0.18, G:0.27, T:0.25
Consensus pattern (16 bp):
GAAACCCTAGGGTTAT
Found at i:79262 original size:32 final size:32
Alignment explanation
Indices: 79221--79287 Score: 134
Period size: 32 Copynumber: 2.1 Consensus size: 32
79211 CTAATATAAT
79221 TTTTATTATTATCCTTTAAATTTTAATTATTA
1 TTTTATTATTATCCTTTAAATTTTAATTATTA
79253 TTTTATTATTATCCTTTAAATTTTAATTATTA
1 TTTTATTATTATCCTTTAAATTTTAATTATTA
79285 TTT
1 TTT
79288 AATTTTAGTC
Statistics
Matches: 35, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
32 35 1.00
ACGTcount: A:0.30, C:0.06, G:0.00, T:0.64
Consensus pattern (32 bp):
TTTTATTATTATCCTTTAAATTTTAATTATTA
Found at i:80791 original size:23 final size:23
Alignment explanation
Indices: 80714--80780 Score: 107
Period size: 23 Copynumber: 2.9 Consensus size: 23
80704 ACTGAAGTGA
* *
80714 CACATAGAAATGTCCCGAAAGAC
1 CACATAGAATTGTCCCGAAGGAC
*
80737 CACATAGTATTGTCCCGAAGGAC
1 CACATAGAATTGTCCCGAAGGAC
80760 CACATAGAATTGTCCCGAAGG
1 CACATAGAATTGTCCCGAAGG
80781 GCCGCGTAGA
Statistics
Matches: 40, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
23 40 1.00
ACGTcount: A:0.36, C:0.25, G:0.21, T:0.18
Consensus pattern (23 bp):
CACATAGAATTGTCCCGAAGGAC
Found at i:81514 original size:20 final size:20
Alignment explanation
Indices: 81489--81539 Score: 93
Period size: 20 Copynumber: 2.5 Consensus size: 20
81479 TCGCAAAATG
*
81489 GTATCGATACTTATACATTA
1 GTATCGATACCTATACATTA
81509 GTATCGATACCTATACATTA
1 GTATCGATACCTATACATTA
81529 GTATCGATACC
1 GTATCGATACC
81540 CTTCCTTTGG
Statistics
Matches: 30, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
20 30 1.00
ACGTcount: A:0.33, C:0.20, G:0.12, T:0.35
Consensus pattern (20 bp):
GTATCGATACCTATACATTA
Found at i:83613 original size:20 final size:20
Alignment explanation
Indices: 83590--83689 Score: 62
Period size: 21 Copynumber: 4.8 Consensus size: 20
83580 AATACCAAGC
83590 CTTCTGTATGGATACCCAA-T
1 CTTCTGTATGGATA-CCAATT
*
83610 CTTCAT-TATGAATACCAATT
1 CTTC-TGTATGGATACCAATT
* * **
83630 CATCTGGTATGGATATCGGTT
1 CTTCT-GTATGGATACCAATT
* *
83651 CATCTGATATGGATACCAGTT
1 CTTCTG-TATGGATACCAATT
83672 -TATCTGATATGGATACCA
1 CT-TCTG-TATGGATACCA
83690 TTTTATCCAG
Statistics
Matches: 65, Mismatches: 9, Indels: 11
0.76 0.11 0.13
Matches are distributed among these distances:
19 5 0.08
20 16 0.25
21 44 0.68
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (20 bp):
CTTCTGTATGGATACCAATT
Found at i:83652 original size:21 final size:21
Alignment explanation
Indices: 83616--83711 Score: 95
Period size: 21 Copynumber: 4.6 Consensus size: 21
83606 CAATCTTCAT
* * *
83616 TATGAATACCAATTCATCTGG
1 TATGGATACCAGTTCATCTGA
* *
83637 TATGGATATCGGTTCATCTGA
1 TATGGATACCAGTTCATCTGA
*
83658 TATGGATACCAGTTTATCTGA
1 TATGGATACCAGTTCATCTGA
* * *
83679 TATGGATACCATTTTATC-CA
1 TATGGATACCAGTTCATCTGA
83699 GTATGGATACCAG
1 -TATGGATACCAG
83712 CCCACCAGTA
Statistics
Matches: 63, Mismatches: 11, Indels: 2
0.83 0.14 0.03
Matches are distributed among these distances:
20 1 0.02
21 62 0.98
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.35
Consensus pattern (21 bp):
TATGGATACCAGTTCATCTGA
Found at i:86357 original size:23 final size:23
Alignment explanation
Indices: 86330--86379 Score: 91
Period size: 23 Copynumber: 2.2 Consensus size: 23
86320 CATGTTTGTA
86330 CATTCTATATGGCACTACATGTG
1 CATTCTATATGGCACTACATGTG
*
86353 CATTCTATATGGCACTATATGTG
1 CATTCTATATGGCACTACATGTG
86376 CATT
1 CATT
86380 ATGGGTTTCA
Statistics
Matches: 26, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
23 26 1.00
ACGTcount: A:0.26, C:0.20, G:0.16, T:0.38
Consensus pattern (23 bp):
CATTCTATATGGCACTACATGTG
Found at i:90950 original size:31 final size:32
Alignment explanation
Indices: 90914--90977 Score: 103
Period size: 31 Copynumber: 2.0 Consensus size: 32
90904 CAAGTTTATC
90914 ACTTACTCTCCAATGTT-GTTTAGAACTATAA
1 ACTTACTCTCCAATGTTAGTTTAGAACTATAA
* *
90945 ACTTACTCTCCAATGTTATTTTAGAACTTTAA
1 ACTTACTCTCCAATGTTAGTTTAGAACTATAA
90977 A
1 A
90978 GTTGAATTAT
Statistics
Matches: 30, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
31 17 0.57
32 13 0.43
ACGTcount: A:0.33, C:0.19, G:0.08, T:0.41
Consensus pattern (32 bp):
ACTTACTCTCCAATGTTAGTTTAGAACTATAA
Found at i:91947 original size:39 final size:38
Alignment explanation
Indices: 91883--91982 Score: 119
Period size: 39 Copynumber: 2.6 Consensus size: 38
91873 ATTAGGAACC
* * *
91883 AGATTTCAAGTTGGGAATCAAATTTCAGGTTGGAAACT
1 AGATTTTAGGTTGGAAATCAAATTTCAGGTTGGAAACT
* *
91921 AGTTTTATAGGTTGGAAATCATATTTCAGGTTGGAAACT
1 AGATTT-TAGGTTGGAAATCAAATTTCAGGTTGGAAACT
* * *
91960 GGATTTTAGGTTGGGAATTAAAT
1 AGATTTTAGGTTGGAAATCAAAT
91983 CTTTAAGGGT
Statistics
Matches: 51, Mismatches: 10, Indels: 2
0.81 0.16 0.03
Matches are distributed among these distances:
38 19 0.37
39 32 0.63
ACGTcount: A:0.32, C:0.07, G:0.25, T:0.36
Consensus pattern (38 bp):
AGATTTTAGGTTGGAAATCAAATTTCAGGTTGGAAACT
Found at i:91953 original size:19 final size:19
Alignment explanation
Indices: 91885--91957 Score: 69
Period size: 19 Copynumber: 3.8 Consensus size: 19
91875 TAGGAACCAG
* * *
91885 ATTTCAAGTTGGGAATCAA
1 ATTTCAGGTTGGAAATCAT
91904 ATTTCAGGTTGGAAA-C-T
1 ATTTCAGGTTGGAAATCAT
*
91921 AGTTTTATAGGTTGGAAATCAT
1 A--TTT-CAGGTTGGAAATCAT
91943 ATTTCAGGTTGGAAA
1 ATTTCAGGTTGGAAA
91958 CTGGATTTTA
Statistics
Matches: 44, Mismatches: 5, Indels: 10
0.75 0.08 0.17
Matches are distributed among these distances:
17 1 0.02
18 1 0.02
19 26 0.59
20 13 0.30
21 1 0.02
22 2 0.05
ACGTcount: A:0.33, C:0.08, G:0.23, T:0.36
Consensus pattern (19 bp):
ATTTCAGGTTGGAAATCAT
Found at i:91965 original size:19 final size:18
Alignment explanation
Indices: 91904--91973 Score: 61
Period size: 19 Copynumber: 3.7 Consensus size: 18
91894 TGGGAATCAA
91904 ATTTCAGGTTGGAAACTAG
1 ATTTCAGGTTGGAAACT-G
* *
91923 TTTTATAGGTTGGAAATCAT-
1 ATTT-CAGGTTGGAAA-C-TG
91943 ATTTCAGGTTGGAAACTGG
1 ATTTCAGGTTGGAAACT-G
*
91962 ATTTTAGGTTGG
1 ATTTCAGGTTGG
91974 GAATTAAATC
Statistics
Matches: 41, Mismatches: 5, Indels: 10
0.73 0.09 0.18
Matches are distributed among these distances:
17 1 0.02
18 1 0.02
19 24 0.59
20 13 0.32
21 1 0.02
22 1 0.02
ACGTcount: A:0.27, C:0.07, G:0.27, T:0.39
Consensus pattern (18 bp):
ATTTCAGGTTGGAAACTG
Done.