Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007173.1 Hibiscus syriacus cultivar Beakdansim tig00018827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1357898
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 1 of 9
Found at i:4426 original size:21 final size:22
Alignment explanation
Indices: 4384--4464 Score: 65
Period size: 23 Copynumber: 3.6 Consensus size: 22
4374 CCGAAGTGCA
4384 ACATAGAATGTCCCAAAAGACC
1 ACATAGAATGTCCCAAAAGACC
* * *
4406 ACATA-AATGTCTCGAAGGACC
1 ACATAGAATGTCCCAAAAGACC
* * * *
4427 GCGTAGAAATATCCCAAAGGACC
1 ACATAG-AATGTCCCAAAAGACC
*
4450 ACGTAGAATTGTCCC
1 ACATAGAA-TGTCCC
4465 GAAGGACCGC
Statistics
Matches: 46, Mismatches: 10, Indels: 5
0.75 0.16 0.08
Matches are distributed among these distances:
21 16 0.35
22 7 0.15
23 23 0.50
ACGTcount: A:0.38, C:0.26, G:0.19, T:0.17
Consensus pattern (22 bp):
ACATAGAATGTCCCAAAAGACC
Found at i:4446 original size:23 final size:23
Alignment explanation
Indices: 4420--4480 Score: 86
Period size: 23 Copynumber: 2.7 Consensus size: 23
4410 AAATGTCTCG
4420 AAGGACCGCGTAGAAATATCCCA
1 AAGGACCGCGTAGAAATATCCCA
* * * *
4443 AAGGACCACGTAGAATTGTCCCG
1 AAGGACCGCGTAGAAATATCCCA
4466 AAGGACCGCGTAGAA
1 AAGGACCGCGTAGAA
4481 CATGACTCTT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
23 33 1.00
ACGTcount: A:0.36, C:0.25, G:0.26, T:0.13
Consensus pattern (23 bp):
AAGGACCGCGTAGAAATATCCCA
Found at i:4450 original size:44 final size:46
Alignment explanation
Indices: 4394--4480 Score: 133
Period size: 46 Copynumber: 1.9 Consensus size: 46
4384 ACATAGAATG
*
4394 TCCCAAAAGACCACATA-AA-TGTCTCGAAGGACCGCGTAGAAATA
1 TCCCAAAAGACCACATAGAATTGTCCCGAAGGACCGCGTAGAAATA
* *
4438 TCCCAAAGGACCACGTAGAATTGTCCCGAAGGACCGCGTAGAA
1 TCCCAAAAGACCACATAGAATTGTCCCGAAGGACCGCGTAGAA
4481 CATGACTCTT
Statistics
Matches: 38, Mismatches: 3, Indels: 2
0.88 0.07 0.05
Matches are distributed among these distances:
44 15 0.39
45 2 0.05
46 21 0.55
ACGTcount: A:0.37, C:0.26, G:0.22, T:0.15
Consensus pattern (46 bp):
TCCCAAAAGACCACATAGAATTGTCCCGAAGGACCGCGTAGAAATA
Found at i:5263 original size:20 final size:20
Alignment explanation
Indices: 5235--5282 Score: 71
Period size: 20 Copynumber: 2.4 Consensus size: 20
5225 AGTACTCTTG
*
5235 GTATTGATGCTAAC-CTTTCA
1 GTATCGATGCTAACTC-TTCA
5255 GTATCGATGCTAACTCTTCA
1 GTATCGATGCTAACTCTTCA
5275 GTATCGAT
1 GTATCGAT
5283 ACTCTATGAA
Statistics
Matches: 26, Mismatches: 1, Indels: 2
0.90 0.03 0.07
Matches are distributed among these distances:
20 25 0.96
21 1 0.04
ACGTcount: A:0.25, C:0.21, G:0.17, T:0.38
Consensus pattern (20 bp):
GTATCGATGCTAACTCTTCA
Found at i:9317 original size:27 final size:27
Alignment explanation
Indices: 9304--9389 Score: 154
Period size: 27 Copynumber: 3.2 Consensus size: 27
9294 ATTTAGAACC
9304 CTAAACCACAAATTCTAACTAAAAACT
1 CTAAACCACAAATTCTAACTAAAAACT
*
9331 CTAAACCACAAAGTCTAACTAAAAACT
1 CTAAACCACAAATTCTAACTAAAAACT
*
9358 CTAAACCACAAAATCTAACTAAAAACT
1 CTAAACCACAAATTCTAACTAAAAACT
9385 CTAAA
1 CTAAA
9390 AAATAATAAA
Statistics
Matches: 57, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
27 57 1.00
ACGTcount: A:0.53, C:0.26, G:0.01, T:0.20
Consensus pattern (27 bp):
CTAAACCACAAATTCTAACTAAAAACT
Found at i:13325 original size:18 final size:17
Alignment explanation
Indices: 13277--13328 Score: 56
Period size: 18 Copynumber: 3.1 Consensus size: 17
13267 AAATAATAAA
*
13277 ATATTAA-ATAAAATTT
1 ATATTAATATAAAAATT
13293 A-ATTAAT-TAATAAATT
1 ATATTAATATAA-AAATT
13309 ATATTAAATATAAAAATT
1 ATATT-AATATAAAAATT
13327 AT
1 AT
13329 TTTTTATAAT
Statistics
Matches: 30, Mismatches: 1, Indels: 8
0.77 0.03 0.21
Matches are distributed among these distances:
15 8 0.27
16 6 0.20
17 3 0.10
18 10 0.33
19 3 0.10
ACGTcount: A:0.58, C:0.00, G:0.00, T:0.42
Consensus pattern (17 bp):
ATATTAATATAAAAATT
Found at i:13697 original size:41 final size:42
Alignment explanation
Indices: 13596--13713 Score: 193
Period size: 42 Copynumber: 2.8 Consensus size: 42
13586 TTCCCCGAAA
* *
13596 TCCCGTGTTTGTTTAATGTAATTCGTTTTCCGGAAAATGTTT
1 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
13638 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
1 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
**
13680 T-CCGTGTTTGTTTCACGTAATTTATTTTCCGGAA
1 TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAA
13714 TGTAATTCAT
Statistics
Matches: 72, Mismatches: 4, Indels: 1
0.94 0.05 0.01
Matches are distributed among these distances:
41 31 0.43
42 41 0.57
ACGTcount: A:0.18, C:0.17, G:0.19, T:0.47
Consensus pattern (42 bp):
TCCCGTGTTTGTTTCACGTAATTCGTTTTCCGGAAAATGTTT
Found at i:13929 original size:10 final size:9
Alignment explanation
Indices: 13914--13965 Score: 51
Period size: 8 Copynumber: 6.1 Consensus size: 9
13904 TATTTAAAAT
13914 ATATTTATTA
1 ATATTTA-TA
13924 ATATTTATA
1 ATATTTATA
13933 ATA-TTATA
1 ATATTTATA
13941 ATA-TTAT-
1 ATATTTATA
13948 AT-TTT-TA
1 ATATTTATA
13955 ATATTATATA
1 ATATT-TATA
13965 A
1 A
13966 AATAATCAAT
Statistics
Matches: 37, Mismatches: 0, Indels: 10
0.79 0.00 0.21
Matches are distributed among these distances:
6 1 0.03
7 6 0.16
8 14 0.38
9 6 0.16
10 10 0.27
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (9 bp):
ATATTTATA
Found at i:13941 original size:8 final size:8
Alignment explanation
Indices: 13922--13996 Score: 52
Period size: 8 Copynumber: 9.8 Consensus size: 8
13912 ATATATTTAT
13922 TAATATTTA
1 TAATA-TTA
13931 TAATATTA
1 TAATATTA
13939 TAATATTA
1 TAATATTA
*
13947 T-AT-TTT
1 TAATATTA
13953 TAATATTA
1 TAATATTA
**
13961 T-ATAAAA
1 TAATATTA
13968 TAATCA--A
1 TAAT-ATTA
*
13975 TTATATTA
1 TAATATTA
*
13983 TAATAATA
1 TAATATTA
13991 TAATAT
1 TAATAT
13997 AAGATATTAT
Statistics
Matches: 52, Mismatches: 8, Indels: 13
0.71 0.11 0.18
Matches are distributed among these distances:
6 4 0.08
7 13 0.25
8 29 0.56
9 6 0.12
ACGTcount: A:0.49, C:0.01, G:0.00, T:0.49
Consensus pattern (8 bp):
TAATATTA
Found at i:13958 original size:14 final size:14
Alignment explanation
Indices: 13913--13963 Score: 57
Period size: 14 Copynumber: 3.4 Consensus size: 14
13903 ATATTTAAAA
13913 TATATTTATTAATATT
1 TATATTT-TTAATA-T
*
13929 TATAATATTATAATAT
1 TAT-AT-TTTTAATAT
13945 TATATTTTTAATAT
1 TATATTTTTAATAT
13959 TATAT
1 TATAT
13964 AAAATAATCA
Statistics
Matches: 31, Mismatches: 2, Indels: 6
0.79 0.05 0.15
Matches are distributed among these distances:
14 13 0.42
15 2 0.06
16 7 0.23
17 7 0.23
18 2 0.06
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (14 bp):
TATATTTTTAATAT
Found at i:14050 original size:20 final size:21
Alignment explanation
Indices: 14012--14053 Score: 59
Period size: 20 Copynumber: 2.0 Consensus size: 21
14002 ATTATATTTT
14012 TATTTTAATAATATATAATAA
1 TATTTTAATAATATATAATAA
* *
14033 TATTTTTAT-ATATTTAATAA
1 TATTTTAATAATATATAATAA
14053 T
1 T
14054 GAATAATATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
20 11 0.58
21 8 0.42
ACGTcount: A:0.45, C:0.00, G:0.00, T:0.55
Consensus pattern (21 bp):
TATTTTAATAATATATAATAA
Found at i:14050 original size:27 final size:28
Alignment explanation
Indices: 14020--14077 Score: 93
Period size: 27 Copynumber: 2.1 Consensus size: 28
14010 TTTATTTTAA
14020 TAATATAT-AATAATATT-TTTATATATT
1 TAATA-ATGAATAATATTATTTATATATT
14047 TAATAATGAATAATATTATTTATATATT
1 TAATAATGAATAATATTATTTATATATT
14075 TAA
1 TAA
14078 ACAATATTTT
Statistics
Matches: 29, Mismatches: 0, Indels: 3
0.91 0.00 0.09
Matches are distributed among these distances:
26 2 0.07
27 14 0.48
28 13 0.45
ACGTcount: A:0.47, C:0.00, G:0.02, T:0.52
Consensus pattern (28 bp):
TAATAATGAATAATATTATTTATATATT
Found at i:14067 original size:30 final size:30
Alignment explanation
Indices: 13990--14077 Score: 98
Period size: 30 Copynumber: 3.0 Consensus size: 30
13980 TTATAATAAT
13990 ATAATATA-AGATATTATATTTT-TAT-TTTA
1 ATAATATATA-ATATTAT-TTTTATATATTTA
*
14019 ATAATATATAATAATATTTTTATATATTTA
1 ATAATATATAATATTATTTTTATATATTTA
14049 ATAATGA-ATAATATTA--TTTATATATTTA
1 ATAAT-ATATAATATTATTTTTATATATTTA
14077 A
1 A
14078 ACAATATTTT
Statistics
Matches: 53, Mismatches: 2, Indels: 9
0.83 0.03 0.14
Matches are distributed among these distances:
28 17 0.32
29 17 0.32
30 18 0.34
31 1 0.02
ACGTcount: A:0.45, C:0.00, G:0.02, T:0.52
Consensus pattern (30 bp):
ATAATATATAATATTATTTTTATATATTTA
Found at i:14492 original size:20 final size:20
Alignment explanation
Indices: 14414--14483 Score: 131
Period size: 20 Copynumber: 3.5 Consensus size: 20
14404 TTTCCAGATG
*
14414 TTTTCCAGAAATGTAATTCG
1 TTTTCCAGAAATGTAATTCA
14434 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
14454 TTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCA
14474 TTTTCCAGAA
1 TTTTCCAGAA
14484 TTCAAATTCC
Statistics
Matches: 49, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
20 49 1.00
ACGTcount: A:0.33, C:0.16, G:0.11, T:0.40
Consensus pattern (20 bp):
TTTTCCAGAAATGTAATTCA
Found at i:14492 original size:40 final size:40
Alignment explanation
Indices: 14414--14492 Score: 122
Period size: 40 Copynumber: 2.0 Consensus size: 40
14404 TTTCCAGATG
* **
14414 TTTTCCAGAAATGTAATTCGTTTTCCAGAAATGTAATTCA
1 TTTTCCAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
*
14454 TTTTCCAGAAATGTAATTCATTTTCCAGAATTCAAATTC
1 TTTTCCAGAAATGTAATTCATTTTCCAGAAATCAAATTC
14493 CAGTAATTTA
Statistics
Matches: 35, Mismatches: 4, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
40 35 1.00
ACGTcount: A:0.33, C:0.16, G:0.10, T:0.41
Consensus pattern (40 bp):
TTTTCCAGAAATGTAATTCATTTTCCAGAAATCAAATTCA
Found at i:14493 original size:14 final size:15
Alignment explanation
Indices: 14466--14515 Score: 57
Period size: 15 Copynumber: 3.4 Consensus size: 15
14456 TTCCAGAAAT
**
14466 GTAATTCATTTTCCA
1 GTAATTCAAATTCCA
14481 G-AATTCAAATTCCA
1 GTAATTCAAATTCCA
* *
14495 GTAATTTAAATTGCA
1 GTAATTCAAATTCCA
14510 GTAATT
1 GTAATT
14516 TATTTTCTGG
Statistics
Matches: 30, Mismatches: 4, Indels: 2
0.83 0.11 0.06
Matches are distributed among these distances:
14 12 0.40
15 18 0.60
ACGTcount: A:0.36, C:0.14, G:0.10, T:0.40
Consensus pattern (15 bp):
GTAATTCAAATTCCA
Found at i:14505 original size:15 final size:15
Alignment explanation
Indices: 14476--14517 Score: 59
Period size: 15 Copynumber: 2.9 Consensus size: 15
14466 GTAATTCATT
*
14476 TTCCAG-AATTCAAA
1 TTCCAGTAATTTAAA
14490 TTCCAGTAATTTAAA
1 TTCCAGTAATTTAAA
*
14505 TTGCAGTAATTTA
1 TTCCAGTAATTTA
14518 TTTTCTGGAA
Statistics
Matches: 25, Mismatches: 2, Indels: 1
0.89 0.07 0.04
Matches are distributed among these distances:
14 6 0.24
15 19 0.76
ACGTcount: A:0.38, C:0.14, G:0.10, T:0.38
Consensus pattern (15 bp):
TTCCAGTAATTTAAA
Found at i:15246 original size:18 final size:18
Alignment explanation
Indices: 15192--15247 Score: 51
Period size: 18 Copynumber: 3.0 Consensus size: 18
15182 TGTATTGATG
* *
15192 TATTTTGTTAATATATAT
1 TATTTAGTTAATATAAAT
*
15210 TATATTATATTAA-ATTAAAT
1 TAT-TTA-GTTAATA-TAAAT
15230 TATTTAGTTAATATAAAT
1 TATTTAGTTAATATAAAT
15248 AATTATTTTG
Statistics
Matches: 30, Mismatches: 4, Indels: 8
0.71 0.10 0.19
Matches are distributed among these distances:
18 12 0.40
19 7 0.23
20 11 0.37
ACGTcount: A:0.43, C:0.00, G:0.04, T:0.54
Consensus pattern (18 bp):
TATTTAGTTAATATAAAT
Found at i:17605 original size:30 final size:29
Alignment explanation
Indices: 17556--17709 Score: 113
Period size: 29 Copynumber: 5.2 Consensus size: 29
17546 AAATCTATGA
*
17556 TATTTTATATTTAACTTTTAAAAATATAATT
1 TATTTTATCTTTAA--TTTAAAAATATAATT
*
17587 TATTTTAAT-TTTAATTTTAAAAA-AAAATT
1 TATTTT-ATCTTTAA-TTTAAAAATATAATT
* *
17616 TATTCTTATCTTCAATTT-AAAATATATTT
1 TATT-TTATCTTTAATTTAAAAATATAATT
*
17645 TATTCTTAT-TTTAACTT-AAAATATATATT
1 TATT-TTATCTTTAATTTAAAAATATA-ATT
* **
17674 TCATTTTCATCTTGAA-TTAAAAATATGTTT
1 T-ATTTT-ATCTTTAATTTAAAAATATAATT
17704 TATTTT
1 TATTTT
17710 TATTTGAAAT
Statistics
Matches: 104, Mismatches: 10, Indels: 20
0.78 0.07 0.15
Matches are distributed among these distances:
28 18 0.17
29 37 0.36
30 25 0.24
31 22 0.21
32 2 0.02
ACGTcount: A:0.38, C:0.06, G:0.01, T:0.55
Consensus pattern (29 bp):
TATTTTATCTTTAATTTAAAAATATAATT
Found at i:17640 original size:58 final size:57
Alignment explanation
Indices: 17573--17727 Score: 161
Period size: 59 Copynumber: 2.6 Consensus size: 57
17563 TATTTAACTT
*
17573 TTAAAAATATAATTTATTTTAATTTTAATTTTAAAAAAAAATTTATTCTT-ATCTTCAA
1 TTAAAAATATATTTTATTTT-ATTTTAA-TTTAAAAAAAAATTTATTCTTCATCTTCAA
* * * * *
17631 TTTAAAATATATTTTATTCTTATTTTAACTTAAAATATATATTTCATT-TTCATCTTGAA
1 TTAAAAATATATTTTATT-TTATTTTAATTTAAAA-AAAAATTT-ATTCTTCATCTTCAA
* * *
17690 TTAAAAATATGTTTTATTTTTATTTGAAATTAAAAAAA
1 TTAAAAATATATTTTA-TTTTATTTTAATTTAAAAAAA
17728 TAAATATTAT
Statistics
Matches: 81, Mismatches: 11, Indels: 10
0.79 0.11 0.10
Matches are distributed among these distances:
57 6 0.07
58 33 0.41
59 40 0.49
60 2 0.02
ACGTcount: A:0.42, C:0.05, G:0.02, T:0.51
Consensus pattern (57 bp):
TTAAAAATATATTTTATTTTATTTTAATTTAAAAAAAAATTTATTCTTCATCTTCAA
Found at i:17708 original size:29 final size:28
Alignment explanation
Indices: 17573--17725 Score: 114
Period size: 29 Copynumber: 5.2 Consensus size: 28
17563 TATTTAACTT
* *
17573 TTAAAAATATAATTTATT-TTAATTTTAA
1 TTAAAAATATATTTTATTCTT-ATTTGAA
* * *
17601 TTTTAAAAA-AAAATTTATTCTTATCTTCAA
1 --TTAAAAATATATTTTATTCTTAT-TTGAA
* *
17631 TTTAAAATATATTTTATTCTTATTTTAA
1 TTAAAAATATATTTTATTCTTATTTGAA
*
17659 CTTAAAATATATATTTCATT-TTCATCTTGAA
1 -TTAAAA-ATATATTTTATTCTT-AT-TTGAA
* *
17690 TTAAAAATATGTTTTATTTTTATTTGAAA
1 TTAAAAATATATTTTATTCTTATTTG-AA
17719 TTAAAAA
1 TTAAAAA
17726 AATAAATATT
Statistics
Matches: 103, Mismatches: 11, Indels: 19
0.77 0.08 0.14
Matches are distributed among these distances:
28 13 0.13
29 52 0.50
30 34 0.33
31 4 0.04
ACGTcount: A:0.41, C:0.05, G:0.02, T:0.52
Consensus pattern (28 bp):
TTAAAAATATATTTTATTCTTATTTGAA
Found at i:20476 original size:54 final size:54
Alignment explanation
Indices: 20411--20907 Score: 684
Period size: 54 Copynumber: 9.3 Consensus size: 54
20401 GTACTATCGA
20411 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
* * * * * *
20465 AACTATGTGTGCAACCCATGAAATTCATCATATGTTGATGAACAACTGTTTTGA
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
*
20519 CACTATGTGTGCAACCCAC-ATAATTCATCATATGTTGATGAACAACCGTTTCGG
1 CACTATGTGTGCAACTCACGA-AATTCATCATATGTTGATGAACAACCGTTTCGG
* * * * * *
20573 TACTATGTGTGTAACTCA-TAGAATTCATCATATGTTGATGAACAATCATTTCAG
1 CACTATGTGTGCAACTCACGA-AATTCATCATATGTTGATGAACAACCGTTTCGG
* *
20627 CACTATGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCATTTCGG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
20681 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATG---AACCGTTTCGG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
* *
20732 CACTATGTGT-CAACCCAC-ATAATTCATCATATGTTGATGAACAACCGTTTTGG
1 CACTATGTGTGCAACTCACGA-AATTCATCATATGTTGATGAACAACCGTTTCGG
* * * * *
20785 CACTATGTGTACAAATCACGAAATTCATCATATGTTGATGAACAATCATTTTGG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
* * *
20839 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGGTGAACAACCGTTTTGA
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
*
20893 CAATATGTGTGCAAC
1 CACTATGTGTGCAAC
20908 CCATTATATG
Statistics
Matches: 395, Mismatches: 39, Indels: 18
0.87 0.09 0.04
Matches are distributed among these distances:
49 1 0.00
50 26 0.07
51 20 0.05
53 21 0.05
54 325 0.82
55 2 0.01
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32
Consensus pattern (54 bp):
CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGG
Found at i:20660 original size:27 final size:27
Alignment explanation
Indices: 20630--20715 Score: 70
Period size: 27 Copynumber: 3.2 Consensus size: 27
20620 ATTTCAGCAC
20630 TATGTGTGCAACCCACGAAATTCATCA
1 TATGTGTGCAACCCACGAAATTCATCA
* * * **
20657 TATGTTGATG-AA-CAAC-CATTTCGGCA
1 TATG-TG-TGCAACCCACGAAATTCATCA
*
20683 CTATGTGTGCAACTCACGAAATTCATCA
1 -TATGTGTGCAACCCACGAAATTCATCA
20711 TATGT
1 TATGT
20716 TGATGAACCG
Statistics
Matches: 42, Mismatches: 11, Indels: 12
0.65 0.17 0.18
Matches are distributed among these distances:
25 2 0.05
26 10 0.24
27 18 0.43
28 10 0.24
29 2 0.05
ACGTcount: A:0.31, C:0.22, G:0.16, T:0.30
Consensus pattern (27 bp):
TATGTGTGCAACCCACGAAATTCATCA
Found at i:20844 original size:212 final size:215
Alignment explanation
Indices: 20411--20910 Score: 783
Period size: 212 Copynumber: 2.3 Consensus size: 215
20401 GTACTATCGA
*
20411 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGGAACTATGTGTG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTG
* *
20476 CAACCCATGAAATTCATCATATGTTGATGAACAACTGTTTTGACACTATGTGTGCAACCCACATA
66 CAACCCACGAAATTCATCATATGTTGATGAAC-ACTGTTTCGACACTATGTGTGCAACCCACATA
* ** * *
20541 ATTCATCATATGTTGATGAACAACCGTTTCGGTACTATGTGTGTAACTCATAGAATTCATCATAT
130 ATTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTACAAATCAGAGAATTCATCATAT
20606 GTTGATGAACAATCATTTCAG
195 GTTGATGAACAATCATTTCAG
* *
20627 CACTATGTGTGCAACCCACGAAATTCATCATATGTTGATGAACAACCATTTCGGCACTATGTGTG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTG
* *
20692 CAACTCACGAAATTCATCATATGTTGATGAAC-C-GTTTCGGCACTATGTGT-CAACCCACATAA
66 CAACCCACGAAATTCATCATATGTTGATGAACACTGTTTCGACACTATGTGTGCAACCCACATAA
*
20754 TTCATCATATGTTGATGAACAACCGTTTTGGCACTATGTGTACAAATCACGA-AATTCATCATAT
131 TTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTACAAATCA-GAGAATTCATCATAT
**
20818 GTTGATGAACAATCATTTTGG
195 GTTGATGAACAATCATTTCAG
* * * *
20839 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGGTGAACAACCGTTTTGACAATATGTGTG
1 CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTG
20904 CAACCCA
66 CAACCCA
20911 TTATATGATA
Statistics
Matches: 261, Mismatches: 22, Indels: 6
0.90 0.08 0.02
Matches are distributed among these distances:
212 152 0.58
213 16 0.06
214 1 0.00
216 92 0.35
ACGTcount: A:0.31, C:0.21, G:0.17, T:0.31
Consensus pattern (215 bp):
CACTATGTGTGCAACTCACGAAATTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTG
CAACCCACGAAATTCATCATATGTTGATGAACACTGTTTCGACACTATGTGTGCAACCCACATAA
TTCATCATATGTTGATGAACAACCGTTTCGGCACTATGTGTACAAATCAGAGAATTCATCATATG
TTGATGAACAATCATTTCAG
Found at i:21143 original size:45 final size:45
Alignment explanation
Indices: 21082--21208 Score: 173
Period size: 45 Copynumber: 2.8 Consensus size: 45
21072 ATTATTTGCT
* * *
21082 TAACGGTGCTTTAAAGGCGTGAAAGGATGCCATACATGAAATACA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATACA
* * *
21127 TAACTGTGCATTAAAGGCATGAAAGAATGTCATAAATGAAATACA
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATACA
* * *
21172 TAAAGGTGCATTAAAAGCATGAAAGGATGCCCTAAAT
1 TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAAT
21209 AAAAATAATG
Statistics
Matches: 70, Mismatches: 12, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
45 70 1.00
ACGTcount: A:0.43, C:0.13, G:0.21, T:0.23
Consensus pattern (45 bp):
TAACGGTGCATTAAAGGCATGAAAGGATGCCATAAATGAAATACA
Found at i:23437 original size:45 final size:45
Alignment explanation
Indices: 23387--23555 Score: 261
Period size: 45 Copynumber: 3.8 Consensus size: 45
23377 TATAAAATTT
* * *
23387 CTTACCACTTA-TCCTATAAGCTCGTAAACTTATTTTACCAAAATA
1 CTTACCATTTATTCC-ATAAGCTCGTAAGCTTATTTTACCAATATA
*
23432 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATACA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
23477 CTTGCCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
*
23522 CTTACCATTTA-TCCATAAGCTCATAAGCTTATTT
1 CTTACCATTTATTCCATAAGCTCGTAAGCTTATTT
23556 GCATGGTTAC
Statistics
Matches: 115, Mismatches: 8, Indels: 3
0.91 0.06 0.02
Matches are distributed among these distances:
44 22 0.19
45 90 0.78
46 3 0.03
ACGTcount: A:0.31, C:0.24, G:0.07, T:0.38
Consensus pattern (45 bp):
CTTACCATTTATTCCATAAGCTCGTAAGCTTATTTTACCAATATA
Found at i:33507 original size:39 final size:39
Alignment explanation
Indices: 33449--33537 Score: 115
Period size: 39 Copynumber: 2.3 Consensus size: 39
33439 TCTATAACTT
* * *
33449 GTAAGTCCTTACCTTAAGCTTCTCGACTTTGTGCTCAGG
1 GTAAGTCCTTACCTCAAGCTCCTCAACTTTGTGCTCAGG
* * * *
33488 GTAAGTCGTTACCTCAAGCTCCTCAATTTTTTGCTTAGG
1 GTAAGTCCTTACCTCAAGCTCCTCAACTTTGTGCTCAGG
33527 GTAAGTCCTTA
1 GTAAGTCCTTA
33538 TACTATGTGT
Statistics
Matches: 42, Mismatches: 8, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
39 42 1.00
ACGTcount: A:0.20, C:0.24, G:0.19, T:0.37
Consensus pattern (39 bp):
GTAAGTCCTTACCTCAAGCTCCTCAACTTTGTGCTCAGG
Found at i:34944 original size:24 final size:24
Alignment explanation
Indices: 34911--34972 Score: 88
Period size: 24 Copynumber: 2.6 Consensus size: 24
34901 TGAGGGTCGC
* **
34911 ACCACAAGAGCAGGGGAATCGTGT
1 ACCACAAGAGCAGAGGAATCGCAT
*
34935 GCCACAAGAGCAGAGGAATCGCAT
1 ACCACAAGAGCAGAGGAATCGCAT
34959 ACCACAAGAGCAGA
1 ACCACAAGAGCAGA
34973 CAAATCATGT
Statistics
Matches: 33, Mismatches: 5, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
24 33 1.00
ACGTcount: A:0.39, C:0.24, G:0.29, T:0.08
Consensus pattern (24 bp):
ACCACAAGAGCAGAGGAATCGCAT
Found at i:39993 original size:14 final size:14
Alignment explanation
Indices: 39976--40014 Score: 51
Period size: 14 Copynumber: 2.8 Consensus size: 14
39966 GTCAAAGTAT
*
39976 ACGAGTTGACTCGG
1 ACGAGTTGACTCAG
* *
39990 ACGAGTTAACTCAT
1 ACGAGTTGACTCAG
40004 ACGAGTTGACT
1 ACGAGTTGACT
40015 TAGTTCGGTT
Statistics
Matches: 21, Mismatches: 4, Indels: 0
0.84 0.16 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.28, C:0.21, G:0.26, T:0.26
Consensus pattern (14 bp):
ACGAGTTGACTCAG
Found at i:41007 original size:15 final size:15
Alignment explanation
Indices: 40987--41017 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
40977 CTCTTCCAAA
40987 ATTTCTAATTCTTCC
1 ATTTCTAATTCTTCC
41002 ATTTCTAATTCTTCC
1 ATTTCTAATTCTTCC
41017 A
1 A
41018 AATGCTCTCA
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.23, C:0.26, G:0.00, T:0.52
Consensus pattern (15 bp):
ATTTCTAATTCTTCC
Found at i:42321 original size:17 final size:17
Alignment explanation
Indices: 42299--42332 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
42289 ACTATTTAAC
42299 ATGCAATGCAACATGAA
1 ATGCAATGCAACATGAA
*
42316 ATGCAATTCAACATGAA
1 ATGCAATGCAACATGAA
42333 TTAATATGTA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.47, C:0.18, G:0.15, T:0.21
Consensus pattern (17 bp):
ATGCAATGCAACATGAA
Found at i:44079 original size:19 final size:16
Alignment explanation
Indices: 44029--44080 Score: 56
Period size: 16 Copynumber: 3.2 Consensus size: 16
44019 TCACTTTGGT
44029 TTTTTTC-TT-TTTT-
1 TTTTTTCTTTCTTTTC
44042 TTTTTTCTTTCTTTTC
1 TTTTTTCTTTCTTTTC
44058 TTTTTTCTTCTCATTTTCC
1 TTTTTTCTT-TC-TTTT-C
44077 TTTT
1 TTTT
44081 ATTCATCTAA
Statistics
Matches: 33, Mismatches: 0, Indels: 6
0.85 0.00 0.15
Matches are distributed among these distances:
13 7 0.21
14 2 0.06
15 4 0.12
16 9 0.27
17 2 0.06
18 4 0.12
19 5 0.15
ACGTcount: A:0.02, C:0.17, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTTCTTTCTTTTC
Found at i:44757 original size:1 final size:1
Alignment explanation
Indices: 44746--44869 Score: 131
Period size: 1 Copynumber: 124.0 Consensus size: 1
44736 TGAACCCTTA
* * * * * *
44746 TTTTCTTTTTTTTTTTTTCTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTCTTTTTCTTTTTCTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
* * * ** * *
44811 TTTTCTTTTTTCTTTTTTTTTTCTTTTTTTTTTTTTTTCATTTTTTTGTTTTCTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
44870 AAGGATAATA
Statistics
Matches: 98, Mismatches: 25, Indels: 0
0.80 0.20 0.00
Matches are distributed among these distances:
1 98 1.00
ACGTcount: A:0.01, C:0.09, G:0.01, T:0.90
Consensus pattern (1 bp):
T
Found at i:44765 original size:14 final size:14
Alignment explanation
Indices: 44746--44869 Score: 162
Period size: 14 Copynumber: 8.8 Consensus size: 14
44736 TGAACCCTTA
44746 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
44760 TTTTCTTTTTTTTTTT
1 TTTTC--TTTTTTTTT
44776 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
*
44790 TTTT-TTCTTTTTCT
1 TTTTCTT-TTTTTTT
*
44804 TTTTCTTTTTTCTT
1 TTTTCTTTTTTTTT
44818 TTTTCTTTTTTTTT
1 TTTTCTTTTTTTTT
*
44832 TCTT-TTTTTTTTT
1 TTTTCTTTTTTTTT
* *
44845 TTTTCATTTTTTTG
1 TTTTCTTTTTTTTT
44859 TTTTCTTTTTT
1 TTTTCTTTTTT
44870 AAGGATAATA
Statistics
Matches: 96, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
13 14 0.15
14 66 0.69
15 2 0.02
16 14 0.15
ACGTcount: A:0.01, C:0.09, G:0.01, T:0.90
Consensus pattern (14 bp):
TTTTCTTTTTTTTT
Found at i:44770 original size:16 final size:17
Alignment explanation
Indices: 44751--44868 Score: 161
Period size: 16 Copynumber: 6.8 Consensus size: 17
44741 CCTTATTTTC
44751 TTTTTTTTTTTTTC-TT
1 TTTTTTTTTTTTTCTTT
44767 TTTTTTTTTTTTTC-TT
1 TTTTTTTTTTTTTCTTT
44783 TTTTTTTTTTTTTCTTT
1 TTTTTTTTTTTTTCTTT
44800 TTCTTTTTCTTTTTTCTTT
1 TT-TTTTT-TTTTTTCTTT
44819 TTTCTTTTTTTTTTC-TT
1 TTT-TTTTTTTTTTCTTT
44836 TTTTTTTTTTTTTCATTT
1 TTTTTTTTTTTTTC-TTT
44854 TTTTGTTTTCTTTTT
1 TTTT-TTTT-TTTTT
44869 TAAGGATAAT
Statistics
Matches: 94, Mismatches: 0, Indels: 12
0.89 0.00 0.11
Matches are distributed among these distances:
16 41 0.44
17 9 0.10
18 19 0.20
19 20 0.21
20 5 0.05
ACGTcount: A:0.01, C:0.08, G:0.01, T:0.90
Consensus pattern (17 bp):
TTTTTTTTTTTTTCTTT
Found at i:60262 original size:34 final size:34
Alignment explanation
Indices: 60219--60554 Score: 249
Period size: 34 Copynumber: 9.6 Consensus size: 34
60209 TTATTTTTAA
* *
60219 AAAACATATAATATAAAG-TTTTAAAAAAGTTATG
1 AAAACATATAATATATAGTTTTTAAAAAA-TTTTG
* *
60253 AAAACATATAGTATATAGTTTTTAAATAATTTTG
1 AAAACATATAATATATAGTTTTTAAAAAATTTTG
* **
60287 AAAACGTATAATATATAGTTTTTAAAACGGTTTTG
1 AAAACATATAATATATAGTTTTTAAAA-AATTTTG
* *
60322 AAAACATATAGTACATAGTTTTTAAAAATAATTTTG
1 AAAACATATAATATATAGTTTTT-AAAA-AATTTTG
*
60358 AAAACGTATAATA-A-AGTTTTTAAAATAATTTTG
1 AAAACATATAATATATAGTTTTTAAAA-AATTTTG
* *
60391 AAAACGTATAATATATAG---TTAAAACACGGTTTTG
1 AAAACATATAATATATAGTTTTTAAAA-A--ATTTTG
* * * *
60425 AAAACTTATAGTATATGGTTTTCTTAAAACGATTTTG
1 AAAACATATAATATATAG-TTT-TTAAAA-AATTTTG
* *
60462 AAAACGTATAATATATA-TTTTTAAAAGCGATTTTTG
1 AAAACATATAATATATAGTTTTTAAAA---AATTTTG
* * *
60498 AGAACATATAA-A-ATAATTTTTGAAAACATATTTG
1 AAAACATATAATATATAGTTTTT-AAAAAAT-TTTG
* *
60532 AAAATATAGTATTATATAGTTTT
1 AAAACATA-TAATATATAGTTTT
60555 GGTTATTACA
Statistics
Matches: 244, Mismatches: 38, Indels: 37
0.76 0.12 0.12
Matches are distributed among these distances:
32 7 0.03
33 26 0.11
34 91 0.37
35 48 0.20
36 39 0.16
37 26 0.11
39 7 0.03
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (34 bp):
AAAACATATAATATATAGTTTTTAAAAAATTTTG
Found at i:60331 original size:69 final size:69
Alignment explanation
Indices: 60219--60554 Score: 262
Period size: 69 Copynumber: 4.8 Consensus size: 69
60209 TTATTTTTAA
* * * *
60219 AAAACATATAATATAAAG-TTTTAAAA-AAGTTATGAAAACATATAGTATATAGTTTTTAAATAA
1 AAAACGTATAATATATAGTTTTTAAAACAA-TTTTGAAAACATATAATATATAGTTTTTAAATAA
60282 TTTTG
65 TTTTG
** * *
60287 AAAACGTATAATATATAGTTTTTAAAACGGTTTTGAAAACATATAGTACATAGTTTTTAAAAATA
1 AAAACGTATAATATATAGTTTTTAAAACAATTTTGAAAACATATAATATATAGTTTTT--AAATA
60352 ATTTTG
64 ATTTTG
* * * *
60358 AAAACGTATAATA-A-AGTTTTTAAAATAATTTTGAAAACGTATAATATATAG--TTAAAACACG
1 AAAACGTATAATATATAGTTTTTAAAACAATTTTGAAAACATATAATATATAGTTTTTAAATA--
*
60419 GTTTTG
64 ATTTTG
* * * * *
60425 AAAACTTATAGTATATGGTTTTCTTAAAACGATTTTGAAAACGTATAATATATA-TTTTTAAA-A
1 AAAACGTATAATATATAG-TTT-TTAAAACAATTTTGAAAACATATAATATATAGTTTTTAAATA
60488 GCGATTTTTG
64 ---A-TTTTG
* * * * *
60498 AGAACATATAA-A-ATAATTTTTGAAAAC-ATATTTGAAAATATAGTATTATATAGTTTT
1 AAAACGTATAATATATAGTTTTT-AAAACAAT-TTTGAAAACATA-TAATATATAGTTTT
60555 GGTTATTACA
Statistics
Matches: 220, Mismatches: 30, Indels: 32
0.78 0.11 0.11
Matches are distributed among these distances:
65 4 0.02
67 18 0.08
68 17 0.08
69 70 0.32
70 22 0.10
71 64 0.29
72 12 0.05
73 13 0.06
ACGTcount: A:0.45, C:0.05, G:0.11, T:0.39
Consensus pattern (69 bp):
AAAACGTATAATATATAGTTTTTAAAACAATTTTGAAAACATATAATATATAGTTTTTAAATAAT
TTTG
Found at i:60401 original size:104 final size:102
Alignment explanation
Indices: 60219--60487 Score: 321
Period size: 104 Copynumber: 2.6 Consensus size: 102
60209 TTATTTTTAA
* * * * * *
60219 AAAACATATAATATAAAG-TTTTAAAAAAGTTATGAAAACATATAGTATATAGTTTTT-AAATAA
1 AAAACATATAGTATATAGTTTTTAAAAAAATTTTGAAAACGTATA--ATAAAGTTTTTAAAATAA
*
60282 TTTTGAAAACGTATAATATATAGTTTTTAAA-ACGGTTTTG
64 TTTTGAAAACGTATAATATATAG--TTAAAACACGGTTTTG
*
60322 AAAACATATAGTACATAGTTTTTAAAAATAATTTTGAAAACGTATAATAAAGTTTTTAAAATAAT
1 AAAACATATAGTATATAGTTTTTAAAAA-AATTTTGAAAACGTATAATAAAGTTTTTAAAATAAT
60387 TTTGAAAACGTATAATATATAGTTAAAACACGGTTTTG
65 TTTGAAAACGTATAATATATAGTTAAAACACGGTTTTG
* * **
60425 AAAACTTATAGTATATGGTTTTCTTAAAACGATTTTGAAAACGTATAATATATA-TTTTTAAAA
1 AAAACATATAGTATATAG-TTT-TTAAAAAAATTTTGAAAACGTATAATA-A-AGTTTTTAAAA
60488 GCGATTTTTG
Statistics
Matches: 145, Mismatches: 13, Indels: 14
0.84 0.08 0.08
Matches are distributed among these distances:
102 5 0.03
103 49 0.34
104 60 0.41
105 30 0.21
106 1 0.01
ACGTcount: A:0.46, C:0.05, G:0.10, T:0.39
Consensus pattern (102 bp):
AAAACATATAGTATATAGTTTTTAAAAAAATTTTGAAAACGTATAATAAAGTTTTTAAAATAATT
TTGAAAACGTATAATATATAGTTAAAACACGGTTTTG
Found at i:60586 original size:4 final size:4
Alignment explanation
Indices: 60564--60604 Score: 64
Period size: 4 Copynumber: 10.0 Consensus size: 4
60554 TGGTTATTAC
*
60564 ATTT AGTT ATTT ATATT ATTT ATTT ATTT ATTT ATTT ATTT
1 ATTT ATTT ATTT AT-TT ATTT ATTT ATTT ATTT ATTT ATTT
60605 TTGTTTTTAG
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
4 30 0.88
5 4 0.12
ACGTcount: A:0.27, C:0.00, G:0.02, T:0.71
Consensus pattern (4 bp):
ATTT
Found at i:82520 original size:29 final size:29
Alignment explanation
Indices: 82475--82630 Score: 217
Period size: 29 Copynumber: 5.4 Consensus size: 29
82465 TAACAGAATT
* *
82475 AAAACTAACACCTTTTTAAAAATATTTATG
1 AAAA-TAACACCCTTTTAAAAATATTTACG
* * * *
82505 AAACTAACAACATTTT-AAAATATTTACA
1 AAAATAACACCCTTTTAAAAATATTTACG
82533 AAAATAACA-CCTTTTAAAAATATTTACG
1 AAAATAACACCCTTTTAAAAATATTTACG
*
82561 AAAATAACACCCTTTTAAAAATATTTACT
1 AAAATAACACCCTTTTAAAAATATTTACG
82590 AAAATAACACCCTTTTAAAAATATTTACG
1 AAAATAACACCCTTTTAAAAATATTTACG
*
82619 AAAATAGCACCC
1 AAAATAACACCC
82631 GGGTCGGGTC
Statistics
Matches: 113, Mismatches: 11, Indels: 5
0.88 0.09 0.04
Matches are distributed among these distances:
27 5 0.04
28 38 0.34
29 67 0.59
30 3 0.03
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (29 bp):
AAAATAACACCCTTTTAAAAATATTTACG
Found at i:82584 original size:57 final size:56
Alignment explanation
Indices: 82475--82630 Score: 222
Period size: 57 Copynumber: 2.7 Consensus size: 56
82465 TAACAGAATT
* * * * *
82475 AAAACTAACACCTTTTTAAAAATATTTATGAAACTAACAACATTTTAAAATATTTAC
1 AAAAATAACACC-TTTTAAAAATATTTACGAAAATAACACCCTTTTAAAATATTTAC
82532 AAAAATAACACCTTTTAAAAATATTTACGAAAATAACACCCTTTTAAAAATATTTAC
1 AAAAATAACACCTTTTAAAAATATTTACGAAAATAACACCCTTTT-AAAATATTTAC
* *
82589 TAAAATAACACCCTTTTAAAAATATTTACGAAAATAGCACCC
1 AAAAATAACA-CCTTTTAAAAATATTTACGAAAATAACACCC
82631 GGGTCGGGTC
Statistics
Matches: 90, Mismatches: 7, Indels: 3
0.90 0.07 0.03
Matches are distributed among these distances:
56 29 0.32
57 31 0.34
58 30 0.33
ACGTcount: A:0.49, C:0.17, G:0.03, T:0.31
Consensus pattern (56 bp):
AAAAATAACACCTTTTAAAAATATTTACGAAAATAACACCCTTTTAAAATATTTAC
Found at i:91446 original size:63 final size:63
Alignment explanation
Indices: 91347--91528 Score: 229
Period size: 63 Copynumber: 2.9 Consensus size: 63
91337 CATCCCCTCC
* * * * *
91347 CCTCTTCTTTACATTCTGATTGCAAACATTGTCCCCTTCCTTCAAAAACTTTTCCTCTGTTCT
1 CCTCTTCTTTCCATTCTGTTTGCTAACATTTTCCCCTTCCTTCAAAAACTTTTCCTCTGTTAT
* * * *
91410 CCTCTTCTTTCCATTCTTTTTGCTTACATTTTCCCCTTCATTCAAAAACGTTTCCTCTGTTAT
1 CCTCTTCTTTCCATTCTGTTTGCTAACATTTTCCCCTTCCTTCAAAAACTTTTCCTCTGTTAT
* * ** * *
91473 CCTGTTCTTTCCATTCTGTTTGCTGATGTTTTCCCCTTCCATCAAAAGCTTTTCCT
1 CCTCTTCTTTCCATTCTGTTTGCTAACATTTTCCCCTTCCTTCAAAAACTTTTCCT
91529 TACTACTATC
Statistics
Matches: 101, Mismatches: 18, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
63 101 1.00
ACGTcount: A:0.16, C:0.31, G:0.07, T:0.46
Consensus pattern (63 bp):
CCTCTTCTTTCCATTCTGTTTGCTAACATTTTCCCCTTCCTTCAAAAACTTTTCCTCTGTTAT
Found at i:95156 original size:31 final size:30
Alignment explanation
Indices: 95108--95166 Score: 73
Period size: 31 Copynumber: 1.9 Consensus size: 30
95098 TTTAAATTTT
* *
95108 GAAAGTTTAGTGACTAAAGTAGAAATTTGG
1 GAAAGTTTAGGGACTAAAGAAGAAATTTGG
* *
95138 GAAATGTTTAGGGTCTAAAGAAGTAATTT
1 GAAA-GTTTAGGGACTAAAGAAGAAATTT
95167 TCCTAAAAAG
Statistics
Matches: 24, Mismatches: 4, Indels: 1
0.83 0.14 0.03
Matches are distributed among these distances:
30 4 0.17
31 20 0.83
ACGTcount: A:0.39, C:0.03, G:0.25, T:0.32
Consensus pattern (30 bp):
GAAAGTTTAGGGACTAAAGAAGAAATTTGG
Found at i:97759 original size:3 final size:3
Alignment explanation
Indices: 97751--97775 Score: 50
Period size: 3 Copynumber: 8.3 Consensus size: 3
97741 AAATAAAGTA
97751 AAT AAT AAT AAT AAT AAT AAT AAT A
1 AAT AAT AAT AAT AAT AAT AAT AAT A
97776 TGTTTCTATA
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
3 22 1.00
ACGTcount: A:0.68, C:0.00, G:0.00, T:0.32
Consensus pattern (3 bp):
AAT
Found at i:97833 original size:22 final size:22
Alignment explanation
Indices: 97805--97972 Score: 139
Period size: 22 Copynumber: 7.5 Consensus size: 22
97795 AATTATATAA
97805 TATATATTATATTTTCAAAAAC
1 TATATATTATATTTTCAAAAAC
97827 TATATATATTATATGCTTTC-AAAAC
1 --TATATATTATAT--TTTCAAAAAC
* * *
97852 TGTATAATATGTTTTCAAAAA-
1 TATATATTATATTTTCAAAAAC
97873 TA-ATACTATATATTTTCAAAAAC
1 TATATA-T-TATATTTTCAAAAAC
* *
97896 TATATACTATATGTTTTAAAAAC
1 TATATATTATAT-TTTCAAAAAC
* *
97919 TATATAATATGTTTTCAAAAA-
1 TATATATTATATTTTCAAAAAC
*
97940 -ATATATTATATATTCTTAAAAAC
1 TATATATTATAT-TT-TCAAAAAC
*
97963 TATGTATTAT
1 TATATATTAT
97973 TATAACATAA
Statistics
Matches: 117, Mismatches: 15, Indels: 24
0.75 0.10 0.15
Matches are distributed among these distances:
20 12 0.10
21 7 0.06
22 36 0.31
23 30 0.26
24 23 0.20
25 5 0.04
26 4 0.03
ACGTcount: A:0.44, C:0.08, G:0.04, T:0.44
Consensus pattern (22 bp):
TATATATTATATTTTCAAAAAC
Found at i:97867 original size:21 final size:22
Alignment explanation
Indices: 97837--97938 Score: 111
Period size: 21 Copynumber: 4.6 Consensus size: 22
97827 TATATATATT
* *
97837 ATATGCTTTCAAAACTGTATA-
1 ATATGTTTTCAAAACTATATAC
*
97858 ATATGTTTTCAAAAATA-ATAC
1 ATATGTTTTCAAAACTATATAC
*
97879 TATATATTTTCAAAAACTATATAC
1 -ATATGTTTTC-AAAACTATATAC
*
97903 TATATGTTTTAAAAACTATATA-
1 -ATATGTTTTCAAAACTATATAC
97925 ATATGTTTTCAAAA
1 ATATGTTTTCAAAA
97939 AATATATTAT
Statistics
Matches: 69, Mismatches: 8, Indels: 8
0.81 0.09 0.09
Matches are distributed among these distances:
20 3 0.04
21 27 0.39
22 9 0.13
23 17 0.25
24 13 0.19
ACGTcount: A:0.44, C:0.10, G:0.05, T:0.41
Consensus pattern (22 bp):
ATATGTTTTCAAAACTATATAC
Found at i:97925 original size:67 final size:67
Alignment explanation
Indices: 97803--97965 Score: 215
Period size: 67 Copynumber: 2.4 Consensus size: 67
97793 AAAATTATAT
* * *
97803 AATATA-TATTATATTTTCAAAAACTATATATATTATATGCTTTCAAAACTGTATAATATGTTTT
1 AATATACTA-TATATTTTCAAAAAC--TATATACTATATGCTTTAAAAACTATATAATATGTTTT
97867 C-AAA
63 CAAAA
*
97871 AATAATACTATATATTTTCAAAAACTATATACTATATGTTTTAAAAACTATATAATATGTTTTCA
1 AAT-ATACTATATATTTTCAAAAACTATATACTATATGCTTTAAAAACTATATAATATGTTTTCA
97936 AAA
65 AAA
*
97939 AATATATTATATATTCTT-AAAAACTAT
1 AATATACTATATATT-TTCAAAAACTAT
97966 GTATTATTAT
Statistics
Matches: 86, Mismatches: 5, Indels: 9
0.86 0.05 0.09
Matches are distributed among these distances:
67 55 0.64
68 11 0.13
69 18 0.21
70 2 0.02
ACGTcount: A:0.45, C:0.09, G:0.03, T:0.43
Consensus pattern (67 bp):
AATATACTATATATTTTCAAAAACTATATACTATATGCTTTAAAAACTATATAATATGTTTTCAA
AA
Found at i:97934 original size:45 final size:44
Alignment explanation
Indices: 97831--97965 Score: 136
Period size: 45 Copynumber: 3.1 Consensus size: 44
97821 AAAAACTATA
* * *
97831 TATATTATATGCTTTC-AAAACTGTATA-ATATGTTTTCAAAAA-
1 TATATAATATGTTTTCAAAAACTATATATATATGTTTT-AAAAAC
*
97873 TA-ATACTATATATTTTCAAAAACTATATACTATATGTTTTAAAAAC
1 TATATA--ATATGTTTTCAAAAACTATATA-TATATGTTTTAAAAAC
* *
97919 TATATAATATGTTTTCAAAAAATATATTATATAT-TCTTAAAAAC
1 TATATAATATGTTTTCAAAAACTATA-TATATATGTTTTAAAAAC
97963 TAT
1 TAT
97966 GTATTATTAT
Statistics
Matches: 78, Mismatches: 7, Indels: 14
0.79 0.07 0.14
Matches are distributed among these distances:
41 2 0.03
42 2 0.03
43 8 0.10
44 22 0.28
45 28 0.36
46 13 0.17
47 3 0.04
ACGTcount: A:0.44, C:0.09, G:0.04, T:0.43
Consensus pattern (44 bp):
TATATAATATGTTTTCAAAAACTATATATATATGTTTTAAAAAC
Found at i:99427 original size:143 final size:143
Alignment explanation
Indices: 99169--99488 Score: 541
Period size: 143 Copynumber: 2.2 Consensus size: 143
99159 TAAGTTGGTC
*
99169 TTAAATCTTTGGATGACACCCCTTCATGGGAAAAGTAAATGAGATGACACCCCTTCGGGGTTTAA
1 TTAAATCTTTGGATGACACCCCTTCATGGGAAAGGTAAATGAGATGACACCCCTTCGGGGTTTAA
*
99234 GTCTGTCTTGATTCTTTAGATGAGCCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTTCTTCGT
66 GTCTGTCTTGATTCTTTAGATGAGCCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGT
99299 GGTTTATGTTGTT
131 GGTTTATGTTGTT
*
99312 TTAAATCTTTGGATGACACCTCTTCATGGGAAAGGTAAATGAGATGACACCCCTTCGGGGTTTAA
1 TTAAATCTTTGGATGACACCCCTTCATGGGAAAGGTAAATGAGATGACACCCCTTCGGGGTTTAA
* *
99377 GTCTTTCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGT
66 GTCTGTCTTGATTCTTTAGATGAGCCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGT
99442 GGTTTATGTTGTT
131 GGTTTATGTTGTT
* * * * * *
99455 ATGATTCTTTGGATAACTCCCCTTCATAGGAAAG
1 TTAAATCTTTGGATGACACCCCTTCATGGGAAAG
99489 CCAGGTGAGA
Statistics
Matches: 165, Mismatches: 12, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
143 165 1.00
ACGTcount: A:0.24, C:0.19, G:0.23, T:0.34
Consensus pattern (143 bp):
TTAAATCTTTGGATGACACCCCTTCATGGGAAAGGTAAATGAGATGACACCCCTTCGGGGTTTAA
GTCTGTCTTGATTCTTTAGATGAGCCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGT
GGTTTATGTTGTT
Found at i:99429 original size:72 final size:72
Alignment explanation
Indices: 99157--99630 Score: 359
Period size: 72 Copynumber: 6.6 Consensus size: 72
99147 GGCTTCGCGA
* * * * * ** * *
99157 TTTAAGTTGGTCTTAAATCTTTGGATGACACCCCTTCATGGGAAAAG-TAAATGAGATGACACCC
1 TTTAAGTTGTTCTTGATTCTTTAGATGACTCCCCTTCATGGG-AAAGCTAGGTAAGATGACTCCC
*
99221 CTTCGGGG
65 CTTCGTGG
* *
99229 TTTAAGTCTG-TCTTGATTCTTTAGATGAGC-CCCCTTCACGGGAAAGCTAGGTAAGATGACTCT
1 TTTAAGT-TGTTCTTGATTCTTTAGATGA-CTCCCCTTCATGGGAAAGCTAGGTAAGATGACTCC
*
99292 TCTTCGTGG
64 CCTTCGTGG
* * * * * * * ** * *
99301 TTTATGTTGTT-TTAAATCTTTGGATGACACCTCTTCATGGGAAAGGTAAATGAGATGACACCCC
1 TTTAAGTTGTTCTTGATTCTTTAGATGACTCCCCTTCATGGGAAAGCTAGGTAAGATGACTCCCC
*
99365 TTCGGGG
66 TTCGTGG
* * *
99372 TTTAAGTCT-TTCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTC
1 TTTAAGT-TGTTCTTGATTCTTTAGATGACTCCCCTTCATGGGAAAGCTAGGTAAGATGACTCCC
99436 CTTCGTGG
65 CTTCGTGG
* * * * * * *
99444 TTTATGTTGTT-ATGATTCTTTGGATAACTCCCCTTCATAGGAAAGCCAGGTGAGATGACTCCCC
1 TTTAAGTTGTTCTTGATTCTTTAGATGACTCCCCTTCATGGGAAAGCTAGGTAAGATGACTCCCC
* * **
99508 TACATAA
66 TTCGTGG
* * * * * * * *
99515 TTTAAGTTGATCTTGATTCTTTAAATAACTCCCCTTCATGGGAAAGCCAGATGAGATTACTCCCT
1 TTTAAGTTGTTCTTGATTCTTTAGATGACTCCCCTTCATGGGAAAGCTAGGTAAGATGACTCCCC
**
99580 TTCACGG
66 TTCGTGG
*** * * *
99587 TTTAAGTCAATCTTGGTT-TCTTAGATGACTTCCCTCCATGGGAA
1 TTTAAGTTGTTCTTGATTCT-TTAGATGACTCCCCTTCATGGGAA
99631 TACTAGATGA
Statistics
Matches: 318, Mismatches: 74, Indels: 20
0.77 0.18 0.05
Matches are distributed among these distances:
70 1 0.00
71 117 0.37
72 197 0.62
73 3 0.01
ACGTcount: A:0.24, C:0.20, G:0.21, T:0.34
Consensus pattern (72 bp):
TTTAAGTTGTTCTTGATTCTTTAGATGACTCCCCTTCATGGGAAAGCTAGGTAAGATGACTCCCC
TTCGTGG
Found at i:99498 original size:143 final size:143
Alignment explanation
Indices: 99170--99561 Score: 500
Period size: 143 Copynumber: 2.7 Consensus size: 143
99160 AAGTTGGTCT
* * *
99170 TAAATCTTTGGATGACACCCCTTCATGGGAAAAG-TAAATGAGATGACACCCCTTCGGGGTTTAA
1 TAAATCTTTGGATAACACCCCTTCATAGG-AAAGCCAAATGAGATGACACCCCTTCGGGGTTTAA
* * *
99234 GTCTGTCTTGATTCTTTAGATGAGCCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTTCTTCGT
65 GTCTATCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGT
*
99299 GGTTTATGTTGTTT
130 GGTTTATGTTGTTA
* * * **
99313 TAAATCTTTGGATGACACCTCTTCATGGGAAAGGTAAATGAGATGACACCCCTTCGGGGTTTAAG
1 TAAATCTTTGGATAACACCCCTTCATAGGAAAGCCAAATGAGATGACACCCCTTCGGGGTTTAAG
*
99378 TCTTTCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGTG
66 TCTATCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGTG
99443 GTTTATGTTGTTA
131 GTTTATGTTGTTA
* * * ** * * ****
99456 TGATTCTTTGGATAACTCCCCTTCATAGGAAAGCCAGGTGAGATGACTCCCCTACATAATTTAAG
1 TAAATCTTTGGATAACACCCCTTCATAGGAAAGCCAAATGAGATGACACCCCTTCGGGGTTTAAG
* * * *
99521 T-TGATCTTGATTCTTTAAATAACTCCCCTTCATGGGAAAGC
66 TCT-ATCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGC
99562 CAGATGAGAT
Statistics
Matches: 221, Mismatches: 26, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
142 5 0.02
143 216 0.98
ACGTcount: A:0.25, C:0.20, G:0.21, T:0.33
Consensus pattern (143 bp):
TAAATCTTTGGATAACACCCCTTCATAGGAAAGCCAAATGAGATGACACCCCTTCGGGGTTTAAG
TCTATCTTGATTCTTTAGATGAGTCCCCTTCACGGGAAAGCTAGGTAAGATGACTCTCCTTCGTG
GTTTATGTTGTTA
Found at i:105278 original size:20 final size:19
Alignment explanation
Indices: 105205--105284 Score: 65
Period size: 20 Copynumber: 3.9 Consensus size: 19
105195 CAAACTTCCT
105205 AAAGGAATGGATC-TCTTTTCC
1 AAAGGAAT-GATCAT-TTTT-C
*
105226 AAAGGAATTATCATTTTTC
1 AAAGGAATGATCATTTTTC
105245 ATAACGG-ATGGATCATTTTTC
1 A-AA-GGAAT-GATCATTTTTC
*
105266 AAAGGGAATGATCCTTTTT
1 AAA-GGAATGATCATTTTT
105285 GAAAAAGAAT
Statistics
Matches: 50, Mismatches: 4, Indels: 11
0.77 0.06 0.17
Matches are distributed among these distances:
19 2 0.04
20 24 0.48
21 24 0.48
ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38
Consensus pattern (19 bp):
AAAGGAATGATCATTTTTC
Found at i:105324 original size:21 final size:21
Alignment explanation
Indices: 105220--105325 Score: 58
Period size: 21 Copynumber: 5.1 Consensus size: 21
105210 AATGGATCTC
* * *
105220 TTTTCCAAAGGAAT-TATCAT
1 TTTTCAAAAGGGATATATCCT
* * ** *
105240 TTTTCATAACGGATGGATCAT
1 TTTTCAAAAGGGATATATCCT
105261 TTTTC-AAAGGGA-ATGATCCT
1 TTTTCAAAAGGGATAT-ATCCT
* * * *
105281 TTTTGAAAAAGAATCA-ATGCT
1 TTTTCAAAAGGGAT-ATATCCT
105302 TTTTCAAAAGGGATATATCCT
1 TTTTCAAAAGGGATATATCCT
105323 TTT
1 TTT
105326 ACTAGAAAAT
Statistics
Matches: 62, Mismatches: 18, Indels: 11
0.68 0.20 0.12
Matches are distributed among these distances:
20 24 0.39
21 37 0.60
23 1 0.02
ACGTcount: A:0.33, C:0.13, G:0.15, T:0.39
Consensus pattern (21 bp):
TTTTCAAAAGGGATATATCCT
Found at i:108136 original size:3 final size:3
Alignment explanation
Indices: 108130--108216 Score: 156
Period size: 3 Copynumber: 28.7 Consensus size: 3
108120 TGTAATAATA
108130 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
108178 TAT TAT TAT TAT TAT TAT TAT TAT GAT TAT TAT ATAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT -TAT TA
108217 ACTGGGACAA
Statistics
Matches: 81, Mismatches: 2, Indels: 2
0.95 0.02 0.02
Matches are distributed among these distances:
3 78 0.96
4 3 0.04
ACGTcount: A:0.34, C:0.00, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:110106 original size:21 final size:22
Alignment explanation
Indices: 110081--110137 Score: 73
Period size: 21 Copynumber: 2.7 Consensus size: 22
110071 TTGGAGAGAG
*
110081 AAAATCAAGAATAAAGGAGTA-
1 AAAATCAAGAATAAAGGAATAT
* *
110102 AAAATCAATAACAAAGGAATAT
1 AAAATCAAGAATAAAGGAATAT
110124 AAAAT-AAGAATAAA
1 AAAATCAAGAATAAA
110138 AGTTTCAGCC
Statistics
Matches: 30, Mismatches: 5, Indels: 2
0.81 0.14 0.05
Matches are distributed among these distances:
21 25 0.83
22 5 0.17
ACGTcount: A:0.67, C:0.05, G:0.12, T:0.16
Consensus pattern (22 bp):
AAAATCAAGAATAAAGGAATAT
Found at i:111513 original size:3 final size:3
Alignment explanation
Indices: 111505--111553 Score: 53
Period size: 3 Copynumber: 15.7 Consensus size: 3
111495 GGCCTATTTG
* * *
111505 TAA TAA TAA TAA TAT TAT TAA TAA TAA AAA TATA TAA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA
111552 TA
1 TA
111554 TAAAAATTAG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
3 34 0.85
4 6 0.15
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (3 bp):
TAA
Found at i:111543 original size:13 final size:12
Alignment explanation
Indices: 111509--111560 Score: 52
Period size: 12 Copynumber: 4.2 Consensus size: 12
111499 TATTTGTAAT
**
111509 AATAATAATATT
1 AATAATAATAAA
*
111521 ATTAATAATAAA
1 AATAATAATAAA
111533 AATATATAATAAA
1 AATA-ATAATAAA
111546 TAATAAT-ATAAA
1 -AATAATAATAAA
111558 AAT
1 AAT
111561 TAGGACAAAA
Statistics
Matches: 34, Mismatches: 4, Indels: 5
0.79 0.09 0.12
Matches are distributed among these distances:
11 3 0.09
12 17 0.50
13 10 0.29
14 4 0.12
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (12 bp):
AATAATAATAAA
Found at i:112793 original size:113 final size:113
Alignment explanation
Indices: 112058--112776 Score: 1168
Period size: 113 Copynumber: 6.4 Consensus size: 113
112048 AAGTCGAACA
* * * * * *
112058 AGTTCTTCTCATTATGAACTTCCTCTGGAAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
* * * *
112123 GTTGAACAAATTCTTTTCATTATGAATTTCTTCTTTCTTCTTCAGATG
66 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
* * * ** * * *
112171 AGTTATTCTTATTATGAACTCTAACTGGCACTGCTGATCTACCGAGTAATGAATTTAAGCAAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
* *
112236 GTTGAACAAGTTCTTCTCATTATGAACTTTTTCTTTCTTCTTCAGATG
66 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
*
112284 AGTTCTTCTCATTATGAACTTTCTTTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
*
112349 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAAATG
66 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
*
112397 AGTTCTTCTCATTATGAACTTTCTCTTGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
112462 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
66 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
112510 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
*
112575 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATT
66 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
* * *
112623 AGTTCTTCTCTTTATGAACTTTCTCTGGAACTGCAGATCCACCAAGTGATGAATTTAAGCAAAAA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
112688 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
66 GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
* * *
112736 AGTTCTTCTCATTATGAACTTTCTTTGGAAATGTTGATCCA
1 AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCA
112777 TTGAATGATG
Statistics
Matches: 562, Mismatches: 44, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
113 562 1.00
ACGTcount: A:0.27, C:0.20, G:0.14, T:0.39
Consensus pattern (113 bp):
AGTTCTTCTCATTATGAACTTTCTCTGGAACTGCTGATCCACCGAGTGATGAATTTAAGCAAAAA
GTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATG
Found at i:113684 original size:114 final size:114
Alignment explanation
Indices: 113484--113822 Score: 579
Period size: 114 Copynumber: 3.0 Consensus size: 114
113474 ATGATCCTGC
* * ** *
113484 AATTCATCTTTCAATTCTAATGATTGGTTCTGGGGTTCCTACCGAACCAGATCAGATAACTCAAA
1 AATTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCAAACCAAACCAGATCAGATAACTCAAA
113549 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
66 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
113598 AATTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCAAACCAAACCAGATCAGATAACTCAAA
1 AATTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCAAACCAAACCAGATCAGATAACTCAAA
113663 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
66 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
* * * *
113712 AATTCATCTTGCAAATCTAATGATTGGTTTTGAGGTTCACACCAAAGCAGATCAGATAACTCAAA
1 AATTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCAAACCAAACCAGATCAGATAACTCAAA
* *
113777 GAACACTTCCAGAAGATGCTATTGGGCCTCCTTATTTCTACCATGA
66 GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGA
113823 TAACGTGGCA
Statistics
Matches: 214, Mismatches: 11, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
114 214 1.00
ACGTcount: A:0.31, C:0.21, G:0.16, T:0.31
Consensus pattern (114 bp):
AATTCATCTTTCAAATCTAATGATTGGTTTTGGGGTTCAAACCAAACCAGATCAGATAACTCAAA
GAACACTTCCAGAAGATGCTATTGGGTCTCCTTATTTCTACTATGAGCA
Found at i:114495 original size:9 final size:9
Alignment explanation
Indices: 114481--114537 Score: 60
Period size: 9 Copynumber: 6.3 Consensus size: 9
114471 TCTTGACCCC
114481 TTTTTTTCT
1 TTTTTTTCT
*
114490 TTTTTTCCT
1 TTTTTTTCT
*
114499 TTTTATTCT
1 TTTTTTTCT
* *
114508 TCTTCTTCT
1 TTTTTTTCT
*
114517 CTTTTTTCT
1 TTTTTTTCT
*
114526 TCTTTTTCT
1 TTTTTTTCT
114535 TTT
1 TTT
114538 CTTCTTTTCA
Statistics
Matches: 37, Mismatches: 11, Indels: 0
0.77 0.23 0.00
Matches are distributed among these distances:
9 37 1.00
ACGTcount: A:0.02, C:0.19, G:0.00, T:0.79
Consensus pattern (9 bp):
TTTTTTTCT
Found at i:114502 original size:18 final size:19
Alignment explanation
Indices: 114481--114555 Score: 64
Period size: 18 Copynumber: 3.9 Consensus size: 19
114471 TCTTGACCCC
114481 TTTTTTTCTTTTTTTC-CT
1 TTTTTTTCTTTTTTTCTCT
* *
114499 TTTTATTCTTCTTCTTCTCT
1 TTTTTTTCTT-TTTTTCTCT
*
114519 TTTTTCTTCTTTTTCTTTTC-
1 TTTTT-TTCTTTTT-TTCTCT
* *
114539 TTCTTTTCATTTTTTCT
1 TTTTTTTCTTTTTTTCT
114556 TCAAGCATAA
Statistics
Matches: 45, Mismatches: 8, Indels: 8
0.74 0.13 0.13
Matches are distributed among these distances:
18 12 0.27
19 12 0.27
20 12 0.27
21 9 0.20
ACGTcount: A:0.03, C:0.20, G:0.00, T:0.77
Consensus pattern (19 bp):
TTTTTTTCTTTTTTTCTCT
Found at i:114522 original size:21 final size:20
Alignment explanation
Indices: 114481--114557 Score: 63
Period size: 21 Copynumber: 3.9 Consensus size: 20
114471 TCTTGACCCC
*
114481 TTTTT-TTCTTTT-TT-TCC
1 TTTTTATTCTTTTCTTCTCT
114498 TTTTTATTCTTCTTCTTCTCT
1 TTTTTATTCTT-TTCTTCTCT
* *
114519 TTTTTCTTCTTTTTCTTTTCT
1 TTTTTATTC-TTTTCTTCTCT
114540 TCTTTTCATT-TTTTCTTC
1 T-TTTT-ATTCTTTTCTTC
114558 AAGCATAATA
Statistics
Matches: 48, Mismatches: 5, Indels: 10
0.76 0.08 0.16
Matches are distributed among these distances:
17 5 0.10
18 5 0.10
19 2 0.04
20 2 0.04
21 26 0.54
22 6 0.12
23 2 0.04
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (20 bp):
TTTTTATTCTTTTCTTCTCT
Found at i:114531 original size:29 final size:29
Alignment explanation
Indices: 114487--114557 Score: 81
Period size: 29 Copynumber: 2.4 Consensus size: 29
114477 CCCCTTTTTT
* *
114487 TCTTTTTT-TCCTTTTTATTCTTCTTCTTC
1 TCTTTTTTCTTCTTTTT-CTCTTCTTCTTC
* *
114516 TCTTTTTTCTTCTTTTTCTTTTCTTCTTT
1 TCTTTTTTCTTCTTTTTCTCTTCTTCTTC
114545 TCATTTTTTCTTC
1 TC-TTTTTTCTTC
114558 AAGCATAATA
Statistics
Matches: 36, Mismatches: 4, Indels: 3
0.84 0.09 0.07
Matches are distributed among these distances:
29 19 0.53
30 17 0.47
ACGTcount: A:0.03, C:0.23, G:0.00, T:0.75
Consensus pattern (29 bp):
TCTTTTTTCTTCTTTTTCTCTTCTTCTTC
Found at i:114555 original size:13 final size:13
Alignment explanation
Indices: 114480--114556 Score: 61
Period size: 13 Copynumber: 5.8 Consensus size: 13
114470 ATCTTGACCC
*
114480 CTTTTTTTCTTTT
1 CTTTTCTTCTTTT
* *
114493 -TTTCCTTTTTATT
1 CTTTTCTTCTT-TT
*
114506 CTTCTTCTTCTCTT
1 CTT-TTCTTCTTTT
114520 -TTTTCTTCTTTTT
1 CTTTTCTTC-TTTT
114533 CTTTTCTTCTTTT
1 CTTTTCTTCTTTT
114546 CATTTT-TTCTT
1 C-TTTTCTTCTT
114557 CAAGCATAAT
Statistics
Matches: 51, Mismatches: 7, Indels: 12
0.73 0.10 0.17
Matches are distributed among these distances:
12 13 0.25
13 17 0.33
14 16 0.31
15 5 0.10
ACGTcount: A:0.03, C:0.21, G:0.00, T:0.77
Consensus pattern (13 bp):
CTTTTCTTCTTTT
Found at i:121906 original size:15 final size:15
Alignment explanation
Indices: 121883--121914 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
121873 AGCAATGAAT
121883 AATGAATGTATGCAA
1 AATGAATGTATGCAA
*
121898 AATGCATGTATGCAA
1 AATGAATGTATGCAA
121913 AA
1 AA
121915 GGTATTGATC
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.47, C:0.09, G:0.19, T:0.25
Consensus pattern (15 bp):
AATGAATGTATGCAA
Found at i:127065 original size:3 final size:3
Alignment explanation
Indices: 127057--127105 Score: 62
Period size: 3 Copynumber: 15.7 Consensus size: 3
127047 GGCCTGTTTG
* *
127057 TAA TAA TAA TAA TAT TAA TAA TAA TAA AAA TATA TAA TAAA TAA TAA
1 TAA TAA TAA TAA TAA TAA TAA TAA TAA TAA TA-A TAA T-AA TAA TAA
127104 TA
1 TA
127106 TAAAAATCGG
Statistics
Matches: 40, Mismatches: 4, Indels: 4
0.83 0.08 0.08
Matches are distributed among these distances:
3 34 0.85
4 6 0.15
ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35
Consensus pattern (3 bp):
TAA
Found at i:127813 original size:107 final size:108
Alignment explanation
Indices: 127622--127932 Score: 529
Period size: 107 Copynumber: 2.9 Consensus size: 108
127612 CATAGTGACG
* *
127622 TCAGTAAACTCAACCAAACAGTCGAATCAAACAAATAAAACTTCTATATCATGTAAATGGTTGAA
1 TCAGTAAACTCAACCAAACTGTCGAATCAAGCAAATAAAACTT-TATATCATGTAAATGGTTGAA
*
127687 CCCAACCAATCAATGCACTCAATATATATATATATATATATATA
65 CCCAACCAATCAATCCACTCAATATATATATATATATATATATA
*
127731 TCAGTAAACTCAACCAAACTGTTGAATCAAGCAAATAAAACTTT-TATCATGTAAATGGTTGAAC
1 TCAGTAAACTCAACCAAACTGTCGAATCAAGCAAATAAAACTTTATATCATGTAAATGGTTGAAC
127795 CCAACCAATCAATCCACTC-A-ATATATATATATATATATATA
66 CCAACCAATCAATCCACTCAATATATATATATATATATATATA
* *
127836 TCAGCAAACTCAACCAAACTGTCGACTCAAGCAAATAAAACTTTTATATCATGTAAATGGTTGAA
1 TCAGTAAACTCAACCAAACTGTCGAATCAAGCAAATAAAAC-TTTATATCATGTAAATGGTTGAA
127901 CCCAACCAATCAATCCACTCAATATATATATA
65 CCCAACCAATCAATCCACTCAATATATATATA
127933 CACAACAATT
Statistics
Matches: 191, Mismatches: 7, Indels: 8
0.93 0.03 0.04
Matches are distributed among these distances:
105 59 0.31
106 4 0.02
107 77 0.40
108 2 0.01
109 49 0.26
ACGTcount: A:0.44, C:0.21, G:0.08, T:0.28
Consensus pattern (108 bp):
TCAGTAAACTCAACCAAACTGTCGAATCAAGCAAATAAAACTTTATATCATGTAAATGGTTGAAC
CCAACCAATCAATCCACTCAATATATATATATATATATATATA
Found at i:132833 original size:19 final size:16
Alignment explanation
Indices: 132794--132834 Score: 64
Period size: 16 Copynumber: 2.6 Consensus size: 16
132784 TATATATTTA
*
132794 TATGATGCGAAAGACT
1 TATGATGAGAAAGACT
132810 TATGATGAGAAAGACT
1 TATGATGAGAAAGACT
*
132826 TACGATGAG
1 TATGATGAG
132835 TTAATCTCGA
Statistics
Matches: 23, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
16 23 1.00
ACGTcount: A:0.39, C:0.10, G:0.27, T:0.24
Consensus pattern (16 bp):
TATGATGAGAAAGACT
Found at i:141459 original size:61 final size:61
Alignment explanation
Indices: 141356--141475 Score: 204
Period size: 61 Copynumber: 2.0 Consensus size: 61
141346 CGGATTAACT
* *
141356 CTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGACCTTATTTGTCATAGTA
1 CTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGAACTTATGTGTCATAGTA
* *
141417 CTAGTGTGTATACCCAAGACACTTAGTGCAGGTGGTGTGCACGAACTTATGTGTCATAG
1 CTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGAACTTATGTGTCATAG
141476 CATTACGATG
Statistics
Matches: 55, Mismatches: 4, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
61 55 1.00
ACGTcount: A:0.26, C:0.19, G:0.27, T:0.28
Consensus pattern (61 bp):
CTAGAGTGTATACCCAAGACACTTAGTGCAGGTGGTGGGCACGAACTTATGTGTCATAGTA
Found at i:143999 original size:216 final size:216
Alignment explanation
Indices: 143718--144432 Score: 1140
Period size: 216 Copynumber: 3.3 Consensus size: 216
143708 ATTTTATGAA
* * *
143718 AAATACAAATTTA-AGAATTAAATTGAACAAATATGAAATTTCAAATAAAAATTTAAATAAATTA
1 AAATA-AAATTTAGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTA
143782 AACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACA
65 AACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACA
* *
143847 AAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAATTAAGTAAAA
130 AAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATA
*
143912 AGTATGGATCAATTTCATATGC
195 AGTATGGGTCAATTTCATATGC
* *
143934 AAATAAAATTTGGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATTAATTAA
1 AAATAAAATTTAGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
*
143999 ACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGGTGTTGAAATTAATACAA
66 ACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAA
*
144064 AAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTTAAAAATAGAAATAAGTAATAA
131 AAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATAA
*
144129 GTATGGGTCAATTTCAGATGC
196 GTATGGGTCAATTTCATATGC
** * *
144150 AAA-AAACATTTAGAGGACTAAATTGAACAAATAAAAAATTACAAATAAAAAATTAAATAAACTA
1 AAATAAA-ATTTAGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTA
* *
144214 AACAACACA-A---A--AGGGATCAAATCGAAATAATTTTAAATTTTGAGGTTGAAATTAATACA
65 AACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACA
* * ** *
144273 AACATGTACTAAATTATACTTATTTAAAAAGTTATGGGCCAATTAATAAATAGAAATAAGTAATA
130 AAAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATA
144338 AGTATGGGTCAATTTCATATGC
195 AGTATGGGTCAATTTCATATGC
* *
144360 AAATAAAATGTAGAGGACTAAATTGAACAAATATGAAATGACAAATAAAAATTTAAATAAATTAA
1 AAATAAAATTTAGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
144425 ACAACACA
66 ACAACACA
144433 AAATGGATCA
Statistics
Matches: 463, Mismatches: 33, Indels: 12
0.91 0.06 0.02
Matches are distributed among these distances:
210 188 0.41
211 3 0.01
212 1 0.00
215 10 0.02
216 261 0.56
ACGTcount: A:0.51, C:0.09, G:0.12, T:0.28
Consensus pattern (216 bp):
AAATAAAATTTAGAGGACTAAATTGAACAAATATGAAATTACAAATAAAAATTTAAATAAATTAA
ACAACACACATTGATGAGGGATCAAATCGAAATAATTTTAAATTGTGATGTTGAAATTAATACAA
AAAAGTACTAAATTATACCCATTTAAAAAGTTATGGGCCAATTAAAAAATAGAAATAAGTAATAA
GTATGGGTCAATTTCATATGC
Found at i:144195 original size:14 final size:14
Alignment explanation
Indices: 144176--144204 Score: 58
Period size: 14 Copynumber: 2.1 Consensus size: 14
144166 ACTAAATTGA
144176 ACAAATAAAAAATT
1 ACAAATAAAAAATT
144190 ACAAATAAAAAATT
1 ACAAATAAAAAATT
144204 A
1 A
144205 AATAAACTAA
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 15 1.00
ACGTcount: A:0.72, C:0.07, G:0.00, T:0.21
Consensus pattern (14 bp):
ACAAATAAAAAATT
Found at i:144510 original size:20 final size:21
Alignment explanation
Indices: 144485--144644 Score: 143
Period size: 20 Copynumber: 7.7 Consensus size: 21
144475 GCATTCATTT
*
144485 TATATATATGTA-ATATAAAC
1 TATATATATATATATATAAAC
*
144505 TATATAGT-T-TATATATAAAG
1 TATATA-TATATATATATAAAC
*
144525 TATATGTATTATATATATAAAC
1 TATATATA-TATATATATAAAC
* *
144547 TATATAGTTTATATATATATA-
1 TATATA-TATATATATATAAAC
*
144568 TATATATATATATATATATA-
1 TATATATATATATATATAAAC
*
144588 TATATATATATTATGTATAAAC
1 TATATATATA-TATATATAAAC
** *
144610 TATATATA-CCATGTATAAAC
1 TATATATATATATATATAAAC
144630 TATATATACTATATA
1 TATATATA-TATATA
144645 GTTTATATAT
Statistics
Matches: 116, Mismatches: 14, Indels: 18
0.78 0.09 0.12
Matches are distributed among these distances:
19 3 0.03
20 60 0.52
21 16 0.14
22 36 0.31
23 1 0.01
ACGTcount: A:0.46, C:0.04, G:0.04, T:0.45
Consensus pattern (21 bp):
TATATATATATATATATAAAC
Found at i:144542 original size:22 final size:21
Alignment explanation
Indices: 144485--144752 Score: 118
Period size: 20 Copynumber: 12.7 Consensus size: 21
144475 GCATTCATTT
*
144485 TATATATATGTA-ATATA-AAC
1 TATATATAT-TATATATATAAA
*
144505 TATATAGT-TTATATATA-AAG
1 TATATA-TATTATATATATAAA
*
144525 TATATGTATTATATATATAAA
1 TATATATATTATATATATAAA
*
144546 CTATATAGT-TTATATATATATA
1 -TATATA-TATTATATATATAAA
*
144568 TATATATATATATATATATATA
1 TATATATAT-TATATATATAAA
* *
144590 TATATATATTATGTATA-AAC
1 TATATATATTATATATATAAA
** * *
144610 TATATATACCATGTATA-AAC
1 TATATATATTATATATATAAA
* * *
144630 TATATATACTATATAGTTTATA
1 TATATATATTATATA-TATAAA
144652 TATGA-ACTATTGA-ACTATATAGAA
1 TAT-ATA-TATT-ATA-TATATA-AA
*
144676 CCTACATAGT-TTATATATA-AAA
1 --TATATA-TATTATATATATAAA
*
144698 T-TATATA-TATATATAT-AT
1 TATATATATTATATATATAAA
144716 TATATATTATGTATA-ATTATAAA
1 TATATA-TAT-TATATA-TATAAA
*
144739 T-TATATATTGTATA
1 TATATATATTATATA
144753 ATTATATAGT
Statistics
Matches: 196, Mismatches: 24, Indels: 55
0.71 0.09 0.20
Matches are distributed among these distances:
18 11 0.06
19 10 0.05
20 67 0.34
21 23 0.12
22 56 0.29
23 12 0.06
24 9 0.05
25 4 0.02
26 4 0.02
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.45
Consensus pattern (21 bp):
TATATATATTATATATATAAA
Found at i:144672 original size:2 final size:2
Alignment explanation
Indices: 144485--144654 Score: 112
Period size: 2 Copynumber: 81.5 Consensus size: 2
144475 GCATTCATTT
* * * *
144485 TA TA TA TA TG TA -A TA TA AA CTA TA TA GTT TA TA TA TA AA GTA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA -TA
* * *
144527 TA TG TA T- TA TA TA TA TA AA CTA TA TA GTT TA TA TA TA TA TA TA
1 TA TA TA TA TA TA TA TA TA TA -TA TA TA -TA TA TA TA TA TA TA TA
* *
144570 TA TA TA TA TA TA TA TA TA TA TA TA TA TA T- TA TG TA TA AA CTA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA -TA
* * * *
144612 TA TA TA CCA TG TA TA AA CTA TA TA TA CTA TA TA GTT TA TA TA T
1 TA TA TA -TA TA TA TA TA -TA TA TA TA -TA TA TA -TA TA TA TA T
144655 GAACTATTGA
Statistics
Matches: 129, Mismatches: 26, Indels: 26
0.71 0.14 0.14
Matches are distributed among these distances:
1 3 0.02
2 115 0.89
3 11 0.09
ACGTcount: A:0.45, C:0.04, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:144721 original size:15 final size:15
Alignment explanation
Indices: 144701--144785 Score: 63
Period size: 15 Copynumber: 5.7 Consensus size: 15
144691 TATAAAATTA
144701 TATATATATATATAT
1 TATATATATATATAT
*
144716 TATATATTATGTATAAT
1 TATATA-TATATAT-AT
*
144733 TATAAAT-TATATAT
1 TATATATATATATAT
*
144747 TGTATA-ATTATATAGT
1 TATATATA-TATATA-T
144763 T-T-TATAT-TATAGT
1 TATATATATATATA-T
144776 TATATATATA
1 TATATATATA
144786 GTTTATGGGG
Statistics
Matches: 56, Mismatches: 5, Indels: 17
0.72 0.06 0.22
Matches are distributed among these distances:
13 7 0.12
14 10 0.18
15 23 0.41
16 9 0.16
17 7 0.12
ACGTcount: A:0.42, C:0.00, G:0.05, T:0.53
Consensus pattern (15 bp):
TATATATATATATAT
Found at i:144753 original size:22 final size:24
Alignment explanation
Indices: 144709--144772 Score: 78
Period size: 24 Copynumber: 2.7 Consensus size: 24
144699 TATATATATA
*
144709 TATATATTATATATTATGTATAAT
1 TATAAATTATATATTATGTATAAT
144733 TATAAATTATATA-T-TGTATAAT
1 TATAAATTATATATTATGTATAAT
* *
144755 TATATAGTTTTATATTAT
1 TATA-AATTATATATTAT
144773 AGTTATATAT
Statistics
Matches: 34, Mismatches: 3, Indels: 5
0.81 0.07 0.12
Matches are distributed among these distances:
22 12 0.35
23 8 0.24
24 13 0.38
25 1 0.03
ACGTcount: A:0.41, C:0.00, G:0.05, T:0.55
Consensus pattern (24 bp):
TATAAATTATATATTATGTATAAT
Found at i:144791 original size:13 final size:13
Alignment explanation
Indices: 144755--144791 Score: 51
Period size: 13 Copynumber: 2.9 Consensus size: 13
144745 ATTGTATAAT
144755 TATATAGTTT-TA
1 TATATAGTTTATA
144767 TATTATAG-TTATA
1 TA-TATAGTTTATA
144780 TATATAGTTTAT
1 TATATAGTTTAT
144792 GGGGTTTAGG
Statistics
Matches: 22, Mismatches: 0, Indels: 5
0.81 0.00 0.19
Matches are distributed among these distances:
12 9 0.41
13 13 0.59
ACGTcount: A:0.35, C:0.00, G:0.08, T:0.57
Consensus pattern (13 bp):
TATATAGTTTATA
Found at i:144805 original size:7 final size:7
Alignment explanation
Indices: 144793--144848 Score: 84
Period size: 7 Copynumber: 8.6 Consensus size: 7
144783 ATAGTTTATG
144793 GGGTTTA
1 GGGTTTA
144800 GGGTTTA
1 GGGTTTA
144807 GGGTTTA
1 GGGTTTA
144814 GGGTTTA
1 GGGTTTA
144821 GGGTTTA
1 GGGTTTA
144828 ---TTTA
1 GGGTTTA
144832 GGG-TTA
1 GGGTTTA
144838 GGGTTTA
1 GGGTTTA
144845 GGGT
1 GGGT
144849 GTATATTTAT
Statistics
Matches: 45, Mismatches: 0, Indels: 8
0.85 0.00 0.15
Matches are distributed among these distances:
4 4 0.09
6 6 0.13
7 35 0.78
ACGTcount: A:0.14, C:0.00, G:0.43, T:0.43
Consensus pattern (7 bp):
GGGTTTA
Found at i:144843 original size:24 final size:27
Alignment explanation
Indices: 144803--144857 Score: 89
Period size: 24 Copynumber: 2.1 Consensus size: 27
144793 GGGTTTAGGG
144803 TTTAGGGTTTAGGGTTTAGGGT-T-TA
1 TTTAGGGTTTAGGGTTTAGGGTGTATA
144828 TTTAGGG-TTAGGGTTTAGGGTGTATA
1 TTTAGGGTTTAGGGTTTAGGGTGTATA
144854 TTTA
1 TTTA
144858 TATTATATAA
Statistics
Matches: 28, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
24 14 0.50
25 8 0.29
26 6 0.21
ACGTcount: A:0.18, C:0.00, G:0.35, T:0.47
Consensus pattern (27 bp):
TTTAGGGTTTAGGGTTTAGGGTGTATA
Found at i:144930 original size:31 final size:30
Alignment explanation
Indices: 144875--144973 Score: 103
Period size: 29 Copynumber: 3.2 Consensus size: 30
144865 TAAACTACAT
*
144875 ACTATAATTTATATTTATATACTATTTATATAA
1 ACTATAGTTTATA-TT-TATACTA-TTATATAA
*
144908 ACTATAGTTTATATTTATACTA-TATATGA
1 ACTATAGTTTATATTTATACTATTATATAA
* *
144937 ACTATAGTTTACATATGA-ACTATATATATAA
1 ACTATAGTTTATAT-TTATACTAT-TATATAA
144968 ACTATA
1 ACTATA
144974 TAGTTTACAT
Statistics
Matches: 58, Mismatches: 5, Indels: 8
0.82 0.07 0.11
Matches are distributed among these distances:
29 23 0.40
30 2 0.03
31 19 0.33
32 2 0.03
33 12 0.21
ACGTcount: A:0.42, C:0.08, G:0.04, T:0.45
Consensus pattern (30 bp):
ACTATAGTTTATATTTATACTATTATATAA
Found at i:144962 original size:20 final size:20
Alignment explanation
Indices: 144931--145132 Score: 97
Period size: 20 Copynumber: 10.7 Consensus size: 20
144921 TTTATACTAT
144931 ATATGAAC--TATAGTTTAC
1 ATATGAACTATATAGTTTAC
144949 ATATGAACTATATA---T--
1 ATATGAACTATATAGTTTAC
144964 ATA--AACTATATAGTTTAC
1 ATATGAACTATATAGTTTAC
*
144982 ATAAGAACTATATA-TATATAC
1 ATATGAACTATATAGT-T-TAC
* *
145003 TCTAT-ATACTAAAGTTGATA-TTTAT
1 -ATATGA-ACT--A--T-ATAGTTTAC
145028 ATATGAAC--TATAGTTTAC
1 ATATGAACTATATAGTTTAC
* *
145046 ATATAAACTATATAGTTTAT
1 ATATGAACTATATAGTTTAC
145066 ATACT-AAC--TATAGTTTAC
1 ATA-TGAACTATATAGTTTAC
145084 ATATGAACTATATA---T--
1 ATATGAACTATATAGTTTAC
*
145099 ATATAAACTATATAGTTTAC
1 ATATGAACTATATAGTTTAC
*
145119 ATATGACCTATATA
1 ATATGAACTATATA
145133 TATATACTAT
Statistics
Matches: 142, Mismatches: 11, Indels: 60
0.67 0.05 0.28
Matches are distributed among these distances:
13 9 0.06
15 16 0.11
16 1 0.01
17 6 0.04
18 39 0.27
19 1 0.01
20 45 0.32
21 5 0.04
22 5 0.04
24 6 0.04
25 3 0.02
26 2 0.01
27 4 0.03
ACGTcount: A:0.43, C:0.10, G:0.07, T:0.40
Consensus pattern (20 bp):
ATATGAACTATATAGTTTAC
Found at i:144976 original size:33 final size:33
Alignment explanation
Indices: 144939--145143 Score: 186
Period size: 33 Copynumber: 6.1 Consensus size: 33
144929 ATATATGAAC
144939 TATAGTTTACATATGAACTATATATATAAACTA
1 TATAGTTTACATATGAACTATATATATAAACTA
* * *
144972 TATAGTTTACATAAGAACTATATATATATACTC
1 TATAGTTTACATATGAACTATATATATAAACTA
* * * *
145005 TATA-TACTAAAGT-TGATA-TTTATATATGAAC--
1 TATAGT-TTACA-TATGA-ACTATATATATAAACTA
* *
145036 TATAGTTTACATATAAACTATATAGTTTATATACTAA
1 TATAGTTTACATATGAACTATATA---TATAAACT-A
145073 CTATAGTTTACATATGAACTATATATATATAAACTA
1 -TATAGTTTACATATGAAC--TATATATATAAACTA
* *
145109 TATAGTTTACATATGACCTATATATATATACTA
1 TATAGTTTACATATGAACTATATATATAAACTA
145142 TA
1 TA
145144 GTTGATATTT
Statistics
Matches: 138, Mismatches: 19, Indels: 30
0.74 0.10 0.16
Matches are distributed among these distances:
30 2 0.01
31 14 0.10
32 2 0.01
33 65 0.47
34 7 0.05
35 17 0.12
36 1 0.01
37 7 0.05
38 17 0.12
40 6 0.04
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (33 bp):
TATAGTTTACATATGAACTATATATATAAACTA
Found at i:144993 original size:18 final size:18
Alignment explanation
Indices: 144935--144993 Score: 52
Period size: 18 Copynumber: 3.4 Consensus size: 18
144925 TACTATATAT
*
144935 GAACTATAGTTTACATAT
1 GAACTATAGTTTACATAA
* *
144953 GAACTATA-TATATA-AA
1 GAACTATAGTTTACATAA
**
144969 CTA-TATAGTTTACATAA
1 GAACTATAGTTTACATAA
144986 GAACTATA
1 GAACTATA
144994 TATATATACT
Statistics
Matches: 29, Mismatches: 9, Indels: 6
0.66 0.20 0.14
Matches are distributed among these distances:
15 4 0.14
16 6 0.21
17 7 0.24
18 12 0.41
ACGTcount: A:0.46, C:0.10, G:0.08, T:0.36
Consensus pattern (18 bp):
GAACTATAGTTTACATAA
Found at i:144994 original size:31 final size:29
Alignment explanation
Indices: 144901--144997 Score: 97
Period size: 29 Copynumber: 3.2 Consensus size: 29
144891 ATATACTATT
* * *
144901 TATATAAACTATAGTTTATATTTA-TACTA
1 TATATAAACTATAGTTTACA-TAAGAACTA
* *
144930 TATATGAACTATAGTTTACATATGAACTATA
1 TATATAAACTATAGTTTACATAAGAAC--TA
144961 TATATAAACTATATAGTTTACATAAGAACTA
1 TATATAAAC--TATAGTTTACATAAGAACTA
144992 TATATA
1 TATATA
144998 TATACTCTAT
Statistics
Matches: 56, Mismatches: 7, Indels: 8
0.79 0.10 0.11
Matches are distributed among these distances:
28 1 0.02
29 20 0.36
31 18 0.32
33 17 0.30
ACGTcount: A:0.44, C:0.08, G:0.06, T:0.41
Consensus pattern (29 bp):
TATATAAACTATAGTTTACATAAGAACTA
Found at i:145008 original size:35 final size:35
Alignment explanation
Indices: 144939--145140 Score: 149
Period size: 35 Copynumber: 5.9 Consensus size: 35
144929 ATATATGAAC
* *
144939 TATAGTTTACATATGAACTATATATATAAACT--A
1 TATAGTTTACATAAGAACTATATATATATACTCAA
144972 TATAGTTTACATAAGAACTATATATATATACTC--
1 TATAGTTTACATAAGAACTATATATATATACTCAA
** * *
145005 TATA---TAC-TAA-AGTTGATATTTATATA-TGAA
1 TATAGTTTACATAAGAACT-ATATATATATACTCAA
145035 CTATAGTTTACATATA-AACTATATAGTTTATATACT-AA
1 -TATAGTTTACATA-AGAACTATATA---TATATACTCAA
* ** *
145073 CTATAGTTTACATATGAACTATATATATATAAACTA
1 -TATAGTTTACATAAGAACTATATATATATACTCAA
* *
145109 TATAGTTTACATATGACCTATATATATATACT
1 TATAGTTTACATAAGAACTATATATATATACT
145141 ATAGTTGATA
Statistics
Matches: 137, Mismatches: 16, Indels: 30
0.75 0.09 0.16
Matches are distributed among these distances:
28 3 0.02
29 13 0.09
30 3 0.02
31 4 0.03
33 34 0.25
34 3 0.02
35 41 0.30
36 4 0.03
38 31 0.23
39 1 0.01
ACGTcount: A:0.43, C:0.10, G:0.06, T:0.41
Consensus pattern (35 bp):
TATAGTTTACATAAGAACTATATATATATACTCAA
Found at i:145044 original size:18 final size:18
Alignment explanation
Indices: 145023--145130 Score: 89
Period size: 18 Copynumber: 5.9 Consensus size: 18
145013 AAAGTTGATA
*
145023 TTTATATATGAACTATAG
1 TTTACATATGAACTATAG
*
145041 TTTACATATAAACTATATAG
1 TTTACATATGAAC--TATAG
*
145061 TTTATATACT-AACTATAG
1 TTTACATA-TGAACTATAG
145079 TTTACATATGAACTATA-
1 TTTACATATGAACTATAG
* *
145096 --TATATATAAACTATATAG
1 TTTACATATGAAC--TATAG
*
145114 TTTACATATGACCTATA
1 TTTACATATGAACTATA
145131 TATATATACT
Statistics
Matches: 72, Mismatches: 9, Indels: 18
0.73 0.09 0.18
Matches are distributed among these distances:
15 9 0.12
17 5 0.07
18 34 0.47
20 23 0.32
21 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (18 bp):
TTTACATATGAACTATAG
Found at i:145066 original size:38 final size:38
Alignment explanation
Indices: 145023--145132 Score: 138
Period size: 38 Copynumber: 3.0 Consensus size: 38
145013 AAAGTTGATA
145023 TTTATATA-TGAACTATAGTTTACATATAAACTATATAG
1 TTTATATACT-AACTATAGTTTACATATAAACTATATAG
*
145061 TTTATATACTAACTATAGTTTACATATGAACTATATA-
1 TTTATATACTAACTATAGTTTACATATAAACTATATAG
* * * *
145098 TATATAAACT-A-TATAGTTTACATATGACCTATATA
1 TTTATATACTAACTATAGTTTACATATAAACTATATA
145133 TATATACTAT
Statistics
Matches: 67, Mismatches: 4, Indels: 5
0.88 0.05 0.07
Matches are distributed among these distances:
35 23 0.34
36 1 0.01
37 8 0.12
38 34 0.51
39 1 0.01
ACGTcount: A:0.42, C:0.10, G:0.06, T:0.42
Consensus pattern (38 bp):
TTTATATACTAACTATAGTTTACATATAAACTATATAG
Found at i:145130 original size:53 final size:52
Alignment explanation
Indices: 145020--145309 Score: 168
Period size: 53 Copynumber: 5.5 Consensus size: 52
145010 ACTAAAGTTG
* * *
145020 ATATTTATATATGAACTATAGTTTACATATAAACTATATAGTTTATATACT-AACT
1 ATATTTATATATGAACTATA---TATATATAAACTATATAGTTTACATA-TGACCT
*
145075 ATAGTTTACATATGAACTATATATATATAAACTATATAGTTTACATATGACCT
1 ATA-TTTATATATGAACTATATATATATAAACTATATAGTTTACATATGACCT
* * * * *
145128 ATATATATATACT-ATAGT-TGATATTTATATACTATATAGTTTACATATGACAT
1 ATATTTATATA-TGA-ACTAT-ATATATATAAACTATATAGTTTACATATGACCT
* * * * * *
145181 ATATATATATATGCTATAGCT-TATATTTATATACTATATA-TTATATATATAAACT
1 ATATTTATATATG--A-A-CTATATATATATAAACTATATAGTT-TACATATGACCT
* * * * * *
145236 ATATATACTATATAGTA-TAATTTACATATGAACTATATAGTTT--ATAT-ATCT
1 ATATTTA-TATAT-GAACT-ATATATATATAAACTATATAGTTTACATATGACCT
*
145287 ATA-TTATATATAAACTATATATA
1 ATATTTATATATGAACTATATATA
145310 CCATGTATAA
Statistics
Matches: 192, Mismatches: 27, Indels: 39
0.74 0.10 0.15
Matches are distributed among these distances:
48 6 0.03
49 6 0.03
50 2 0.01
51 6 0.03
52 15 0.08
53 74 0.39
54 18 0.09
55 41 0.21
56 23 0.12
57 1 0.01
ACGTcount: A:0.42, C:0.08, G:0.06, T:0.44
Consensus pattern (52 bp):
ATATTTATATATGAACTATATATATATAAACTATATAGTTTACATATGACCT
Found at i:145134 original size:2 final size:2
Alignment explanation
Indices: 145127--145309 Score: 63
Period size: 2 Copynumber: 87.0 Consensus size: 2
145117 ACATATGACC
* *
145127 TA TA TA TA TA TA CTA TA GT- TGA TA TT TA TA TA CTA TA TA GTT TA
1 TA TA TA TA TA TA -TA TA -TA T-A TA TA TA TA TA -TA TA TA -TA TA
* * * ** *
145171 CA TA TGA CA TA TA TA TA TA TA TGC TA TA GC T- TA TA TT TA TA TA
1 TA TA T-A TA TA TA TA TA TA TA T-A TA TA TA TA TA TA TA TA TA TA
*
145214 CTA TA TA T- TA TA TA TA TA AA CTA TA TA TA CTA TA TA GTA TA -A
1 -TA TA TA TA TA TA TA TA TA TA -TA TA TA TA -TA TA TA -TA TA TA
* * * *
145256 TT TA CA TA TGA -A CTA TA TA GTT TA TA TA TC TA TA T- TA TA TA
1 TA TA TA TA T-A TA -TA TA TA -TA TA TA TA TA TA TA TA TA TA TA
*
145297 TA AA CTA TA TA TA
1 TA TA -TA TA TA TA
145310 CCATGTATAA
Statistics
Matches: 133, Mismatches: 27, Indels: 42
0.66 0.13 0.21
Matches are distributed among these distances:
1 6 0.05
2 107 0.80
3 20 0.15
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (2 bp):
TA
Found at i:145151 original size:20 final size:18
Alignment explanation
Indices: 145127--145306 Score: 96
Period size: 20 Copynumber: 10.0 Consensus size: 18
145117 ACATATGACC
145127 TATATATATATACTATAGT
1 TATATATATATACTATA-T
*
145146 TGATATTTATATACTATA-
1 T-ATATATATATACTATAT
* *
145164 TAGTTTACATATGAC-ATA-
1 TA-TATATATAT-ACTATAT
*
145182 TATATATATATGCTATAGCT
1 TATATATATATACTATA--T
*
145202 TATATTTATATACTATATAT
1 TATATATATATAC--TATAT
*
145222 TATATATATAAACTATA-
1 TATATATATATACTATAT
145239 TATACTATATAGTA-TA-AT
1 TATA-TATATA-TACTATAT
*
145257 T-TACATATGA-ACTATA-
1 TATATATAT-ATACTATAT
*
145273 TAGTTTATATAT-CTATAT
1 TA-TATATATATACTATAT
145291 TATATATA-A-ACTATAT
1 TATATATATATACTATAT
145307 ATACCATGTA
Statistics
Matches: 125, Mismatches: 16, Indels: 43
0.68 0.09 0.23
Matches are distributed among these distances:
15 1 0.01
16 15 0.12
17 31 0.25
18 32 0.26
19 4 0.03
20 38 0.30
22 4 0.03
ACGTcount: A:0.42, C:0.07, G:0.05, T:0.46
Consensus pattern (18 bp):
TATATATATATACTATAT
Found at i:145309 original size:20 final size:20
Alignment explanation
Indices: 145286--145335 Score: 66
Period size: 20 Copynumber: 2.5 Consensus size: 20
145276 TTTATATATC
*
145286 TATATTATATATAAACTATA
1 TATACTATATATAAACTATA
* *
145306 TATACCATGTATAAACTATA
1 TATACTATATATAAACTATA
145326 -ATACTATATA
1 TATACTATATA
145336 GTTTATATAT
Statistics
Matches: 25, Mismatches: 5, Indels: 1
0.81 0.16 0.03
Matches are distributed among these distances:
19 8 0.32
20 17 0.68
ACGTcount: A:0.48, C:0.10, G:0.02, T:0.40
Consensus pattern (20 bp):
TATACTATATATAAACTATA
Found at i:145454 original size:24 final size:25
Alignment explanation
Indices: 145427--145483 Score: 71
Period size: 24 Copynumber: 2.3 Consensus size: 25
145417 CATATTACAT
* *
145427 ATTATATATTATGTATAATGTAT-A
1 ATTATATATAATATATAATGTATAA
* *
145451 ATTATAAATAATATATATTGTATAA
1 ATTATATATAATATATAATGTATAA
145476 ATTATATA
1 ATTATATA
145484 GTTTATTAAT
Statistics
Matches: 27, Mismatches: 5, Indels: 1
0.82 0.15 0.03
Matches are distributed among these distances:
24 19 0.70
25 8 0.30
ACGTcount: A:0.47, C:0.00, G:0.05, T:0.47
Consensus pattern (25 bp):
ATTATATATAATATATAATGTATAA
Found at i:145461 original size:17 final size:18
Alignment explanation
Indices: 145441--145483 Score: 52
Period size: 18 Copynumber: 2.4 Consensus size: 18
145431 TATATTATGT
*
145441 ATAATGTATAAT-TATAA
1 ATAATATATAATGTATAA
*
145458 ATAATATATATTGTATAA
1 ATAATATATAATGTATAA
*
145476 ATTATATA
1 ATAATATA
145484 GTTTATTAAT
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
17 10 0.45
18 12 0.55
ACGTcount: A:0.51, C:0.00, G:0.05, T:0.44
Consensus pattern (18 bp):
ATAATATATAATGTATAA
Found at i:145527 original size:22 final size:22
Alignment explanation
Indices: 145471--145520 Score: 64
Period size: 22 Copynumber: 2.2 Consensus size: 22
145461 ATATATATTG
* *
145471 TATAAATTATATAGTTTATTAA
1 TATAAACTATATAGTGTATTAA
145493 TATAAACTATATAGTGTATATATA
1 TATAAACTATATAGTGTAT-TA-A
145517 TATA
1 TATA
145521 GTATATATGG
Statistics
Matches: 24, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
22 17 0.71
23 2 0.08
24 5 0.21
ACGTcount: A:0.46, C:0.02, G:0.06, T:0.46
Consensus pattern (22 bp):
TATAAACTATATAGTGTATTAA
Found at i:145576 original size:7 final size:7
Alignment explanation
Indices: 145564--145624 Score: 61
Period size: 7 Copynumber: 8.7 Consensus size: 7
145554 TAGTAGGTTA
145564 GTTTAGG
1 GTTTAGG
145571 GTTTAGG
1 GTTTAGG
145578 GTTTAGG
1 GTTTAGG
* *
145585 GATTATG
1 GTTTAGG
* *
145592 ATTTAGTA
1 GTTTAG-G
*
145600 GATT-GG
1 GTTTAGG
145606 GTTTAGG
1 GTTTAGG
145613 GTTTAGG
1 GTTTAGG
145620 GTTTA
1 GTTTA
145625 TATTTATATT
Statistics
Matches: 42, Mismatches: 10, Indels: 4
0.75 0.18 0.07
Matches are distributed among these distances:
6 3 0.07
7 37 0.88
8 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.36, T:0.44
Consensus pattern (7 bp):
GTTTAGG
Found at i:145586 original size:41 final size:42
Alignment explanation
Indices: 145529--145624 Score: 158
Period size: 41 Copynumber: 2.3 Consensus size: 42
145519 TAGTATATAT
*
145529 GGTTTAGGGTTTAGGGATCATGATTTAGTAGGTT-AGTTTAG
1 GGTTTAGGGTTTAGGGATCATGATTTAGTAGATTGAGTTTAG
* *
145570 GGTTTAGGGTTTAGGGATTATGATTTAGTAGATTGGGTTTAG
1 GGTTTAGGGTTTAGGGATCATGATTTAGTAGATTGAGTTTAG
145612 GGTTTAGGGTTTA
1 GGTTTAGGGTTTA
145625 TATTTATATT
Statistics
Matches: 51, Mismatches: 3, Indels: 1
0.93 0.05 0.02
Matches are distributed among these distances:
41 32 0.63
42 19 0.37
ACGTcount: A:0.21, C:0.01, G:0.35, T:0.43
Consensus pattern (42 bp):
GGTTTAGGGTTTAGGGATCATGATTTAGTAGATTGAGTTTAG
Found at i:145683 original size:12 final size:13
Alignment explanation
Indices: 145658--145707 Score: 59
Period size: 13 Copynumber: 3.8 Consensus size: 13
145648 TACTATAATT
145658 TATATTTATATAC
1 TATATTTATATAC
145671 TATATTT-TATAC
1 TATATTTATATAC
*
145683 TAT-TTATATAAAC
1 TATATT-TATATAC
145696 TATAGTTTATAT
1 TATA-TTTATAT
145708 TTATATACTA
Statistics
Matches: 31, Mismatches: 2, Indels: 7
0.77 0.05 0.17
Matches are distributed among these distances:
11 2 0.06
12 9 0.29
13 14 0.45
14 4 0.13
15 2 0.06
ACGTcount: A:0.38, C:0.06, G:0.02, T:0.54
Consensus pattern (13 bp):
TATATTTATATAC
Found at i:145697 original size:52 final size:48
Alignment explanation
Indices: 145631--145761 Score: 147
Period size: 43 Copynumber: 2.9 Consensus size: 48
145621 TTTATATTTA
145631 TATTTATATAAACTACATACTATAATTTATATTTATATACTATATTTTATAC
1 TATTTATATAAACTA-A-ACTATAATTTATATTTATATAC--TATTTTATAC
*
145683 TA-TT-TAT--A-TAAACTATAGTTTATATTTATATACTATTTTATAC
1 TATTTATATAAACTAAACTATAATTTATATTTATATACTATTTTATAC
145726 TA-TT-TAT--A-TAAACTATAATTTATATTTATATACTAT
1 TATTTATATAAACTAAACTATAATTTATATTTATATACTAT
145762 ATATATGAAC
Statistics
Matches: 77, Mismatches: 2, Indels: 9
0.88 0.02 0.10
Matches are distributed among these distances:
43 45 0.58
45 21 0.27
46 1 0.01
47 2 0.03
48 1 0.01
50 3 0.04
51 2 0.03
52 2 0.03
ACGTcount: A:0.40, C:0.08, G:0.01, T:0.52
Consensus pattern (48 bp):
TATTTATATAAACTAAACTATAATTTATATTTATATACTATTTTATAC
Found at i:145698 original size:25 final size:23
Alignment explanation
Indices: 145660--145763 Score: 98
Period size: 22 Copynumber: 4.7 Consensus size: 23
145650 CTATAATTTA
145660 TATTTATATACTATATTTTATAC
1 TATTTATATACTATATTTTATAC
*
145683 TATTTATATAAACTATA-GTT-TA-
1 TATTTATAT--ACTATATTTTATAC
145705 TATTTATATAC--TATTTTATAC
1 TATTTATATACTATATTTTATAC
*
145726 TATTTATATAAACTATA-ATT-TA-
1 TATTTATAT--ACTATATTTTATAC
145748 TATTTATATACTATAT
1 TATTTATATACTATAT
145764 ATATGAACTA
Statistics
Matches: 68, Mismatches: 3, Indels: 22
0.73 0.03 0.24
Matches are distributed among these distances:
18 2 0.03
19 2 0.03
20 10 0.15
21 9 0.13
22 18 0.26
23 15 0.22
24 4 0.06
25 8 0.12
ACGTcount: A:0.38, C:0.07, G:0.01, T:0.54
Consensus pattern (23 bp):
TATTTATATACTATATTTTATAC
Found at i:145705 original size:45 final size:45
Alignment explanation
Indices: 145649--145763 Score: 207
Period size: 43 Copynumber: 2.6 Consensus size: 45
145639 TAAACTACAT
145649 ACTATAATTTATATTTATATACTATATTTTATACTATTTATATAA
1 ACTATAATTTATATTTATATACTATATTTTATACTATTTATATAA
*
145694 ACTATAGTTTATATTTATATAC--TATTTTATACTATTTATATAA
1 ACTATAATTTATATTTATATACTATATTTTATACTATTTATATAA
145737 ACTATAATTTATATTTATATACTATAT
1 ACTATAATTTATATTTATATACTATAT
145764 ATATGAACTA
Statistics
Matches: 66, Mismatches: 2, Indels: 4
0.92 0.03 0.06
Matches are distributed among these distances:
43 42 0.64
45 24 0.36
ACGTcount: A:0.39, C:0.07, G:0.01, T:0.53
Consensus pattern (45 bp):
ACTATAATTTATATTTATATACTATATTTTATACTATTTATATAA
Found at i:145761 original size:33 final size:33
Alignment explanation
Indices: 145716--145806 Score: 109
Period size: 33 Copynumber: 2.8 Consensus size: 33
145706 ATTTATATAC
*
145716 TATTT-TATACTATTTATATAAACTATAATTTA
1 TATTTATATACTATATATATAAACTATAATTTA
* *
145748 TATTTATATACTATATATATGAACTATAGTTTA
1 TATTTATATACTATATATATAAACTATAATTTA
*
145781 CA--TATGA-ACTATATATATAAACTATA
1 TATTTAT-ATACTATATATATAAACTATA
145807 TAAACTATAT
Statistics
Matches: 52, Mismatches: 5, Indels: 5
0.84 0.08 0.08
Matches are distributed among these distances:
31 21 0.40
32 6 0.12
33 25 0.48
ACGTcount: A:0.43, C:0.08, G:0.03, T:0.46
Consensus pattern (33 bp):
TATTTATATACTATATATATAAACTATAATTTA
Found at i:145773 original size:13 final size:13
Alignment explanation
Indices: 145757--145808 Score: 50
Period size: 13 Copynumber: 3.6 Consensus size: 13
145747 ATATTTATAT
145757 ACTATATATATGA
1 ACTATATATATGA
145770 ACTATAGTTTACATATGA
1 ACTATA---T--ATATGA
*
145788 ACTATATATATAA
1 ACTATATATATGA
145801 ACTATATA
1 ACTATATA
145809 AACTATATAG
Statistics
Matches: 33, Mismatches: 1, Indels: 10
0.75 0.02 0.23
Matches are distributed among these distances:
13 19 0.58
15 1 0.03
16 1 0.03
18 12 0.36
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (13 bp):
ACTATATATATGA
Found at i:145797 original size:22 final size:22
Alignment explanation
Indices: 145772--145839 Score: 70
Period size: 22 Copynumber: 3.2 Consensus size: 22
145762 ATATATGAAC
145772 TATAGTTTACATATGAACTATA
1 TATAGTTTACATATGAACTATA
** *
145794 TATA-TAAACTATATAAAC--TA
1 TATAGTTTAC-ATATGAACTATA
*
145814 TATAGTTTACATACGAACTATA
1 TATAGTTTACATATGAACTATA
145836 TATA
1 TATA
145840 TACTAAAGTT
Statistics
Matches: 35, Mismatches: 7, Indels: 8
0.70 0.14 0.16
Matches are distributed among these distances:
20 12 0.34
21 6 0.17
22 17 0.49
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (22 bp):
TATAGTTTACATATGAACTATA
Found at i:145807 original size:42 final size:41
Alignment explanation
Indices: 145763--145841 Score: 124
Period size: 42 Copynumber: 1.9 Consensus size: 41
145753 ATATACTATA
* *
145763 TATATGAAC-TATAGTTTACATATGAACTATATATATAAAC
1 TATATAAACATATAGTTTACATACGAACTATATATATAAAC
145803 TATATAAACTATATAGTTTACATACGAACTATATATATA
1 TATATAAAC-ATATAGTTTACATACGAACTATATATATA
145842 CTAAAGTTGA
Statistics
Matches: 35, Mismatches: 2, Indels: 2
0.90 0.05 0.05
Matches are distributed among these distances:
40 8 0.23
42 27 0.77
ACGTcount: A:0.46, C:0.10, G:0.06, T:0.38
Consensus pattern (41 bp):
TATATAAACATATAGTTTACATACGAACTATATATATAAAC
Found at i:145888 original size:18 final size:18
Alignment explanation
Indices: 145764--145882 Score: 61
Period size: 18 Copynumber: 6.3 Consensus size: 18
145754 TATACTATAT
145764 ATATGAACTATAGTTTAC
1 ATATGAACTATAGTTTAC
145782 ATATGAACTATA-TATATAAAC
1 ATATGAACTATAGT-T-T--AC
*
145803 TATATAAACTATATAGTTTAC
1 -ATATGAAC--TATAGTTTAC
*
145824 ATACGAACTATA-TATATAC
1 ATATGAACTATAGT-T-TAC
* *
145843 -TA--AAGTTGATA-TTTAT
1 ATATGAA-CT-ATAGTTTAC
145859 ATATGAACTATAGTTTAC
1 ATATGAACTATAGTTTAC
145877 ATATGA
1 ATATGA
145883 CTTATATATA
Statistics
Matches: 78, Mismatches: 7, Indels: 32
0.67 0.06 0.27
Matches are distributed among these distances:
16 4 0.05
17 9 0.12
18 35 0.45
19 6 0.08
20 6 0.08
21 4 0.05
22 7 0.09
23 1 0.01
24 5 0.06
25 1 0.01
ACGTcount: A:0.44, C:0.09, G:0.08, T:0.39
Consensus pattern (18 bp):
ATATGAACTATAGTTTAC
Found at i:147312 original size:2 final size:2
Alignment explanation
Indices: 147305--147336 Score: 64
Period size: 2 Copynumber: 16.0 Consensus size: 2
147295 ATTGTTGTTA
147305 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
147337 TGGTTTATTG
Statistics
Matches: 30, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 30 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:149546 original size:23 final size:22
Alignment explanation
Indices: 149500--149546 Score: 58
Period size: 23 Copynumber: 2.1 Consensus size: 22
149490 GTATGCTTTC
* * *
149500 TTAATGCAGGATGCTTGCTTAA
1 TTAATGCACGATACTTGCTAAA
149522 TTAATGCAACGATACTTGCTAAA
1 TTAATGC-ACGATACTTGCTAAA
149545 TT
1 TT
149547 GGTACATTGA
Statistics
Matches: 21, Mismatches: 3, Indels: 1
0.84 0.12 0.04
Matches are distributed among these distances:
22 7 0.33
23 14 0.67
ACGTcount: A:0.32, C:0.15, G:0.17, T:0.36
Consensus pattern (22 bp):
TTAATGCACGATACTTGCTAAA
Found at i:150078 original size:15 final size:15
Alignment explanation
Indices: 150058--150099 Score: 57
Period size: 15 Copynumber: 2.8 Consensus size: 15
150048 TAACTTAATT
*
150058 AATAAAATTTATTAA
1 AATAAAATTTAATAA
150073 AATAAAATTTAATAA
1 AATAAAATTTAATAA
* *
150088 GATAATATTTAA
1 AATAAAATTTAA
150100 ATTTAATTTA
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
15 24 1.00
ACGTcount: A:0.60, C:0.00, G:0.02, T:0.38
Consensus pattern (15 bp):
AATAAAATTTAATAA
Found at i:150459 original size:16 final size:16
Alignment explanation
Indices: 150440--150478 Score: 60
Period size: 16 Copynumber: 2.4 Consensus size: 16
150430 TGAGTCAATT
*
150440 ACAGGTCAGGTTCATA
1 ACAGGTCAGGTTCAAA
*
150456 ACAGGTCAGGTTGAAA
1 ACAGGTCAGGTTCAAA
150472 ACAGGTC
1 ACAGGTC
150479 GGGTAATACC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
16 21 1.00
ACGTcount: A:0.33, C:0.18, G:0.28, T:0.21
Consensus pattern (16 bp):
ACAGGTCAGGTTCAAA
Found at i:151037 original size:24 final size:24
Alignment explanation
Indices: 150976--151037 Score: 70
Period size: 25 Copynumber: 2.5 Consensus size: 24
150966 AGATAAATAT
* * *
150976 TATTTTTTTAATATAGTTTTAAAA
1 TATTTTTTTATTATAATGTTAAAA
* *
151000 TCTATTTTTAATTATAATGTTAAAA
1 TAT-TTTTTTATTATAATGTTAAAA
151025 TATTTTTTTATTA
1 TATTTTTTTATTA
151038 ATATGGGGTA
Statistics
Matches: 30, Mismatches: 7, Indels: 2
0.77 0.18 0.05
Matches are distributed among these distances:
24 11 0.37
25 19 0.63
ACGTcount: A:0.35, C:0.02, G:0.03, T:0.60
Consensus pattern (24 bp):
TATTTTTTTATTATAATGTTAAAA
Found at i:151814 original size:17 final size:16
Alignment explanation
Indices: 151787--151818 Score: 55
Period size: 17 Copynumber: 1.9 Consensus size: 16
151777 TAATAATAAT
151787 TATTATTATTAATATA
1 TATTATTATTAATATA
151803 TATTATTTATTAATAT
1 TATTA-TTATTAATAT
151819 TACAAAACCC
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
16 5 0.33
17 10 0.67
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (16 bp):
TATTATTATTAATATA
Found at i:153931 original size:23 final size:21
Alignment explanation
Indices: 153903--153957 Score: 74
Period size: 21 Copynumber: 2.5 Consensus size: 21
153893 TAATTTTTAA
*
153903 TTATTTTCTTTCAAATTATTTTT
1 TTATTTTATTT-AAA-TATTTTT
*
153926 TTATTTTATTTAGATATTTTT
1 TTATTTTATTTAAATATTTTT
153947 TTATTTTATTT
1 TTATTTTATTT
153958 TTCTGTTTGT
Statistics
Matches: 30, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
21 18 0.60
22 2 0.07
23 10 0.33
ACGTcount: A:0.22, C:0.04, G:0.02, T:0.73
Consensus pattern (21 bp):
TTATTTTATTTAAATATTTTT
Found at i:157230 original size:15 final size:15
Alignment explanation
Indices: 157210--157241 Score: 55
Period size: 15 Copynumber: 2.1 Consensus size: 15
157200 ATCAATACCT
157210 TTTTGCATACATGCA
1 TTTTGCATACATGCA
*
157225 TTTTGCATACATTCA
1 TTTTGCATACATGCA
157240 TT
1 TT
157242 ATTCATTTCA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.25, C:0.19, G:0.09, T:0.47
Consensus pattern (15 bp):
TTTTGCATACATGCA
Found at i:164556 original size:1 final size:1
Alignment explanation
Indices: 164546--164621 Score: 80
Period size: 1 Copynumber: 76.0 Consensus size: 1
164536 TGAAGAGAAG
* * * * * * *
164546 AAAAAGAAAAAAAAAAAAAAAAAAAAAGAAAAAAAAGAAGAAAAAGAAAAAAAAGAAAAAAAAGA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
*
164611 AAAGAAAAAAA
1 AAAAAAAAAAA
164622 GAGGGTCAAG
Statistics
Matches: 59, Mismatches: 16, Indels: 0
0.79 0.21 0.00
Matches are distributed among these distances:
1 59 1.00
ACGTcount: A:0.89, C:0.00, G:0.11, T:0.00
Consensus pattern (1 bp):
A
Found at i:164558 original size:9 final size:9
Alignment explanation
Indices: 164543--164618 Score: 107
Period size: 9 Copynumber: 8.2 Consensus size: 9
164533 GCTTGAAGAG
164543 AAGAAAAAGA
1 AAGAAAAA-A
*
164553 AAAAAAAAA
1 AAGAAAAAA
*
164562 AAAAAAAAA
1 AAGAAAAAA
164571 AAGAAAAAA
1 AAGAAAAAA
*
164580 AAGAAGAAA
1 AAGAAAAAA
164589 AAGAAAAAA
1 AAGAAAAAA
164598 AAGAAAAAA
1 AAGAAAAAA
164607 AAGAAAAGAA
1 AAGAAAA-AA
164617 AA
1 AA
164619 AAAGAGGGTC
Statistics
Matches: 61, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
9 50 0.82
10 11 0.18
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (9 bp):
AAGAAAAAA
Found at i:164595 original size:40 final size:41
Alignment explanation
Indices: 164541--164621 Score: 146
Period size: 41 Copynumber: 2.0 Consensus size: 41
164531 ATGCTTGAAG
164541 AGAAGAAAAAGAAAAAAAA-AAAAAAAAAAAAAGAAAAAAA
1 AGAAGAAAAAGAAAAAAAAGAAAAAAAAAAAAAGAAAAAAA
*
164581 AGAAGAAAAAGAAAAAAAAGAAAAAAAAGAAAAGAAAAAAA
1 AGAAGAAAAAGAAAAAAAAGAAAAAAAAAAAAAGAAAAAAA
164622 GAGGGTCAAG
Statistics
Matches: 39, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
40 19 0.49
41 20 0.51
ACGTcount: A:0.88, C:0.00, G:0.12, T:0.00
Consensus pattern (41 bp):
AGAAGAAAAAGAAAAAAAAGAAAAAAAAAAAAAGAAAAAAA
Found at i:164961 original size:16 final size:16
Alignment explanation
Indices: 164940--164976 Score: 58
Period size: 16 Copynumber: 2.3 Consensus size: 16
164930 CAATTCTATC
164940 TATTTAA-AGTTCAATT
1 TATTTAAGA-TTCAATT
164956 TATTTAAGATTCAATT
1 TATTTAAGATTCAATT
164972 TATTT
1 TATTT
164977 TCGAAAATTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
16 19 0.95
17 1 0.05
ACGTcount: A:0.35, C:0.05, G:0.05, T:0.54
Consensus pattern (16 bp):
TATTTAAGATTCAATT
Found at i:166192 original size:83 final size:83
Alignment explanation
Indices: 165985--166377 Score: 581
Period size: 83 Copynumber: 4.6 Consensus size: 83
165975 AACAAATGCC
* * *
165985 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGTAGAACCAGTC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
*
166050 ATT-AATTTTGAAGAGGA
66 ATTGAATTTGGAAGAGGA
*
166067 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
166132 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGGA
* *
166150 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
166215 ATTGAATTTGGAAGAGGA
66 ATTGAATTTGGAAGAGGA
166233 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTATGAACCACA
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGG--T-----A-A
*
166298 GAACCAATTATTGAATTTGGAAGAGGA
58 -AACCAATCATTGAATTTGGAAGAGGA
* * * * *
166325 ATGTGCTAATAGCATCTTATGGAAGTGTTCTTTGAGTTCTCTAATTTGGTTTG
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTG
166378 ATATAAAACC
Statistics
Matches: 287, Mismatches: 14, Indels: 10
0.92 0.05 0.03
Matches are distributed among these distances:
82 64 0.22
83 148 0.52
85 1 0.00
90 1 0.00
91 1 0.00
92 72 0.25
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (83 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTGGTAAAACCAATC
ATTGAATTTGGAAGAGGA
Found at i:166269 original size:166 final size:169
Alignment explanation
Indices: 165985--166377 Score: 596
Period size: 175 Copynumber: 2.3 Consensus size: 169
165975 AACAAATGCC
* * * *
165985 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAGTAGAACCAGTC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTAAAACCAATC
*
166050 ATTAATTTTGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
66 ATTAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
*
166115 GTTTGG-T-A-A-AATCAATCATTGAATTTGGAAGAGGA
131 GTTTGGATAACAGAACCAATCATTGAATTTGGAAGAGGA
*
166150 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTAAAATCAATC
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTAAAACCAATC
166215 ATTGAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
66 ATT-AATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCT
*
166280 GGTTTGGTATGAACCACAGAACCAATTATTGAATTTGGAAGAGGA
130 GGTTTGG-AT--A--ACAGAACCAATCATTGAATTTGGAAGAGGA
* * * *
166325 ATGTGCTAATAGCATCTTATGGAAGTGTTCTTTGAGTTCTCTAATTTGGTTTG
1 ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTG
166378 ATATAAAACC
Statistics
Matches: 206, Mismatches: 12, Indels: 10
0.90 0.05 0.04
Matches are distributed among these distances:
165 63 0.31
166 67 0.33
168 1 0.00
173 1 0.00
174 1 0.00
175 73 0.35
ACGTcount: A:0.26, C:0.12, G:0.24, T:0.38
Consensus pattern (169 bp):
ATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATTTGGTTTGGTAAAACCAATC
ATTAATTTGGAAGAGGAATGTGCTCATAGCATCTTCTGGAAGTGTTCTTTGAGTTATCTGATCTG
GTTTGGATAACAGAACCAATCATTGAATTTGGAAGAGGA
Found at i:166867 original size:95 final size:95
Alignment explanation
Indices: 166704--166903 Score: 364
Period size: 95 Copynumber: 2.1 Consensus size: 95
166694 TATTCTCCTC
**
166704 ATCAGAATCAGAATTCAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
1 ATCAGAATCAGAAAACAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
*
166769 AAAGGTCACTTCATAATCAGATTAGTTGTT
66 AAAGGTCACTTCATAATCAGATGAGTTGTT
*
166799 ATCAGAATCAGAAAACAAGATTTCTCGGTATTAAAAGAACTATCTATATCTGTGAAATCATCTTG
1 ATCAGAATCAGAAAACAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
166864 AAAGGTCACTTCATAATCAGATGAGTTGTT
66 AAAGGTCACTTCATAATCAGATGAGTTGTT
166894 ATCAGAATCA
1 ATCAGAATCA
166904 ACATGTTGCA
Statistics
Matches: 101, Mismatches: 4, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
95 101 1.00
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (95 bp):
ATCAGAATCAGAAAACAAGATTTCTCGGTATTAAAAGAACTATCGATATCTGTGAAATCATCTTG
AAAGGTCACTTCATAATCAGATGAGTTGTT
Done.