genome.fa.s7163.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007163.1 Hibiscus syriacus cultivar Beakdansim tig00018773_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  90269

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4554--4602	24	2.0	24	92	7	82	53	2	4	40	1.32
7725--7934	34	6.2	34	94	1	368	26	25	18	29	1.98
8418--8555	59	2.4	57	77	7	143	28	18	17	35	1.93
8750--8893	59	2.4	60	78	9	143	36	15	15	31	1.90
10955--10990	18	2.0	18	100	0	72	55	5	11	27	1.57
12612--15453	315	9.0	316	94	0	4646	17	25	17	40	1.91
16793--16817	2	12.5	2	100	0	50	48	0	0	52	1.00
16815--16872	4	14.5	4	100	0	116	25	0	24	50	1.50
18803--19682	444	2.0	439	89	2	1352	36	11	13	37	1.82
23483--23580	47	2.1	48	90	1	153	48	12	10	28	1.73
23602--23635	17	2.0	17	100	0	68	41	0	0	58	0.98
23602--23639	17	2.5	15	87	12	51	44	0	0	55	0.99
23597--23639	17	2.9	14	78	18	50	48	0	0	51	1.00
26028--26073	19	2.3	20	88	3	67	50	10	2	36	1.50
31438--31512	30	2.5	30	95	2	132	45	9	14	30	1.77
41046--41070	3	8.3	3	100	0	50	68	32	0	0	0.90
41497--41539	14	3.2	14	84	15	56	46	0	2	51	1.13
41490--41541	23	2.3	22	81	12	61	44	0	1	53	1.11
53569--53611	14	3.2	14	84	15	56	46	0	2	51	1.13
53562--53613	23	2.3	22	81	12	61	44	0	1	53	1.11
61816--61859	19	2.6	16	80	16	52	29	4	18	47	1.68
63839--64314	258	1.9	243	88	6	709	27	13	18	40	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64666--64711	18	2.6	17	80	6	56	28	26	2	43	1.66
65886--65940	19	2.9	19	73	10	58	43	0	0	56	0.99
66030--66072	14	3.2	14	84	15	56	46	0	2	51	1.13
66023--66074	23	2.3	22	81	12	61	44	0	1	53	1.11
72533--72574	16	2.6	17	81	11	52	38	0	0	61	0.96
72585--72627	18	2.5	19	82	17	58	55	0	6	37	1.27
78031--78071	20	2.0	20	90	9	66	43	4	14	36	1.67
79903--79960	18	3.2	18	66	9	55	51	6	0	41	1.28
79904--79976	36	2.0	36	100	0	146	50	8	0	41	1.32
83562--83604	20	2.2	20	100	0	86	60	6	13	18	1.55
85946--86073	60	2.1	60	84	2	168	38	15	13	32	1.86

Tables:   1

The End!