genome.fa.s7165.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007165.1 Hibiscus syriacus cultivar Beakdansim tig00018776_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79645

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3006--3064	31	1.9	31	92	0	100	16	11	16	54	1.71
4429--4497	31	2.2	31	81	0	84	53	20	11	14	1.71
20454--20614	81	2.0	81	97	0	304	40	11	22	25	1.87
25769--25805	18	2.1	18	89	0	56	67	0	13	18	1.23
26457--26504	20	2.2	21	85	14	62	60	12	8	18	1.57
33381--33454	23	3.1	23	69	17	62	52	25	10	10	1.68
39724--39773	20	2.5	20	100	0	100	38	26	18	18	1.93
39767--39813	20	2.3	21	88	3	69	46	23	12	17	1.82
39968--40018	22	2.3	22	93	0	84	19	43	15	21	1.88
40384--40437	20	2.8	20	88	2	83	12	16	22	48	1.80
42169--42218	21	2.4	21	80	6	57	22	12	36	30	1.90
42530--42593	21	3.0	21	77	9	76	20	29	20	29	1.97
43915--44063	64	2.3	64	88	0	217	29	2	15	52	1.56
44164--44218	20	2.8	20	88	0	83	38	20	21	20	1.94
44216--44245	14	2.1	14	100	0	60	13	20	20	46	1.83
44487--44521	6	5.8	6	86	0	52	17	2	20	60	1.49
44480--44520	18	2.3	18	95	0	73	17	2	24	56	1.53
44728--44767	16	2.5	16	83	0	53	67	0	5	27	1.11
44945--45077	20	6.6	20	71	10	83	32	12	24	31	1.91
44947--45064	41	2.9	41	78	5	116	33	13	23	28	1.93
46068--46135	22	3.0	22	97	2	127	26	27	26	19	1.99
46345--46407	30	2.1	30	88	5	92	36	22	6	34	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46429--46500	29	2.5	29	90	0	108	40	12	9	37	1.76
46803--46955	68	2.3	67	86	4	209	17	27	27	27	1.98
53020--53087	22	3.0	22	95	2	118	27	27	25	19	1.98
53297--53359	30	2.1	30	88	5	92	36	22	6	34	1.80
53381--53452	29	2.5	29	90	0	108	40	12	9	37	1.76
53755--53905	68	2.2	67	87	3	214	17	27	27	27	1.98
56175--56221	18	2.7	18	90	3	69	34	8	29	27	1.87
57576--57671	49	2.0	48	95	2	174	39	17	10	32	1.84
59093--59184	47	1.9	48	81	14	111	63	0	7	29	1.22
62227--62679	54	8.4	53	87	2	627	31	19	18	30	1.96
62227--62679	108	4.2	108	89	1	692	31	19	18	30	1.96
62227--62748	162	3.3	161	86	2	691	31	19	17	31	1.95
68019--68092	6	12.5	6	91	7	100	68	10	16	4	1.33

Tables:   1

The End!