genome.fa.s7170.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007170.1 Hibiscus syriacus cultivar Beakdansim tig00018807_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75130

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7201--7246	20	2.2	21	85	11	60	32	2	0	65	1.05
7204--7246	21	2.0	21	86	8	61	32	2	0	65	1.06
9489--9518	13	2.3	13	100	0	60	50	6	6	36	1.55
15315--15396	19	4.6	19	78	18	95	46	4	3	45	1.42
15315--15388	32	2.3	32	92	2	121	45	5	4	44	1.45
15313--15405	19	4.8	19	78	15	61	46	4	3	46	1.38
20199--20267	33	2.1	33	97	0	129	39	2	10	47	1.52
21311--21358	23	2.1	23	88	0	69	35	12	18	33	1.89
21734--21787	23	2.5	20	75	18	54	42	18	1	37	1.61
21749--21811	23	2.7	23	90	0	90	38	19	6	36	1.77
22127--22165	20	2.0	20	89	0	60	48	10	15	25	1.76
21470--22338	429	2.0	429	99	0	1722	38	13	8	39	1.74
22163--22216	23	2.5	20	75	18	54	42	18	1	37	1.61
22178--22240	23	2.7	23	90	0	90	38	19	6	36	1.77
24797--25336	184	2.9	184	98	0	1030	34	15	15	34	1.89
26328--26380	24	2.2	24	83	6	63	26	7	13	52	1.66
26525--26571	20	2.4	19	79	10	58	19	17	8	55	1.67
26687--26736	20	2.5	20	81	12	75	22	16	10	52	1.73
26802--27249	228	2.0	227	94	1	781	39	7	8	45	1.61
37293--37344	16	3.2	17	78	7	56	67	3	1	26	1.18
37324--37348	5	5.0	5	100	0	50	80	0	0	20	0.72
43296--43352	27	2.1	27	96	0	105	47	1	10	40	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44071--44106	15	2.5	15	86	4	56	41	0	0	58	0.98
44614--44674	27	2.2	28	85	8	90	40	19	11	27	1.86
59975--60010	18	2.1	17	89	5	54	2	27	0	69	1.02

Tables:   1

The End!