genome.fa.s7168.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007168.1 Hibiscus syriacus cultivar Beakdansim tig00018798_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  78637

Tables:   1   

This is table  1  of  1  ( 46 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5836--6192	41	8.7	41	78	4	288	30	19	16	33	1.94
5968--6119	40	3.7	40	76	8	128	27	17	16	38	1.91
12690--12727	14	2.7	14	80	11	51	23	10	26	39	1.87
13752--13795	3	14.3	3	81	13	54	34	2	0	63	1.07
15050--15108	30	2.0	30	89	0	91	15	13	15	55	1.69
15056--15120	30	2.2	30	83	5	78	20	13	12	53	1.71
18895--19227	167	2.0	167	98	0	648	27	16	25	29	1.97
26970--27005	10	3.6	10	84	0	54	50	11	0	38	1.38
26966--26996	16	1.9	16	93	0	53	51	12	0	35	1.40
29055--29118	27	2.4	27	100	0	128	48	15	9	26	1.75
31338--31366	15	1.9	15	100	0	58	20	10	13	55	1.68
33272--33308	18	2.1	18	100	0	74	37	18	5	37	1.74
33743--33767	13	1.9	13	100	0	50	0	40	0	60	0.97
34275--34350	20	3.7	20	75	14	73	30	19	26	23	1.98
35878--35950	18	3.9	18	80	7	83	21	20	28	28	1.98
39081--39105	13	1.9	13	100	0	50	0	40	0	60	0.97
41276--41348	18	3.9	18	82	7	101	20	21	30	27	1.98
41275--41349	38	2.0	38	91	0	123	21	22	29	26	1.99
43633--43690	17	3.3	18	76	9	57	48	1	1	48	1.22
44488--44531	24	1.9	22	81	9	52	38	0	2	59	1.10
44510--44575	32	2.1	32	83	10	84	43	0	0	56	0.99
44513--44575	15	4.1	15	74	9	56	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44558--44604	25	1.9	24	87	12	69	36	0	0	63	0.94
44588--44624	18	1.9	18	89	10	56	21	0	8	70	1.13
52718--52772	18	3.1	17	76	7	56	27	0	5	67	1.12
53255--53330	36	2.1	35	83	13	93	5	23	17	53	1.63
55528--55589	3	21.3	3	78	18	60	29	3	0	67	1.06
60451--60483	16	2.1	16	94	0	57	27	18	0	54	1.44
60876--61436	84	6.7	83	77	6	483	31	23	19	25	1.98
61086--61416	164	2.0	164	86	0	455	31	24	19	24	1.98
60878--61436	250	2.2	248	86	1	769	31	23	19	25	1.98
64068--64164	31	3.1	31	86	0	131	27	27	9	35	1.88
66262--66311	2	25.0	2	95	0	91	48	0	2	50	1.12
66416--66491	38	2.0	38	97	0	143	26	25	10	38	1.88
66583--66618	16	2.2	16	100	0	72	27	5	30	36	1.80
70676--70797	45	2.6	45	82	12	151	29	23	18	28	1.97
70767--70815	19	2.6	19	84	9	57	24	30	18	26	1.98
72007--72063	29	2.0	27	83	12	71	50	0	1	47	1.11
72021--72291	149	1.8	144	85	6	375	47	7	6	38	1.58
72052--72329	149	1.9	147	81	5	337	47	7	6	38	1.59
73721--73773	3	19.0	3	79	14	51	64	1	0	33	1.05
73699--73777	22	3.8	21	76	17	67	60	1	0	37	1.05
73721--73783	22	2.8	22	82	2	72	66	3	0	30	1.07
74037--74690	113	5.8	113	87	4	962	27	20	13	38	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74038--74697	227	2.9	226	93	2	1089	28	19	13	38	1.90
76214--76259	20	2.3	20	100	0	92	8	17	0	73	1.07

Tables:   1

The End!