genome.fa.s7172.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007172.1 Hibiscus syriacus cultivar Beakdansim tig00018823_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  164432

Tables:   1   

This is table  1  of  1  ( 112 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10596--12181	812	2.0	812	94	0	2769	35	18	16	29	1.93
12227--12379	29	5.4	28	81	4	155	47	16	3	32	1.62
12227--12379	57	2.7	57	82	4	175	47	16	3	32	1.62
16553--16585	13	2.4	14	90	5	50	24	0	30	45	1.53
23686--23726	17	2.4	18	80	12	50	43	0	0	56	0.99
25317--25929	306	2.0	306	99	0	1208	33	19	17	29	1.95
27168--27218	19	2.8	18	75	16	59	58	0	25	15	1.37
27237--27269	15	2.3	15	89	5	50	66	6	21	6	1.35
31793--31850	2	29.0	2	100	0	116	50	0	0	50	1.00
31872--31920	19	2.7	18	77	20	57	57	0	24	18	1.41
31940--31971	13	2.3	15	89	10	50	65	6	21	6	1.38
32417--32464	24	2.0	23	96	4	87	47	35	16	0	1.47
32432--32471	19	2.0	20	95	4	73	45	37	15	2	1.59
32630--32675	20	2.3	20	80	0	56	28	19	28	23	1.98
34592--34623	15	2.1	15	94	0	55	34	9	9	46	1.68
41096--41249	30	5.0	30	80	7	130	40	3	0	55	1.16
41149--41203	27	2.0	27	82	0	65	49	0	0	50	1.00
41171--41219	25	1.9	26	87	4	73	40	2	0	57	1.10
41105--41238	31	4.3	32	78	9	123	41	2	0	55	1.15
41171--41243	25	2.7	26	74	22	69	39	1	0	58	1.06
41442--41479	18	2.1	18	100	0	76	63	10	5	21	1.46
42058--42109	25	2.1	25	88	0	77	46	9	1	42	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42636--42683	21	2.2	21	85	3	60	64	4	4	27	1.30
42626--42691	22	3.0	22	76	12	73	62	4	3	30	1.30
42719--42764	17	2.6	18	86	6	58	32	0	0	67	0.91
43775--44069	132	2.2	132	81	4	344	22	19	29	29	1.98
43824--44121	132	2.3	132	79	5	316	22	19	28	29	1.98
48908--48962	8	7.0	8	74	12	51	63	0	0	36	0.95
48912--48971	14	4.5	14	70	19	56	63	0	1	35	1.05
48914--48972	19	3.2	17	74	21	55	61	0	1	37	1.07
48862--48957	25	3.9	25	72	13	83	58	1	0	40	1.05
49026--49073	19	2.5	19	76	13	53	50	0	0	50	1.00
49060--49116	29	2.0	29	82	6	71	52	7	1	38	1.39
51933--52035	31	3.4	31	70	20	90	27	17	3	51	1.63
53762--53826	27	2.4	26	80	12	78	50	3	1	44	1.26
53775--53820	20	2.2	21	84	7	58	50	2	0	47	1.13
54225--54262	20	1.9	20	88	0	58	31	31	15	21	1.94
54282--54372	46	2.0	46	93	2	157	27	26	19	26	1.99
56230--56387	21	7.8	20	72	7	86	38	25	17	18	1.92
56354--56547	20	9.6	20	81	5	221	35	25	19	19	1.95
56354--56547	60	3.2	60	83	0	253	35	25	19	19	1.95
56694--56747	22	2.5	22	78	3	65	24	40	14	20	1.90
56925--56993	32	2.2	32	91	0	111	11	21	20	46	1.82
56925--56974	18	3.0	18	69	22	54	12	22	22	44	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57076--57181	21	5.6	20	72	16	91	45	17	24	12	1.83
57089--57185	20	5.2	20	72	18	100	46	17	24	11	1.81
57069--57185	41	3.1	38	80	14	136	46	16	25	11	1.81
57136--57192	14	3.7	14	75	20	60	43	22	24	8	1.81
57128--57196	33	2.1	33	100	0	138	46	20	24	8	1.79
57203--57300	19	5.7	19	70	22	90	10	23	22	43	1.83
57225--57314	14	5.7	14	72	23	72	8	24	23	43	1.82
57208--57322	33	3.5	33	97	0	221	9	23	20	46	1.80
57647--57744	19	5.4	19	84	13	143	45	17	22	14	1.84
57647--57762	53	2.2	53	98	1	225	43	18	24	13	1.86
57769--57921	33	4.5	33	74	16	159	15	22	16	45	1.84
57791--58007	19	12.4	19	74	19	222	15	21	16	46	1.83
57769--57979	52	4.0	52	96	0	386	15	23	15	45	1.84
57810--58021	33	6.2	33	75	14	207	14	22	16	46	1.84
60291--60315	12	2.1	12	100	0	50	0	28	0	72	0.86
60487--60533	24	2.0	24	87	8	69	38	21	14	25	1.92
61209--61438	20	11.5	20	84	3	221	20	18	24	36	1.94
61425--61507	21	4.0	21	70	6	69	26	16	22	33	1.96
61405--61503	42	2.4	43	76	8	98	23	17	22	37	1.94
64618--64676	29	2.0	29	100	0	118	47	16	20	15	1.83
68509--68547	20	2.0	20	89	0	60	30	33	15	20	1.94
68567--68657	46	2.0	46	93	2	157	27	26	19	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
71441--71534	29	3.2	29	93	3	152	32	3	34	29	1.74
72660--72706	15	3.1	15	84	0	58	10	63	14	10	1.51
72668--72710	15	2.9	15	85	0	59	13	65	11	9	1.48
79696--79730	18	1.9	18	94	0	61	25	31	22	20	1.98
84445--84484	15	2.7	15	100	0	80	35	12	7	45	1.70
89523--89556	16	2.1	16	100	0	68	17	23	14	44	1.86
91455--91512	29	2.0	30	86	3	82	43	10	3	43	1.55
98579--99558	6	164.5	6	82	4	818	55	0	44	0	1.02
98579--99558	9	109.7	9	83	4	818	55	0	44	0	1.02
100265--100442	64	2.8	64	88	5	245	28	18	19	34	1.95
100225--100445	64	3.5	64	86	3	241	28	18	19	33	1.95
103605--103667	31	2.0	31	87	6	92	38	23	19	19	1.93
104329--104549	64	3.5	62	85	8	266	28	18	19	33	1.95
105459--105492	9	3.9	9	88	7	52	76	0	23	0	0.79
105570--105640	30	2.3	29	79	13	72	38	12	12	36	1.82
105586--105656	30	2.3	30	80	7	81	40	9	15	33	1.80
111603--111685	33	2.5	33	96	0	148	38	1	1	59	1.13
116617--116670	2	27.0	2	100	0	108	50	0	0	50	1.00
117026--117065	19	2.1	19	100	0	80	52	15	5	27	1.63
121307--121345	2	19.5	2	94	0	69	53	0	0	46	1.00
121596--121664	18	3.7	18	76	14	68	30	33	20	15	1.94
121591--121667	38	2.0	38	89	0	118	29	29	20	19	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
122236--122380	64	2.3	64	83	4	177	27	19	21	31	1.97
128356--128415	18	3.0	20	78	11	79	26	30	21	21	1.99
128984--129130	65	2.3	66	81	7	158	27	18	20	34	1.96
133230--133262	17	1.9	17	93	0	57	27	0	3	69	1.03
133225--133287	17	3.6	17	77	10	56	28	1	1	68	1.08
133336--133385	22	2.2	24	85	7	68	28	0	2	70	0.99
133368--133423	25	2.3	24	82	8	69	42	0	3	53	1.18
133798--133841	23	1.9	23	86	9	63	65	0	2	31	1.05
140108--140233	61	2.1	61	93	0	216	31	15	17	35	1.91
143588--143642	28	2.0	28	92	0	92	29	14	21	34	1.93
146807--146888	33	2.5	33	89	0	137	39	20	13	26	1.90
149287--149369	20	4.1	20	87	9	123	14	27	38	19	1.90
149287--149369	41	2.0	40	88	6	123	14	27	38	19	1.90
149811--149856	21	2.1	22	84	4	58	21	28	19	30	1.98
152468--152546	33	2.4	33	84	0	104	43	17	10	29	1.82
159202--159242	21	2.0	21	85	4	57	34	7	24	34	1.83
160517--160542	10	2.6	10	100	0	52	61	0	0	38	0.96
160805--160943	64	2.2	64	81	2	154	29	17	25	26	1.98
161628--161693	13	5.3	13	70	14	50	42	1	6	50	1.36
162530--162570	21	2.0	21	85	9	57	14	34	31	19	1.92
162972--163179	7	31.5	6	66	28	54	42	6	18	32	1.75
162972--163036	18	3.3	18	69	29	51	44	6	16	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
162972--163210	46	5.3	46	95	2	416	42	6	18	32	1.76
163388--163431	17	2.6	17	92	0	70	18	22	31	27	1.97

Tables:   1

The End!