Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007173.1 Hibiscus syriacus cultivar Beakdansim tig00018827_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 1357898
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.33
File 7 of 9
Found at i:1088531 original size:20 final size:21
Alignment explanation
Indices: 1088457--1088540 Score: 64
Period size: 21 Copynumber: 4.0 Consensus size: 21
1088447 ATATATCCCT
* *
1088457 TGAATATGCATCGATACACTA
1 TGAATGTGCATCAATACACTA
* * * *
1088478 TGAAGGTGCACCGATGCATTCCT-
1 TGAATGTGCATCAATACA---CTA
1088501 TGAATGTGCATCAATACACTA
1 TGAATGTGCATCAATACACTA
*
1088522 TGAA-GTGCATCGATACACT
1 TGAATGTGCATCAATACACT
1088541 CGTCTGGTTT
Statistics
Matches: 50, Mismatches: 9, Indels: 9
0.74 0.13 0.13
Matches are distributed among these distances:
20 16 0.32
21 18 0.36
23 14 0.28
24 2 0.04
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.27
Consensus pattern (21 bp):
TGAATGTGCATCAATACACTA
Found at i:1089000 original size:18 final size:20
Alignment explanation
Indices: 1088957--1089000 Score: 58
Period size: 18 Copynumber: 2.4 Consensus size: 20
1088947 TCGAAAATTA
1088957 TTGTTTTGATTTAATCATTG
1 TTGTTTTGATTTAATCATTG
*
1088977 TT-TTTT-ATTTAATTA-TG
1 TTGTTTTGATTTAATCATTG
1088994 TTGTTTT
1 TTGTTTT
1089001 CATGAAAACT
Statistics
Matches: 22, Mismatches: 1, Indels: 4
0.81 0.04 0.15
Matches are distributed among these distances:
17 4 0.18
18 12 0.55
19 4 0.18
20 2 0.09
ACGTcount: A:0.18, C:0.02, G:0.11, T:0.68
Consensus pattern (20 bp):
TTGTTTTGATTTAATCATTG
Found at i:1092185 original size:12 final size:13
Alignment explanation
Indices: 1092168--1092196 Score: 51
Period size: 12 Copynumber: 2.3 Consensus size: 13
1092158 GGTCCGACCC
1092168 GACCCGAC-CGTT
1 GACCCGACACGTT
1092180 GACCCGACACGTT
1 GACCCGACACGTT
1092193 GACC
1 GACC
1092197 GTTGATTTGG
Statistics
Matches: 16, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
12 8 0.50
13 8 0.50
ACGTcount: A:0.21, C:0.41, G:0.24, T:0.14
Consensus pattern (13 bp):
GACCCGACACGTT
Found at i:1092322 original size:28 final size:28
Alignment explanation
Indices: 1092205--1092392 Score: 189
Period size: 29 Copynumber: 6.6 Consensus size: 28
1092195 CCGTTGATTT
* *
1092205 GGTGATATTTTAGTAATTATTTTAAAATT
1 GGTGATATTTTCGTAATTATTTTAAAA-A
* *
1092234 GGTGGTATTTTGGTAATTATTTTAAAAA
1 GGTGATATTTTCGTAATTATTTTAAAAA
* *
1092262 GGGTGTTATTTTCGTAATTATTTTAAAGA
1 -GGTGATATTTTCGTAATTATTTTAAAAA
* *
1092291 -GTGATAATTTCGTAATTGTTTTAAAAA
1 GGTGATATTTTCGTAATTATTTTAAAAA
* * *
1092318 AGTGATATTTTAGTAATTATTTTGAAAAT
1 GGTGATATTTTCGTAATTATTTT-AAAAA
* *
1092347 GGTGCTATTTTGGTAATTATTTTGAAAAA
1 GGTGATATTTTCGTAATTATTTT-AAAAA
* *
1092376 GGGTGTTAATTTCGTAA
1 -GGTGATATTTTCGTAA
1092393 AATGGTTGAT
Statistics
Matches: 134, Mismatches: 21, Indels: 7
0.83 0.13 0.04
Matches are distributed among these distances:
27 23 0.17
28 19 0.14
29 79 0.59
30 13 0.10
ACGTcount: A:0.32, C:0.02, G:0.19, T:0.47
Consensus pattern (28 bp):
GGTGATATTTTCGTAATTATTTTAAAAA
Found at i:1092356 original size:84 final size:86
Alignment explanation
Indices: 1092206--1092392 Score: 225
Period size: 84 Copynumber: 2.2 Consensus size: 86
1092196 CGTTGATTTG
* * ** * * *
1092206 GTGATATTTTAGTAATTATTTTAAAATTGGTGGTATTTTGGTAATTATTTTAAAAAGGGTGTTAT
1 GTGATAATTTCGTAATTATTTTAAAATAAGTGATATTTTAGTAATTATTTTAAAAAGGGTGCTAT
1092271 TTTCGTAATTATTTT-AAAGA
66 TTTCGTAATTATTTTAAAAGA
* * *
1092291 GTGATAATTTCGTAATTGTTTTAAAA-AAGTGATATTTTAGTAATTATTTTGAAAATGGTGCTAT
1 GTGATAATTTCGTAATTATTTTAAAATAAGTGATATTTTAGTAATTATTTTAAAAAGGGTGCTAT
* *
1092355 TTTGGTAATTATTTTGAAAAAGG
66 TTTCGTAATTATTTT--AAAAGA
*
1092378 GTGTTAATTTCGTAA
1 GTGATAATTTCGTAA
1092393 AATGGTTGAT
Statistics
Matches: 86, Mismatches: 13, Indels: 4
0.83 0.13 0.04
Matches are distributed among these distances:
84 45 0.52
85 23 0.27
87 18 0.21
ACGTcount: A:0.33, C:0.02, G:0.18, T:0.47
Consensus pattern (86 bp):
GTGATAATTTCGTAATTATTTTAAAATAAGTGATATTTTAGTAATTATTTTAAAAAGGGTGCTAT
TTTCGTAATTATTTTAAAAGA
Found at i:1099293 original size:19 final size:19
Alignment explanation
Indices: 1099269--1099332 Score: 87
Period size: 19 Copynumber: 3.4 Consensus size: 19
1099259 ATTGGTTTAT
1099269 AACCGGTTTGATCGGTCTG
1 AACCGGTTTGATCGGTCTG
*
1099288 AACCGGTTTGACCGGTCTG
1 AACCGGTTTGATCGGTCTG
1099307 AACCAGG-TTGATCGGT-TCG
1 AACC-GGTTTGATCGGTCT-G
1099326 AACCGGT
1 AACCGGT
1099333 CCGACCCGAC
Statistics
Matches: 40, Mismatches: 2, Indels: 6
0.83 0.04 0.12
Matches are distributed among these distances:
18 3 0.08
19 35 0.88
20 2 0.05
ACGTcount: A:0.19, C:0.23, G:0.31, T:0.27
Consensus pattern (19 bp):
AACCGGTTTGATCGGTCTG
Found at i:1099425 original size:29 final size:28
Alignment explanation
Indices: 1099389--1099558 Score: 159
Period size: 29 Copynumber: 6.0 Consensus size: 28
1099379 GTTGACCGGT
**
1099389 TGATATTTTAGTAATTATTTTGAAATTGG
1 TGATATTTTAGTAATTATTTT-AAAAAGG
* * *
1099418 TGGTATTTTGGTAATTATTTTAAAAAAAG
1 TGATATTTTAGTAATTATTTT-AAAAAGG
* * *
1099447 TGTTATTTTTGTAATT-TTTTTAAAAGAG
1 TGATATTTTAGTAATTATTTTAAAAAG-G
1099475 TGATAATTTT-GTAATT-TTTTAAAAA-G
1 TGAT-ATTTTAGTAATTATTTTAAAAAGG
*
1099501 TGATATTTTACTAATTATTTTAAAAATGG
1 TGATATTTTAGTAATTATTTTAAAAA-GG
* *
1099530 TGTTATTTTGGTAATTATTTTGAAAAAGG
1 TGATATTTTAGTAATTATTTT-AAAAAGG
1099559 GTGTTAATTT
Statistics
Matches: 118, Mismatches: 16, Indels: 14
0.80 0.11 0.09
Matches are distributed among these distances:
25 5 0.04
26 10 0.08
27 13 0.11
28 22 0.19
29 63 0.53
30 5 0.04
ACGTcount: A:0.34, C:0.01, G:0.15, T:0.50
Consensus pattern (28 bp):
TGATATTTTAGTAATTATTTTAAAAAGG
Found at i:1101775 original size:41 final size:42
Alignment explanation
Indices: 1101718--1101805 Score: 115
Period size: 41 Copynumber: 2.1 Consensus size: 42
1101708 ACCCGAAGGT
* * * *
1101718 CTTATGGATGGCCCGAAGGACTT-ATTATCTTGCTCAAAAGA
1 CTTATAGATGACCCGAAGGACTTAATCATCATGCTCAAAAGA
* *
1101759 CTTATAGATGACCCGAAGGATTTAATCATCATGCTCGAAAGA
1 CTTATAGATGACCCGAAGGACTTAATCATCATGCTCAAAAGA
1101801 CTTAT
1 CTTAT
1101806 TGATAGTCCA
Statistics
Matches: 40, Mismatches: 6, Indels: 1
0.85 0.13 0.02
Matches are distributed among these distances:
41 20 0.50
42 20 0.50
ACGTcount: A:0.32, C:0.19, G:0.19, T:0.30
Consensus pattern (42 bp):
CTTATAGATGACCCGAAGGACTTAATCATCATGCTCAAAAGA
Found at i:1106074 original size:7 final size:6
Alignment explanation
Indices: 1106042--1106084 Score: 52
Period size: 6 Copynumber: 7.2 Consensus size: 6
1106032 AAACTAATAC
* *
1106042 ATGC-A ATGCAT ATGCAA ATGCAA ATGCCAA ATGCAA ATACAA A
1 ATGCAA ATGCAA ATGCAA ATGCAA ATG-CAA ATGCAA ATGCAA A
1106085 AGGTGTCATT
Statistics
Matches: 33, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
5 4 0.12
6 23 0.70
7 6 0.18
ACGTcount: A:0.49, C:0.19, G:0.14, T:0.19
Consensus pattern (6 bp):
ATGCAA
Found at i:1122029 original size:184 final size:182
Alignment explanation
Indices: 1121657--1122029 Score: 556
Period size: 184 Copynumber: 2.0 Consensus size: 182
1121647 TTAAATGTTT
*
1121657 TTTAATTCAAAAAAAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAATTTTAGAT
1 TTTAATTAAAAAAAAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAATTTTAGAT
* * * *
1121722 AAATTTTTTAATTAATTAATATTGATTTAGGTTTAAAAGTTATTGGATCTTAAATTATTAATTGA
66 AAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTATTAGATATTAAATTATTAATTGA
* ** *
1121787 TTTTAGATAGTTTGGGATGAACTCATATGTTATATATGTTATATATAATATT
131 TTTTAAATAGTTTGGGATGAACTCATATGTTATATATAATATATATAATATA
1121839 TTTAATTAAAAAAAACAGTTTACT-ATTAATTTAAATAATATATAATTATAAAATAAAAATTTTA
1 TTTAATT-AAAAAAA-AGTTTA-TAATTAATTTAAATAATATATAATTATAAAATAAAAATTTTA
*
1121903 TATAAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTATTAGATATTAAATTATTAAT
63 GATAAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTATTAGATATTAAATTATTAAT
* *
1121968 TGAGTTTTAAATAGTTTGGGTTGAAC-CTATATGTTTATATATAATATATTTAA-A-A
128 TGA-TTTTAAATAGTTTGGGATGAACTC-ATATG-TTATATATAATATATATAATATA
1122023 TTTAATT
1 TTTAATT
1122030 TTGATTAATT
Statistics
Matches: 173, Mismatches: 12, Indels: 10
0.89 0.06 0.05
Matches are distributed among these distances:
182 7 0.04
183 6 0.03
184 117 0.68
185 27 0.16
186 16 0.09
ACGTcount: A:0.44, C:0.02, G:0.08, T:0.46
Consensus pattern (182 bp):
TTTAATTAAAAAAAAGTTTATAATTAATTTAAATAATATATAATTATAAAATAAAAATTTTAGAT
AAAATTTTTAATTAATTAATATTGATTTAGGTTTAAAAATTATTAGATATTAAATTATTAATTGA
TTTTAAATAGTTTGGGATGAACTCATATGTTATATATAATATATATAATATA
Found at i:1122288 original size:15 final size:17
Alignment explanation
Indices: 1122270--1122306 Score: 60
Period size: 17 Copynumber: 2.3 Consensus size: 17
1122260 TGTGCAAATT
1122270 CGGGTACCC-G-ATTTC
1 CGGGTACCCGGAATTTC
1122285 CGGGTACCCGGAATTTC
1 CGGGTACCCGGAATTTC
1122302 CGGGT
1 CGGGT
1122307 CGACGATTTC
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
15 9 0.45
16 1 0.05
17 10 0.50
ACGTcount: A:0.14, C:0.30, G:0.32, T:0.24
Consensus pattern (17 bp):
CGGGTACCCGGAATTTC
Found at i:1122365 original size:15 final size:15
Alignment explanation
Indices: 1122345--1122400 Score: 53
Period size: 15 Copynumber: 3.6 Consensus size: 15
1122335 CGGATGTTAC
1122345 GGGTACCCGGTAATT
1 GGGTACCCGGTAATT
1122360 GGGTACCC-G-AATTTT
1 GGGTACCCGGTAA--TT
*
1122375 GCGGGTACCCGGTAATC
1 --GGGTACCCGGTAATT
1122392 GGGTACCCG
1 GGGTACCCG
1122401 ATACCCGGTT
Statistics
Matches: 34, Mismatches: 1, Indels: 12
0.72 0.02 0.26
Matches are distributed among these distances:
13 2 0.06
14 1 0.03
15 19 0.56
17 9 0.26
18 1 0.03
19 2 0.06
ACGTcount: A:0.18, C:0.25, G:0.34, T:0.23
Consensus pattern (15 bp):
GGGTACCCGGTAATT
Found at i:1122368 original size:32 final size:32
Alignment explanation
Indices: 1122332--1122401 Score: 104
Period size: 32 Copynumber: 2.2 Consensus size: 32
1122322 CCGTGTCTCG
* *
1122332 ACCCGGATGTTACGGGTACCCGGTAATTGGGT
1 ACCCGAATGTTACGGGTACCCGGTAATCGGGT
* *
1122364 ACCCGAATTTTGCGGGTACCCGGTAATCGGGT
1 ACCCGAATGTTACGGGTACCCGGTAATCGGGT
1122396 ACCCGA
1 ACCCGA
1122402 TACCCGGTTT
Statistics
Matches: 34, Mismatches: 4, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
32 34 1.00
ACGTcount: A:0.20, C:0.26, G:0.31, T:0.23
Consensus pattern (32 bp):
ACCCGAATGTTACGGGTACCCGGTAATCGGGT
Found at i:1122557 original size:16 final size:15
Alignment explanation
Indices: 1122531--1122566 Score: 54
Period size: 16 Copynumber: 2.3 Consensus size: 15
1122521 TAAAATACAA
1122531 AATATAATAATTCAT
1 AATATAATAATTCAT
1122546 AATATAAATAATTCAT
1 AATAT-AATAATTCAT
*
1122562 TATAT
1 AATAT
1122567 TTTATATAAT
Statistics
Matches: 19, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
15 5 0.26
16 14 0.74
ACGTcount: A:0.53, C:0.06, G:0.00, T:0.42
Consensus pattern (15 bp):
AATATAATAATTCAT
Found at i:1124061 original size:20 final size:20
Alignment explanation
Indices: 1124038--1124094 Score: 80
Period size: 20 Copynumber: 2.9 Consensus size: 20
1124028 TGAAATGAAA
1124038 ATCGCAACGAGAGAATGACT
1 ATCGCAACGAGAGAATGACT
* *
1124058 ATCGCAACGCG-GAAAAGACT
1 ATCGCAACGAGAG-AATGACT
1124078 ATCGCAACGAGAGAATG
1 ATCGCAACGAGAGAATG
1124095 GCAACGCGAA
Statistics
Matches: 31, Mismatches: 4, Indels: 4
0.79 0.10 0.10
Matches are distributed among these distances:
19 1 0.03
20 29 0.94
21 1 0.03
ACGTcount: A:0.40, C:0.21, G:0.26, T:0.12
Consensus pattern (20 bp):
ATCGCAACGAGAGAATGACT
Found at i:1124122 original size:33 final size:33
Alignment explanation
Indices: 1124058--1124205 Score: 175
Period size: 33 Copynumber: 4.7 Consensus size: 33
1124048 GAGAATGACT
* ** *
1124058 ATCGCAACGCGGAAAAGACTATCGCAACGAGAGA
1 ATCGCAACGC-GAAATGAAAATCACAACGAGAGA
*
1124092 ATGGCAACGCGAAATGAAAATCACAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCACAACGAGAGA
*
1124125 ATCGCAACGCGAAATGAAAAT-----CG-CA-A
1 ATCGCAACGCGAAATGAAAATCACAACGAGAGA
*
1124151 ATGGCAACGCGAAATGAAAATCACAACGAGAGA
1 ATCGCAACGCGAAATGAAAATCACAACGAGAGA
1124184 ATCGCAACGCGAAATGAAAATC
1 ATCGCAACGCGAAATGAAAATC
1124206 GCAATGCGAT
Statistics
Matches: 97, Mismatches: 10, Indels: 15
0.80 0.08 0.12
Matches are distributed among these distances:
26 21 0.22
27 1 0.01
28 2 0.02
31 2 0.02
32 1 0.01
33 61 0.63
34 9 0.09
ACGTcount: A:0.46, C:0.21, G:0.23, T:0.10
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCACAACGAGAGA
Found at i:1124183 original size:59 final size:59
Alignment explanation
Indices: 1124091--1124209 Score: 238
Period size: 59 Copynumber: 2.0 Consensus size: 59
1124081 GCAACGAGAG
1124091 AATGGCAACGCGAAATGAAAATCACAACGAGAGAATCGCAACGCGAAATGAAAATCGCA
1 AATGGCAACGCGAAATGAAAATCACAACGAGAGAATCGCAACGCGAAATGAAAATCGCA
1124150 AATGGCAACGCGAAATGAAAATCACAACGAGAGAATCGCAACGCGAAATGAAAATCGCA
1 AATGGCAACGCGAAATGAAAATCACAACGAGAGAATCGCAACGCGAAATGAAAATCGCA
1124209 A
1 A
1124210 TGCGATTTTC
Statistics
Matches: 60, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
59 60 1.00
ACGTcount: A:0.48, C:0.20, G:0.22, T:0.10
Consensus pattern (59 bp):
AATGGCAACGCGAAATGAAAATCACAACGAGAGAATCGCAACGCGAAATGAAAATCGCA
Found at i:1124610 original size:119 final size:114
Alignment explanation
Indices: 1124446--1124679 Score: 423
Period size: 119 Copynumber: 2.0 Consensus size: 114
1124436 GTGTATTTCG
1124446 ACCCATCGCCACGCAAACTTTTGGTCATCAAGGCAGACGACAACTTAGTCCAGGTAGCTTTCCAT
1 ACCCATCGCCACGCAAACTTTTGGTCATCAAGGCAGACGACAACTTAGTCCAGGTAGCTTTCCAT
1124511 ATATACGAACCCCACGAAAACAGATTCCATGCATTTAGGTCCTCTACCAAT
66 ATATACGAACCCCACGAAAAC--ATTCCATGCATTTAGGTCCTCTACCAAT
1124562 ACCCATCGCCACGCAAACTTTTGTGGTCATCAAAGGCAGACGACAACTTAGTCCAGGTAGCTTTC
1 ACCCATCGCCACGCAAAC-TTT-TGGTCATC-AAGGCAGACGACAACTTAGTCCAGGTAGCTTTC
1124627 CATATATACGAACCCCACGAAAACATTCCATGCATTTAGGTCCTCTACCAAT
63 CATATATACGAACCCCACGAAAACATTCCATGCATTTAGGTCCTCTACCAAT
1124679 A
1 A
1124680 ATAGCTCCTG
Statistics
Matches: 115, Mismatches: 0, Indels: 5
0.96 0.00 0.04
Matches are distributed among these distances:
116 18 0.16
117 32 0.28
118 8 0.07
119 57 0.50
ACGTcount: A:0.31, C:0.30, G:0.15, T:0.24
Consensus pattern (114 bp):
ACCCATCGCCACGCAAACTTTTGGTCATCAAGGCAGACGACAACTTAGTCCAGGTAGCTTTCCAT
ATATACGAACCCCACGAAAACATTCCATGCATTTAGGTCCTCTACCAAT
Found at i:1125383 original size:20 final size:20
Alignment explanation
Indices: 1125360--1125415 Score: 71
Period size: 20 Copynumber: 2.8 Consensus size: 20
1125350 TGAAATGAAA
1125360 ATCGCAACGAGAGAATGACT
1 ATCGCAACGAGAGAATGACT
*
1125380 ATCGCAAC-ACG-GAAAAGACT
1 ATCGCAACGA-GAG-AATGACT
1125400 ATCGCAACGAGAGAAT
1 ATCGCAACGAGAGAAT
1125416 CGCAATGCGA
Statistics
Matches: 30, Mismatches: 2, Indels: 8
0.75 0.05 0.20
Matches are distributed among these distances:
19 2 0.07
20 26 0.87
21 2 0.07
ACGTcount: A:0.43, C:0.21, G:0.23, T:0.12
Consensus pattern (20 bp):
ATCGCAACGAGAGAATGACT
Found at i:1125419 original size:14 final size:14
Alignment explanation
Indices: 1125400--1125455 Score: 58
Period size: 14 Copynumber: 3.6 Consensus size: 14
1125390 GGAAAAGACT
1125400 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
*
1125414 ATCGCAATGCGAAATGAAA
1 ATCGCAA--CG--A-GAGA
1125433 ATCGCAACGAGAGA
1 ATCGCAACGAGAGA
1125447 ATCGCAACG
1 ATCGCAACG
1125456 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 2, Indels: 10
0.74 0.04 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.43, C:0.21, G:0.25, T:0.11
Consensus pattern (14 bp):
ATCGCAACGAGAGA
Found at i:1125437 original size:19 final size:19
Alignment explanation
Indices: 1125413--1125477 Score: 68
Period size: 19 Copynumber: 3.7 Consensus size: 19
1125403 GCAACGAGAG
1125413 AATCGCAATGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
1125432 AATCGCAA--CG--A-GAG
1 AATCGCAATGCGAAATGAA
*
1125446 AATCGCAACGCGAAATGAA
1 AATCGCAATGCGAAATGAA
*
1125465 AATTGCAATGCGA
1 AATCGCAATGCGA
1125478 TTTTGGTTTC
Statistics
Matches: 37, Mismatches: 4, Indels: 10
0.73 0.08 0.20
Matches are distributed among these distances:
14 10 0.27
15 1 0.03
16 2 0.05
17 2 0.05
18 1 0.03
19 21 0.57
ACGTcount: A:0.45, C:0.18, G:0.23, T:0.14
Consensus pattern (19 bp):
AATCGCAATGCGAAATGAA
Found at i:1125439 original size:33 final size:33
Alignment explanation
Indices: 1125400--1125472 Score: 128
Period size: 33 Copynumber: 2.2 Consensus size: 33
1125390 GGAAAAGACT
*
1125400 ATCGCAACGAGAGAATCGCAATGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAACGCGAAATGAAA
1125433 ATCGCAACGAGAGAATCGCAACGCGAAATGAAA
1 ATCGCAACGAGAGAATCGCAACGCGAAATGAAA
*
1125466 ATTGCAA
1 ATCGCAA
1125473 TGCGATTTTG
Statistics
Matches: 38, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
33 38 1.00
ACGTcount: A:0.45, C:0.19, G:0.23, T:0.12
Consensus pattern (33 bp):
ATCGCAACGAGAGAATCGCAACGCGAAATGAAA
Found at i:1125569 original size:20 final size:20
Alignment explanation
Indices: 1125504--1125594 Score: 114
Period size: 20 Copynumber: 4.5 Consensus size: 20
1125494 CGATTATCTC
*
1125504 GTTGCGATTTTCA-TTTCGC
1 GTTGCGATTTTCATTTTCGT
1125523 GTTGCGATTTTCATTTCTC-T
1 GTTGCGATTTTCATTT-TCGT
**
1125543 CGTTGCGATAGTCATTTTCGT
1 -GTTGCGATTTTCATTTTCGT
*
1125564 GTTGCGATTTTCATTTTCAT
1 GTTGCGATTTTCATTTTCGT
1125584 GTTGCGATTTT
1 GTTGCGATTTT
1125595 AAGTTTAGAA
Statistics
Matches: 62, Mismatches: 6, Indels: 7
0.83 0.08 0.09
Matches are distributed among these distances:
19 13 0.21
20 32 0.52
21 17 0.27
ACGTcount: A:0.12, C:0.18, G:0.20, T:0.51
Consensus pattern (20 bp):
GTTGCGATTTTCATTTTCGT
Found at i:1126184 original size:27 final size:23
Alignment explanation
Indices: 1126161--1126218 Score: 75
Period size: 21 Copynumber: 2.5 Consensus size: 23
1126151 ATTTTTAAAT
1126161 TAAGTTAATAATAAAATATATTTAA
1 TAAGTTAAT-ATAAAA-ATATTTAA
*
1126186 TAAGTTGATATAAAAATATTT--
1 TAAGTTAATATAAAAATATTTAA
1126207 TAAGTTAATATA
1 TAAGTTAATATA
1126219 TATATAATTA
Statistics
Matches: 31, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
21 11 0.35
23 6 0.19
24 6 0.19
25 8 0.26
ACGTcount: A:0.52, C:0.00, G:0.07, T:0.41
Consensus pattern (23 bp):
TAAGTTAATATAAAAATATTTAA
Found at i:1126572 original size:39 final size:39
Alignment explanation
Indices: 1126483--1126572 Score: 112
Period size: 39 Copynumber: 2.3 Consensus size: 39
1126473 GAACATTAAT
*
1126483 GTGAAATAATTTAAGAAATTAAGAATTTAGAATGTTATG
1 GTGAAATAATTTAAGAAAATAAGAATTTAGAATGTTATG
* * *
1126522 GTGTCAA-AATTTAAGAAAATATGATTTTAGAATGTTA-G
1 GTG-AAATAATTTAAGAAAATAAGAATTTAGAATGTTATG
1126560 AGTGAAATAATTT
1 -GTGAAATAATTT
1126573 GAGGAATATG
Statistics
Matches: 43, Mismatches: 5, Indels: 6
0.80 0.09 0.11
Matches are distributed among these distances:
38 3 0.07
39 38 0.88
40 2 0.05
ACGTcount: A:0.44, C:0.01, G:0.18, T:0.37
Consensus pattern (39 bp):
GTGAAATAATTTAAGAAAATAAGAATTTAGAATGTTATG
Found at i:1127016 original size:31 final size:29
Alignment explanation
Indices: 1126978--1127043 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 29
1126968 GGGTGTCAAC
*
1126978 ATCTTAATTAAATAAAAACGAAAGTGATAAT
1 ATCTTAATTAAATAAAAA--AAAATGATAAT
*
1127009 ATCTTAATTAAATAAAAAAAAATGATTAT
1 ATCTTAATTAAATAAAAAAAAATGATAAT
1127038 ATCTTA
1 ATCTTA
1127044 TGTTTTTTTT
Statistics
Matches: 33, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
29 15 0.45
31 18 0.55
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.33
Consensus pattern (29 bp):
ATCTTAATTAAATAAAAAAAAATGATAAT
Found at i:1127284 original size:21 final size:21
Alignment explanation
Indices: 1127258--1127315 Score: 62
Period size: 21 Copynumber: 2.7 Consensus size: 21
1127248 AGCACTATCT
*
1127258 AAAATATTATTTTTTCTACCG
1 AAAATATTATTTTTGCTACCG
* * *
1127279 AAAATATTAATTTCGCTACCT
1 AAAATATTATTTTTGCTACCG
*
1127300 AAAATGAATATTTTTG
1 AAAAT-ATTATTTTTG
1127316 ATATTAACAT
Statistics
Matches: 29, Mismatches: 7, Indels: 1
0.78 0.19 0.03
Matches are distributed among these distances:
21 22 0.76
22 7 0.24
ACGTcount: A:0.38, C:0.12, G:0.07, T:0.43
Consensus pattern (21 bp):
AAAATATTATTTTTGCTACCG
Found at i:1127381 original size:45 final size:45
Alignment explanation
Indices: 1127312--1127399 Score: 140
Period size: 45 Copynumber: 2.0 Consensus size: 45
1127302 AATGAATATT
* *
1127312 TTTGATATTAACATTTCCAGTAAAAAAATAACATTTTAGATAATG
1 TTTGATATTAACATTTCCAATAAAAAAATAACATTTTAAATAATG
* *
1127357 TTTGATATTAACATTTTCAATAAAAAAATAATATTTTAAATAA
1 TTTGATATTAACATTTCCAATAAAAAAATAACATTTTAAATAA
1127400 CATTCTATAA
Statistics
Matches: 39, Mismatches: 4, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
45 39 1.00
ACGTcount: A:0.48, C:0.07, G:0.06, T:0.40
Consensus pattern (45 bp):
TTTGATATTAACATTTCCAATAAAAAAATAACATTTTAAATAATG
Found at i:1130163 original size:150 final size:149
Alignment explanation
Indices: 1129892--1130414 Score: 849
Period size: 150 Copynumber: 3.5 Consensus size: 149
1129882 TAAAGAGTCC
* * *
1129892 TCCATTTGTGGAGCACTCACGGGAAAAGGTACTCCCTGCAACAGAACAGTTAATGAAAATGGAAG
1 TCCATTTGTGGAGCACCCACGGGCAAAGGTACTCCCTGCAACAGAACAGTTAATGGAAATGGAAG
1129957 GTGTTGGCAACACTTAAATTATAGTGTCAGCAGCAGCAGCGGTAGCAGTTTTACTCGGCACTCGA
66 GTGTTGGCAACACTTAAATTATAGTGTCAGCAGCAGCAGCGGTAGCAGTTTTACTCGGCACTC-A
*
1130022 ACTATGGTGATTCATATACA
130 ACTATGGTGGTTCATATACA
*
1130042 TCCATTTGTGGAGTACCCACGGGCAAAGGTACTCCCTGCAACAGAACAGTTAATGGAAATGGAAG
1 TCCATTTGTGGAGCACCCACGGGCAAAGGTACTCCCTGCAACAGAACAGTTAATGGAAATGGAAG
* *
1130107 GTGTTGGCAACACTTAAATTATGGTGTCAGCAGCAGCAGCGGTAGCAGTTCTACTCGG----C-A
66 GTGTTGGCAACACTTAAATTATAGTGTCAGCAGCAGCAGCGGTAGCAGTTTTACTCGGCACTCAA
1130167 CTATGGTGGTTCATATACA
131 CTATGGTGGTTCATATACA
* * * *
1130186 TCCATTTGTGGAGCACCCACGGGCAATGGTACTCCCTGCAGCAGAACAGTTCATGGAAATGGAAT
1 TCCATTTGTGGAGCACCCACGGGCAAAGGTACTCCCTGCAACAGAACAGTTAATGGAAATGGAAG
*
1130251 GTGTTGGCAACACTTAAATTATAGTGTCAGCAGCAGCAGAGGTAGCAGTTTTACTCGGCACTCAA
66 GTGTTGGCAACACTTAAATTATAGTGTCAGCAGCAGCAGCGGTAGCAGTTTTACTCGGCACTC-A
1130316 ACTATGGTGGTTCATATACA
130 ACTATGGTGGTTCATATACA
* ** *
1130336 TCCATTTGTGGAGCACCCACGCGCAAAGGTACTCCCTGCATGAGAACAGTTAATGGAAACGGAAG
1 TCCATTTGTGGAGCACCCACGGGCAAAGGTACTCCCTGCAACAGAACAGTTAATGGAAATGGAAG
1130401 GTGTTGGCAACACT
66 GTGTTGGCAACACT
1130415 GATCTGGTTG
Statistics
Matches: 345, Mismatches: 22, Indels: 12
0.91 0.06 0.03
Matches are distributed among these distances:
144 134 0.39
146 1 0.00
148 1 0.00
150 209 0.61
ACGTcount: A:0.29, C:0.21, G:0.25, T:0.24
Consensus pattern (149 bp):
TCCATTTGTGGAGCACCCACGGGCAAAGGTACTCCCTGCAACAGAACAGTTAATGGAAATGGAAG
GTGTTGGCAACACTTAAATTATAGTGTCAGCAGCAGCAGCGGTAGCAGTTTTACTCGGCACTCAA
CTATGGTGGTTCATATACA
Found at i:1130557 original size:27 final size:27
Alignment explanation
Indices: 1130519--1130572 Score: 108
Period size: 27 Copynumber: 2.0 Consensus size: 27
1130509 TCACTTTCTG
1130519 TTGGATTATGTATTGTTTTATGAGGAT
1 TTGGATTATGTATTGTTTTATGAGGAT
1130546 TTGGATTATGTATTGTTTTATGAGGAT
1 TTGGATTATGTATTGTTTTATGAGGAT
1130573 GCTATCTAAA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 27 1.00
ACGTcount: A:0.22, C:0.00, G:0.26, T:0.52
Consensus pattern (27 bp):
TTGGATTATGTATTGTTTTATGAGGAT
Found at i:1132421 original size:20 final size:20
Alignment explanation
Indices: 1132396--1132511 Score: 87
Period size: 20 Copynumber: 5.8 Consensus size: 20
1132386 TCGAGAATAC
1132396 GTAAATCGCAACGCGTATCT
1 GTAAATCGCAACGCGTATCT
* *
1132416 GTAAATCGCAACGAGAATAC-
1 GTAAATCGCAACGCGTAT-CT
* * *
1132436 GTAAATCGCAATGTGTATCC
1 GTAAATCGCAACGCGTATCT
*
1132456 GTAAATCGCAACGAC-AATACAT
1 GTAAATCGCAACG-CGTAT-C-T
* *
1132478 -AAAATCACAACGCGTAT-T
1 GTAAATCGCAACGCGTATCT
1132496 CGTAAATCGCAACGCG
1 -GTAAATCGCAACGCG
1132512 ATTTTTAAAG
Statistics
Matches: 74, Mismatches: 14, Indels: 16
0.71 0.13 0.15
Matches are distributed among these distances:
18 1 0.01
19 1 0.01
20 58 0.78
21 14 0.19
ACGTcount: A:0.38, C:0.23, G:0.18, T:0.21
Consensus pattern (20 bp):
GTAAATCGCAACGCGTATCT
Found at i:1132442 original size:40 final size:40
Alignment explanation
Indices: 1132387--1132509 Score: 167
Period size: 40 Copynumber: 3.0 Consensus size: 40
1132377 AACTTAATTT
1132387 CGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAA
1 CGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAA
* * *
1132427 CGAGAATACGTAAATCGCAATGTGTATCCGTAAATCGCAA
1 CGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAA
* * *
1132467 CGACAATACATAAAATCACAACGCGTAT-TCGTAAATCGCAA
1 CGAGAATACGT-AAATCGCAACGCGTATCT-GTAAATCGCAA
1132508 CG
1 CG
1132510 CGATTTTTAA
Statistics
Matches: 72, Mismatches: 9, Indels: 3
0.86 0.11 0.04
Matches are distributed among these distances:
40 46 0.64
41 26 0.36
ACGTcount: A:0.39, C:0.23, G:0.18, T:0.20
Consensus pattern (40 bp):
CGAGAATACGTAAATCGCAACGCGTATCTGTAAATCGCAA
Found at i:1132913 original size:34 final size:34
Alignment explanation
Indices: 1132836--1132920 Score: 127
Period size: 33 Copynumber: 2.5 Consensus size: 34
1132826 AATGGTGCTC
** *
1132836 AAAATGACTATCGCAACGAGAGAATCGCAATGCG
1 AAAATGAAAATCGCAACGAGAGAAACGCAATGCG
*
1132870 -AAATGAAAATCGCAACGAGTGAAACGCAATGCG
1 AAAATGAAAATCGCAACGAGAGAAACGCAATGCG
1132903 AAAATGAAAATCGCAACG
1 AAAATGAAAATCGCAACG
1132921 CGAGCGATTC
Statistics
Matches: 46, Mismatches: 4, Indels: 2
0.88 0.08 0.04
Matches are distributed among these distances:
33 29 0.63
34 17 0.37
ACGTcount: A:0.46, C:0.19, G:0.22, T:0.13
Consensus pattern (34 bp):
AAAATGAAAATCGCAACGAGAGAAACGCAATGCG
Found at i:1133083 original size:14 final size:14
Alignment explanation
Indices: 1133064--1133100 Score: 56
Period size: 14 Copynumber: 2.6 Consensus size: 14
1133054 CATCAATTAA
1133064 ACAAATCAACATTT
1 ACAAATCAACATTT
* *
1133078 ACAAATCATCTTTT
1 ACAAATCAACATTT
1133092 ACAAATCAA
1 ACAAATCAA
1133101 TTAAACAATC
Statistics
Matches: 20, Mismatches: 3, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.49, C:0.22, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACATTT
Found at i:1135069 original size:20 final size:20
Alignment explanation
Indices: 1135044--1135112 Score: 102
Period size: 20 Copynumber: 3.5 Consensus size: 20
1135034 AAAACTTAAA
1135044 ATCGCAACGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
*
1135064 ATCGCAATGCGAAAATGACT
1 ATCGCAACGCGAAAATGACT
* **
1135084 ATCGCAATGCGAATTTGACT
1 ATCGCAACGCGAAAATGACT
1135104 ATCGCAACG
1 ATCGCAACG
1135113 AGAGAATCGC
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
20 45 1.00
ACGTcount: A:0.36, C:0.23, G:0.20, T:0.20
Consensus pattern (20 bp):
ATCGCAACGCGAAAATGACT
Found at i:1135199 original size:33 final size:31
Alignment explanation
Indices: 1135155--1135232 Score: 84
Period size: 33 Copynumber: 2.5 Consensus size: 31
1135145 GCGATTATAG
* * *
1135155 TTTCGCGTTGCGATTTTATCGTTGCGATTTTCA
1 TTTCGCATTGCGATTCTATCGTTACGA--TTCA
* *
1135188 TTTCTCATTGCGATTCTCTCGTTACGATTCA
1 TTTCGCATTGCGATTCTATCGTTACGATTCA
*
1135219 TTTCGCGTTGCGAT
1 TTTCGCATTGCGAT
1135233 AGTCATTTTT
Statistics
Matches: 38, Mismatches: 7, Indels: 2
0.81 0.15 0.04
Matches are distributed among these distances:
31 16 0.42
33 22 0.58
ACGTcount: A:0.13, C:0.22, G:0.19, T:0.46
Consensus pattern (31 bp):
TTTCGCATTGCGATTCTATCGTTACGATTCA
Found at i:1135466 original size:94 final size:94
Alignment explanation
Indices: 1135320--1135699 Score: 674
Period size: 94 Copynumber: 4.1 Consensus size: 94
1135310 ATGGATTGCA
* *
1135320 TTAC-TTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCAGAGTATTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1135384 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
1135413 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1135478 TTAGCAGAATTGGCAGCAACCGAACAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
1135507 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
1 TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
*
1135572 TTAGCAGAATTGGCAGCAACCGAATAAAT
66 TTAGCAGAATTGGCAGCAACCGAACAAAT
* *
1135601 TTAC-TTCAACCAAAAGACAAAACAAAAGACAAATACTAACTTCATAGTGTTAAAGAATAAACAG
1 TTACTTTCAACCAAAAGACAAAAC-AAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAG
* *
1135665 TTTAGCAGTATTGGCAGCAACCGAATAAAT
65 TTTAGCAGAATTGGCAGCAACCGAACAAAT
1135695 TTACT
1 TTACT
1135700 AAGCAATCTA
Statistics
Matches: 278, Mismatches: 6, Indels: 4
0.97 0.02 0.01
Matches are distributed among these distances:
93 23 0.08
94 255 0.92
ACGTcount: A:0.47, C:0.19, G:0.13, T:0.21
Consensus pattern (94 bp):
TTACTTTCAACCAAAAGACAAAACAAAGACAAATACTAACTTCACAGTGTTAAAGAATACACAGT
TTAGCAGAATTGGCAGCAACCGAACAAAT
Found at i:1137421 original size:20 final size:20
Alignment explanation
Indices: 1137398--1137472 Score: 82
Period size: 20 Copynumber: 3.8 Consensus size: 20
1137388 TGAAATGAAA
1137398 ATCGCAACGAGAGAATGACT
1 ATCGCAACGAGAGAATGACT
* *
1137418 ATCGCAACGCG-GAAAAGACT
1 ATCGCAACGAGAG-AATGACT
* **
1137438 ATCGCAACGCGA-AATGAAA
1 ATCGCAACGAGAGAATGACT
1137457 ATCGCAACGAGAGAAT
1 ATCGCAACGAGAGAAT
1137473 CGCAACGCGA
Statistics
Matches: 46, Mismatches: 6, Indels: 6
0.79 0.10 0.10
Matches are distributed among these distances:
19 16 0.35
20 30 0.65
ACGTcount: A:0.43, C:0.21, G:0.24, T:0.12
Consensus pattern (20 bp):
ATCGCAACGAGAGAATGACT
Found at i:1137530 original size:19 final size:20
Alignment explanation
Indices: 1137508--1137618 Score: 101
Period size: 20 Copynumber: 5.8 Consensus size: 20
1137498 GCGATTTTGG
1137508 TTTCGCGTTGCGATTTTCA-
1 TTTCGCGTTGCGATTTTCAT
1137527 TTTCGCGTTGCGA--TTC--
1 TTTCGCGTTGCGATTTTCAT
*
1137543 --TCTCGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
* **
1137561 TTCTCTCGTTGCGATAGTCAT
1 TT-TCGCGTTGCGATTTTCAT
*
1137582 TTTCGTGTTGCGATTTTCAT
1 TTTCGCGTTGCGATTTTCAT
**
1137602 TTTCATGTTGCGATTTT
1 TTTCGCGTTGCGATTTT
1137619 AAGTTTAGAA
Statistics
Matches: 77, Mismatches: 8, Indels: 13
0.79 0.08 0.13
Matches are distributed among these distances:
14 10 0.13
16 3 0.04
17 3 0.04
19 13 0.17
20 30 0.39
21 18 0.23
ACGTcount: A:0.11, C:0.20, G:0.20, T:0.50
Consensus pattern (20 bp):
TTTCGCGTTGCGATTTTCAT
Found at i:1138175 original size:20 final size:20
Alignment explanation
Indices: 1138150--1138361 Score: 162
Period size: 20 Copynumber: 10.6 Consensus size: 20
1138140 CTTTAAAAAT
*
1138150 CACGTTGCGATTTATGGATA
1 CACGTTGCGATTTACGGATA
* *
1138170 CACGTTGCGATTTTACGTATT
1 CACGTTGCGA-TTTACGGATA
**
1138191 GTCGTTGCGATTTACGGATA
1 CACGTTGCGATTTACGGATA
* * *
1138211 -ATCATTGCGATTTACGTATT
1 CA-CGTTGCGATTTACGGATA
* **
1138231 CTCGTTGCGATTTATAGATA
1 CACGTTGCGATTTACGGATA
* * *
1138251 CGCGTTGCGA--TACGTATT
1 CACGTTGCGATTTACGGATA
1138269 CTA-GTTGCGATTTACGGATA
1 C-ACGTTGCGATTTACGGATA
* * *
1138289 CGCGTTGCGATTTTACGTATT
1 CACGTTGCGA-TTTACGGATA
**
1138310 GTCGTTGCGATTTACGGATA
1 CACGTTGCGATTTACGGATA
*
1138330 CGCGTTGCGATTTTACGGATA
1 CACGTTGCGA-TTTACGGATA
*
1138351 CTCGTTGCGAT
1 CACGTTGCGAT
1138362 ATATGTTTGC
Statistics
Matches: 148, Mismatches: 35, Indels: 18
0.74 0.17 0.09
Matches are distributed among these distances:
18 12 0.08
20 86 0.58
21 50 0.34
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (20 bp):
CACGTTGCGATTTACGGATA
Found at i:1138210 original size:41 final size:41
Alignment explanation
Indices: 1138152--1138361 Score: 284
Period size: 41 Copynumber: 5.2 Consensus size: 41
1138142 TTAAAAATCA
* * *
1138152 CGTTGCGATTTATGGATACACGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
** *
1138193 CGTTGCGATTTACGGATAATCATTGCGA-TTTACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
**
1138233 CGTTGCGATTTATAGATACGCGTTGCGA---TACGTATTCT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
1138271 AGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTGT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
* *
1138312 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGGATACT
1 CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
1138353 CGTTGCGAT
1 CGTTGCGAT
1138362 ATATGTTTGC
Statistics
Matches: 148, Mismatches: 18, Indels: 6
0.86 0.10 0.03
Matches are distributed among these distances:
38 35 0.24
40 34 0.23
41 79 0.53
ACGTcount: A:0.20, C:0.17, G:0.25, T:0.38
Consensus pattern (41 bp):
CGTTGCGATTTACGGATACGCGTTGCGATTTTACGTATTCT
Found at i:1138458 original size:19 final size:20
Alignment explanation
Indices: 1138409--1138464 Score: 69
Period size: 19 Copynumber: 2.8 Consensus size: 20
1138399 AATTTGTACT
1138409 ATCGCATTGCGATTCTTCATA
1 ATCGCATTGCGATT-TTCATA
* *
1138430 ATCGCGTTGCGATTTTTAT-
1 ATCGCATTGCGATTTTCATA
*
1138449 TTCGCATTGCGATTTT
1 ATCGCATTGCGATTTT
1138465 GTTGGTCATT
Statistics
Matches: 31, Mismatches: 4, Indels: 2
0.84 0.11 0.05
Matches are distributed among these distances:
19 14 0.45
20 4 0.13
21 13 0.42
ACGTcount: A:0.18, C:0.20, G:0.18, T:0.45
Consensus pattern (20 bp):
ATCGCATTGCGATTTTCATA
Found at i:1139256 original size:21 final size:20
Alignment explanation
Indices: 1139196--1139265 Score: 61
Period size: 21 Copynumber: 3.2 Consensus size: 20
1139186 TTTATACTTA
*
1139196 ATAAAAATAGAAAATAGTATAT
1 ATAAATATA-AAAATA-TATAT
*
1139218 -TTAATATAAAATATTATATAT
1 ATAAATATAAAA-A-TATATAT
1139239 ATAAATACTAAAAATATATAT
1 ATAAATA-TAAAAATATATAT
1139260 GATAAA
1 -ATAAA
1139266 AGTACTATTT
Statistics
Matches: 40, Mismatches: 3, Indels: 10
0.75 0.06 0.19
Matches are distributed among these distances:
20 3 0.08
21 19 0.47
22 13 0.32
23 5 0.12
ACGTcount: A:0.60, C:0.01, G:0.04, T:0.34
Consensus pattern (20 bp):
ATAAATATAAAAATATATAT
Found at i:1139271 original size:24 final size:24
Alignment explanation
Indices: 1139225--1139272 Score: 64
Period size: 24 Copynumber: 2.0 Consensus size: 24
1139215 TATTTAATAT
1139225 AAAATATTATATATATAAATACTA
1 AAAATATTATATATATAAATACTA
1139249 AAAATA-TATATGATA-AAAGTACTA
1 AAAATATTATAT-ATATAAA-TACTA
1139273 TTTCATTTAT
Statistics
Matches: 22, Mismatches: 0, Indels: 4
0.85 0.00 0.15
Matches are distributed among these distances:
23 8 0.36
24 14 0.64
ACGTcount: A:0.58, C:0.04, G:0.04, T:0.33
Consensus pattern (24 bp):
AAAATATTATATATATAAATACTA
Found at i:1141194 original size:3 final size:3
Alignment explanation
Indices: 1141186--1141251 Score: 123
Period size: 3 Copynumber: 22.0 Consensus size: 3
1141176 CATGTAAGTA
*
1141186 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TGT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1141234 TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT
1141252 ATATGCATTT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
3 61 1.00
ACGTcount: A:0.32, C:0.00, G:0.02, T:0.67
Consensus pattern (3 bp):
TAT
Found at i:1141890 original size:113 final size:114
Alignment explanation
Indices: 1141691--1141909 Score: 305
Period size: 113 Copynumber: 1.9 Consensus size: 114
1141681 TGAAGGATGT
* ** *
1141691 TGAATCTAGTGACGATCTCACTCTTTCTTATAAAAGATGATGAGTTGTGAAATGATCTTACTCCT
1 TGAATCTAGTGACGATCTCACTCTTTCCTATAAAAGATGATGAGTCATGAAATGATCTAACTCCT
* *
1141756 TCCTATAAAGGACATTAAGTCGTAATTCGGGGTGATCCACTCATTTTGC
66 TCCTATAAAGGACACTAAGTCGTAATTCGGGATGATCCACTCATTTTGC
* * * *
1141805 TGAATCTGGTGATGATCTCACTCTTTCCTGTGAAAGA-GATGAGTCATGAAATGATCTAACTCCT
1 TGAATCTAGTGACGATCTCACTCTTTCCTATAAAAGATGATGAGTCATGAAATGATCTAACTCCT
* * **
1141869 TCCTTTGAAGGATGCTAAGTCGTAATTCGGGATGATCCACT
66 TCCTATAAAGGACACTAAGTCGTAATTCGGGATGATCCACT
1141910 ACTGAGATGG
Statistics
Matches: 91, Mismatches: 14, Indels: 1
0.86 0.13 0.01
Matches are distributed among these distances:
113 59 0.65
114 32 0.35
ACGTcount: A:0.27, C:0.19, G:0.20, T:0.34
Consensus pattern (114 bp):
TGAATCTAGTGACGATCTCACTCTTTCCTATAAAAGATGATGAGTCATGAAATGATCTAACTCCT
TCCTATAAAGGACACTAAGTCGTAATTCGGGATGATCCACTCATTTTGC
Found at i:1142993 original size:30 final size:28
Alignment explanation
Indices: 1142959--1143034 Score: 107
Period size: 30 Copynumber: 2.6 Consensus size: 28
1142949 ACCCTCATTT
1142959 TATTTTCTTCTTCTTTTTTCATTTTTATTA
1 TATTTT-TTCTT-TTTTTTCATTTTTATTA
*
1142989 TATTTTTTCTTTGTTTTCAAATTTTTATTA
1 TATTTTTTCTTTTTTTTC--ATTTTTATTA
1143019 TATTTTTTCTTTTTTT
1 TATTTTTTCTTTTTTT
1143035 CTTCATGTGT
Statistics
Matches: 42, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
28 6 0.14
29 5 0.12
30 31 0.74
ACGTcount: A:0.14, C:0.09, G:0.01, T:0.75
Consensus pattern (28 bp):
TATTTTTTCTTTTTTTTCATTTTTATTA
Found at i:1145308 original size:21 final size:20
Alignment explanation
Indices: 1145265--1145325 Score: 63
Period size: 19 Copynumber: 3.0 Consensus size: 20
1145255 ATAAAAATAG
* *
1145265 AAAATAGTATATTTAAT-AT
1 AAAATAGTATATATAATAAA
1145284 AAAATAGTATATATAACTACAA
1 AAAATAGTATATATAA-TA-AA
*
1145306 AAAATA-TATATATGATAAA
1 AAAATAGTATATATAATAAA
1145325 A
1 A
1145326 GTTCTATTTT
Statistics
Matches: 36, Mismatches: 3, Indels: 6
0.80 0.07 0.13
Matches are distributed among these distances:
19 18 0.50
20 3 0.08
21 8 0.22
22 7 0.19
ACGTcount: A:0.59, C:0.03, G:0.05, T:0.33
Consensus pattern (20 bp):
AAAATAGTATATATAATAAA
Found at i:1146607 original size:40 final size:40
Alignment explanation
Indices: 1146530--1146608 Score: 115
Period size: 40 Copynumber: 2.0 Consensus size: 40
1146520 AATCATTCGA
* * *
1146530 AAATGATCTTACTCTTTCCTTTGAAAGAATCTGAGTCGTG
1 AAATGATCTTACTCATTCCTCTGAAAGAATCTAAGTCGTG
1146570 AAATGATCTTACTCATTCCTCTGAAAG-ATGCTAAGTCGT
1 AAATGATCTTACTCATTCCTCTGAAAGAAT-CTAAGTCGT
1146609 AATTCGGGGT
Statistics
Matches: 35, Mismatches: 3, Indels: 2
0.88 0.08 0.05
Matches are distributed among these distances:
39 2 0.06
40 33 0.94
ACGTcount: A:0.29, C:0.19, G:0.16, T:0.35
Consensus pattern (40 bp):
AAATGATCTTACTCATTCCTCTGAAAGAATCTAAGTCGTG
Found at i:1147679 original size:11 final size:11
Alignment explanation
Indices: 1147665--1147689 Score: 50
Period size: 11 Copynumber: 2.3 Consensus size: 11
1147655 TTTTATTATA
1147665 TTTTTCCTTTT
1 TTTTTCCTTTT
1147676 TTTTTCCTTTT
1 TTTTTCCTTTT
1147687 TTT
1 TTT
1147690 ATGTTTATTA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
11 14 1.00
ACGTcount: A:0.00, C:0.16, G:0.00, T:0.84
Consensus pattern (11 bp):
TTTTTCCTTTT
Found at i:1147687 original size:38 final size:38
Alignment explanation
Indices: 1147645--1147756 Score: 181
Period size: 38 Copynumber: 3.0 Consensus size: 38
1147635 TTAATTCTTG
* * *
1147645 TTTTTTTCATTTTTATTATATTTTTCCTTTTTTTTTCC
1 TTTTTTTCATTTTTATTATATTTTTTCTTTCTTTTTCA
*
1147683 TTTTTTT-ATGTTTATTATATTTTTTCTTTCTTTTTCA
1 TTTTTTTCATTTTTATTATATTTTTTCTTTCTTTTTCA
1147720 TTTTTTTCATTTTTATTATATTTTTTCTTTCTTTTTC
1 TTTTTTTCATTTTTATTATATTTTTTCTTTCTTTTTC
1147757 TTCATGTGTA
Statistics
Matches: 68, Mismatches: 5, Indels: 2
0.91 0.07 0.03
Matches are distributed among these distances:
37 33 0.49
38 35 0.51
ACGTcount: A:0.12, C:0.11, G:0.01, T:0.77
Consensus pattern (38 bp):
TTTTTTTCATTTTTATTATATTTTTTCTTTCTTTTTCA
Found at i:1147732 original size:8 final size:9
Alignment explanation
Indices: 1147645--1147756 Score: 61
Period size: 9 Copynumber: 11.9 Consensus size: 9
1147635 TTAATTCTTG
1147645 TTTTTTTCA
1 TTTTTTTCA
1147654 TTTTTATT-A
1 TTTTT-TTCA
* *
1147663 TATTTTTCCTT
1 T-TTTTTTC-A
*
1147674 TTTTTTTCC
1 TTTTTTTCA
1147683 TTTTTTT-A
1 TTTTTTTCA
*
1147691 TGTTTATT-A
1 T-TTTTTTCA
*
1147700 TATTTTTTCT
1 T-TTTTTTCA
1147710 TTCTTTTTCA
1 TT-TTTTTCA
1147720 TTTTTTTCA
1 TTTTTTTCA
1147729 TTTTTATT-A
1 TTTTT-TTCA
*
1147738 TATTTTTTCT
1 T-TTTTTTCA
1147748 TTCTTTTTC
1 TT-TTTTTC
1147757 TTCATGTGTA
Statistics
Matches: 81, Mismatches: 11, Indels: 21
0.72 0.10 0.19
Matches are distributed among these distances:
8 1 0.01
9 45 0.56
10 34 0.42
11 1 0.01
ACGTcount: A:0.12, C:0.11, G:0.01, T:0.77
Consensus pattern (9 bp):
TTTTTTTCA
Found at i:1152368 original size:95 final size:94
Alignment explanation
Indices: 1152152--1152370 Score: 303
Period size: 94 Copynumber: 2.3 Consensus size: 94
1152142 CGACGAGGTG
* ** *
1152152 GTATCGATACCATGGTAAGTGTATCGATACCAGGCCATATCGAATCTAAAATTGGTATCGATACC
1 GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTATCGATACC
* * * *
1152217 GGAAGGGGTATCGTTACCATAGTATGGTA
66 AGAAGGGGTATCGATACAATAGTATAGTA
* *
1152246 GTATCGATACCATGGTAAAGGTATCGATACGAGGAAACATCGAATCTAAAATTGGTATCGATACC
1 GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTATCGATACC
*
1152311 ATAAGGGGGTATCGATACAATAGTATAGTA
66 AGAA-GGGGTATCGATACAATAGTATAGTA
* * *
1152341 GTATTGATACTATGGTAGGGGTATCGATAC
1 GTATCGATACCATGGTAAGGGTATCGATAC
1152371 TATAGAGCCA
Statistics
Matches: 109, Mismatches: 15, Indels: 1
0.87 0.12 0.01
Matches are distributed among these distances:
94 61 0.56
95 48 0.44
ACGTcount: A:0.33, C:0.15, G:0.25, T:0.27
Consensus pattern (94 bp):
GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTATCGATACC
AGAAGGGGTATCGATACAATAGTATAGTA
Found at i:1152805 original size:55 final size:55
Alignment explanation
Indices: 1152714--1152855 Score: 173
Period size: 55 Copynumber: 2.6 Consensus size: 55
1152704 CAAAAAGTTG
* *
1152714 AGAAATTCATATTG-GTATATGAATTTCCGTCA--GGCACTTTGTGTGCAAAACTA
1 AGAAATTCATATTGAGTGTATGAATTTCCGT-ATGGGCACTATGTGTGCAAAACTA
* *
1152767 TGAAATTCATATTGAGTGTATGAATTTCCGTATGGGCACTATGTGTGCAGAACTA
1 AGAAATTCATATTGAGTGTATGAATTTCCGTATGGGCACTATGTGTGCAAAACTA
** * * *
1152822 AGAAATTCATGCTAAGAGTATGAATTTCAGTATG
1 AGAAATTCATATTGAGTGTATGAATTTCCGTATG
1152856 AGAAATATAT
Statistics
Matches: 76, Mismatches: 10, Indels: 4
0.84 0.11 0.04
Matches are distributed among these distances:
53 14 0.18
54 15 0.20
55 47 0.62
ACGTcount: A:0.32, C:0.13, G:0.21, T:0.34
Consensus pattern (55 bp):
AGAAATTCATATTGAGTGTATGAATTTCCGTATGGGCACTATGTGTGCAAAACTA
Found at i:1153196 original size:67 final size:66
Alignment explanation
Indices: 1153082--1153268 Score: 239
Period size: 67 Copynumber: 2.8 Consensus size: 66
1153072 AAAGATTAAT
* * *
1153082 AGGCCTAACTATGCATTTGAAAGAAATGTGACATTTATGCCAGTTAGATGAAAGGCTAAATGCCT
1 AGGCCTAACTGTGCATTT-AAA-AAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAATGCCT
1153147 TTG
64 TTG
* *
1153150 AGGCCTAACTGTGCATTTACAAAAAGGTGTCATTTATGCCAGTTAGATTAAAGGCTAAGTGCCTT
1 AGGCCTAACTGTGCATTTA-AAAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAATGCCTT
1153215 TG
65 TG
* * * * *
1153217 AGGCCTAGCTGTGCATTTAGTAGAAAGGTGTTAATTATGTCAGTTAGATGAA
1 AGGCCTAACTGTGCATTTA--AAAAAGGTGTCATTTATGCCAGTTAGATGAA
1153269 TGGTTAAAGA
Statistics
Matches: 105, Mismatches: 12, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
67 60 0.57
68 45 0.43
ACGTcount: A:0.32, C:0.14, G:0.24, T:0.31
Consensus pattern (66 bp):
AGGCCTAACTGTGCATTTAAAAAAGGTGTCATTTATGCCAGTTAGATGAAAGGCTAAATGCCTTT
G
Found at i:1153863 original size:20 final size:20
Alignment explanation
Indices: 1153814--1153869 Score: 76
Period size: 22 Copynumber: 2.7 Consensus size: 20
1153804 ATACCGGAAG
*
1153814 GGGTATCGATACCATAGTAT
1 GGGTATCGATACCATAGTAA
*
1153834 GGAAGTATCGATACCATGGTAA
1 GG--GTATCGATACCATAGTAA
1153856 GGGTATCGATACCA
1 GGGTATCGATACCA
1153870 GGAAACATGG
Statistics
Matches: 32, Mismatches: 2, Indels: 4
0.84 0.05 0.11
Matches are distributed among these distances:
20 14 0.44
22 18 0.56
ACGTcount: A:0.32, C:0.16, G:0.27, T:0.25
Consensus pattern (20 bp):
GGGTATCGATACCATAGTAA
Found at i:1153909 original size:94 final size:95
Alignment explanation
Indices: 1153744--1153962 Score: 332
Period size: 94 Copynumber: 2.3 Consensus size: 95
1153734 TTTCGGGGTG
* * ** *
1153744 GTATCGATACTATGGTAAGGGTATCGATATCAGGCCATATCGAATCTAAAATTGGTAACGATACC
1 GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTAACGATACC
*
1153809 GGAAGGG-GTATCGATACCATAGTATGGAA
66 GGAAGGGTGTATCGATACCATAGTATAGAA
* *
1153838 GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATGGAATCTAAAATTGGTATCGATACC
1 GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTAACGATACC
* *
1153903 GTAAGGGTGTATCGATACCATAGTATAGTA
66 GGAAGGGTGTATCGATACCATAGTATAGAA
*
1153933 GTATCGATACCATGGTAGGGGTATCGATAC
1 GTATCGATACCATGGTAAGGGTATCGATAC
1153963 TATGGAGCCA
Statistics
Matches: 113, Mismatches: 11, Indels: 1
0.90 0.09 0.01
Matches are distributed among these distances:
94 64 0.57
95 49 0.43
ACGTcount: A:0.33, C:0.15, G:0.26, T:0.26
Consensus pattern (95 bp):
GTATCGATACCATGGTAAGGGTATCGATACCAGGAAACATCGAATCTAAAATTGGTAACGATACC
GGAAGGGTGTATCGATACCATAGTATAGAA
Found at i:1154443 original size:55 final size:55
Alignment explanation
Indices: 1154307--1154482 Score: 176
Period size: 55 Copynumber: 3.2 Consensus size: 55
1154297 ATTTTTTTTG
* * * * *
1154307 AGAAATTCATACTAGGTGTATGAATTTCCGTAAGGGCACTTTGTGTGCAAAACTA
1 AGAAATTCATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGTACAAAACTA
* * * * *
1154362 AGAAATTCATATTGAGAGTATGAATTTTCGTATGGGTACTATGTGTACATAACTA
1 AGAAATTCATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGTACAAAACTA
* * * * *
1154417 AGAAATTCATACTAAGTGTAAT-AATTTTTGTATGAGAAATATATGTACAAATA-TA
1 AGAAATTCATACTAAGTGT-ATGAATTTTCGTATGGGCACTATGTGTACAAA-ACTA
*
1154472 AGAAGTTCATA
1 AGAAATTCATA
1154483 ATAATTAGGT
Statistics
Matches: 99, Mismatches: 20, Indels: 4
0.80 0.16 0.03
Matches are distributed among these distances:
55 96 0.97
56 3 0.03
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (55 bp):
AGAAATTCATACTAAGTGTATGAATTTTCGTATGGGCACTATGTGTACAAAACTA
Found at i:1158539 original size:55 final size:55
Alignment explanation
Indices: 1158423--1158585 Score: 152
Period size: 55 Copynumber: 3.0 Consensus size: 55
1158413 AACATACTGG
* * * * * *
1158423 GTGTATCAATTTCCGTAAGGGCATTTTGTGTGCAAAACTAAGAAATTCATAATTA
1 GTGTATGAATTTTCGTATGGGCACTATATGTGCAAAACTAAGAAATTCATAATTA
** *
1158478 AAGTATGAATTTTCGTATGGGCACTATATGTG-AAGAACTAAGAAATTCAT-ACTA
1 GTGTATGAATTTTCGTATGGGCACTATATGTGCAA-AACTAAGAAATTCATAATTA
* * * * *
1158532 TGTGTATGAATTTTCGTATGAGAAATATATGTACAAATA-TAAGAAGTTCATAAT
1 -GTGTATGAATTTTCGTATGGGCACTATATGTGCAAA-ACTAAGAAATTCATAAT
1158586 AATTATGTGA
Statistics
Matches: 86, Mismatches: 17, Indels: 9
0.77 0.15 0.08
Matches are distributed among these distances:
54 5 0.06
55 77 0.90
56 4 0.05
ACGTcount: A:0.38, C:0.10, G:0.18, T:0.34
Consensus pattern (55 bp):
GTGTATGAATTTTCGTATGGGCACTATATGTGCAAAACTAAGAAATTCATAATTA
Found at i:1158916 original size:68 final size:67
Alignment explanation
Indices: 1158787--1158963 Score: 203
Period size: 68 Copynumber: 2.6 Consensus size: 67
1158777 TAGGACTAGT
** * * *
1158787 TGTGCATTTGGCAAAAAGGTGTCATTTATGCAGTTAGGTGAAAGGCTAAGTGCCTTTGAGGCCTA
1 TGTGCATTTAACAAAAAGGTGTCATTTATCCAGTTAGATGAAAGGCTAAATGCCTTTGAGGCCTA
1158852 AC
66 AC
* * *
1158854 TGTGCATTTAACAGAAAGGTTTCATTTATTCCATTTAGATGAAAGGCTAAATGCCTTTGAGGCCT
1 TGTGCATTTAACAAAAAGGTGTCATTTA-TCCAGTTAGATGAAAGGCTAAATGCCTTTGAGGCCT
**
1158919 AGT
65 AAC
** * *
1158922 TGTGCATTTGGCAGAAAA-GTGTCAATTATGCAGTTAGATGAA
1 TGTGCATTTAACA-AAAAGGTGTCATTTATCCAGTTAGATGAA
1158964 CGATTAAAGA
Statistics
Matches: 91, Mismatches: 17, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
67 36 0.40
68 52 0.57
69 3 0.03
ACGTcount: A:0.29, C:0.14, G:0.25, T:0.32
Consensus pattern (67 bp):
TGTGCATTTAACAAAAAGGTGTCATTTATCCAGTTAGATGAAAGGCTAAATGCCTTTGAGGCCTA
AC
Found at i:1159555 original size:81 final size:81
Alignment explanation
Indices: 1158914--1159538 Score: 824
Period size: 81 Copynumber: 7.7 Consensus size: 81
1158904 ATGCCTTTGA
* * *
1158914 GGCCTAGTTGTGCATTTGGCAGAAAAGTGTCAATTATG-CAGTTAGATGAACGATTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
1158978 TGAGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* * ** ** * *
1158994 GGCCTAGTTGTGCATTTGGTAGAAACATGTCAATTATGCCAGTTAGATGAGTGGTTAAATACCAT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
1159059 TGAGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* * *
1159075 GACCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATTCCAGTTAGATGAACGATTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
*
1159140 TGTGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* * * *
1159156 GGTCTAGTTGTGCATTTGGCAGAAAGATGTCAATTATGCCAGTTAGATGAACTGTTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
*
1159221 TAAGTAAAAGATAAAT
66 TGAGTAAAAGATAAAT
* * * *
1159237 GGCCTAGCTGTGTATTTAGCAGAAATGTGTCAATTAT-CCAAGTTAGATGAATGGTTAAAGACCG
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCC-AGTTAGATGAACGGTTAAAGACCG
*
1159301 TTAAGTAAAAGATAAAT
65 TTGAGTAAAAGATAAAT
* * * * * * *
1159318 GGTCTAGCTGAGTATTTGGCAGAAAGGTGTCAATTATACAAATTAGATGAACGATTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
*
1159383 TGAGTAATAGATAAAT
66 TGAGTAAAAGATAAAT
* * *
1159399 GGCCTAGTTGTGCATTTGGCTGAAAGGTGTCAATTATGCCAGTTAGATTAACGGTTAAAGACCGT
1 GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
*
1159464 TGAGTAAAATATAAAT
66 TGAGTAAAAGATAAAT
* * * * * *
1159480 GGCCTAGCTATACATTTGGCAGACAA-TTGTCAATCATGCAAGTTAGATGAAAGGTTAAA
1 GGCCTAGCTGTGCATTTGGCAGA-AAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAA
1159539 TGCCTTTGGG
Statistics
Matches: 473, Mismatches: 68, Indels: 7
0.86 0.12 0.01
Matches are distributed among these distances:
80 37 0.08
81 433 0.92
82 3 0.01
ACGTcount: A:0.36, C:0.12, G:0.24, T:0.29
Consensus pattern (81 bp):
GGCCTAGCTGTGCATTTGGCAGAAAGGTGTCAATTATGCCAGTTAGATGAACGGTTAAAGACCGT
TGAGTAAAAGATAAAT
Found at i:1162283 original size:104 final size:104
Alignment explanation
Indices: 1162103--1162310 Score: 416
Period size: 104 Copynumber: 2.0 Consensus size: 104
1162093 ATCACATTCA
1162103 CTATTTATTGATGACCTTTCTCACATTGATATTCACAGAAAATCTTGGATTTTTAATCAGTGGAT
1 CTATTTATTGATGACCTTTCTCACATTGATATTCACAGAAAATCTTGGATTTTTAATCAGTGGAT
1162168 TCCTTCTTTGGACTCACTAACCAACTTACCGTCATTTTT
66 TCCTTCTTTGGACTCACTAACCAACTTACCGTCATTTTT
1162207 CTATTTATTGATGACCTTTCTCACATTGATATTCACAGAAAATCTTGGATTTTTAATCAGTGGAT
1 CTATTTATTGATGACCTTTCTCACATTGATATTCACAGAAAATCTTGGATTTTTAATCAGTGGAT
1162272 TCCTTCTTTGGACTCACTAACCAACTTACCGTCATTTTT
66 TCCTTCTTTGGACTCACTAACCAACTTACCGTCATTTTT
1162311 TATACACCCA
Statistics
Matches: 104, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
104 104 1.00
ACGTcount: A:0.26, C:0.21, G:0.12, T:0.41
Consensus pattern (104 bp):
CTATTTATTGATGACCTTTCTCACATTGATATTCACAGAAAATCTTGGATTTTTAATCAGTGGAT
TCCTTCTTTGGACTCACTAACCAACTTACCGTCATTTTT
Found at i:1166319 original size:15 final size:14
Alignment explanation
Indices: 1166296--1166340 Score: 54
Period size: 15 Copynumber: 3.0 Consensus size: 14
1166286 AAGTTTGCTA
*
1166296 AAAAAAAAACGAAAT
1 AAAATAAAA-GAAAT
1166311 AAAATAAAATGAAAT
1 AAAATAAAA-GAAAT
1166326 AAAATAGAAAGAAAT
1 AAAATA-AAAGAAAT
1166341 GGGTTGCCTC
Statistics
Matches: 27, Mismatches: 2, Indels: 2
0.87 0.06 0.06
Matches are distributed among these distances:
15 24 0.89
16 3 0.11
ACGTcount: A:0.76, C:0.02, G:0.09, T:0.13
Consensus pattern (14 bp):
AAAATAAAAGAAAT
Found at i:1170666 original size:21 final size:21
Alignment explanation
Indices: 1170642--1170690 Score: 80
Period size: 21 Copynumber: 2.3 Consensus size: 21
1170632 GGGATGCAAT
*
1170642 GAACTTTTCTTGTGAAATTGC
1 GAACTTTTCTTATGAAATTGC
1170663 GAACTTTTCTTATGAAATTGC
1 GAACTTTTCTTATGAAATTGC
*
1170684 TAACTTT
1 GAACTTT
1170691 CCTATGAGTT
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
21 26 1.00
ACGTcount: A:0.27, C:0.14, G:0.14, T:0.45
Consensus pattern (21 bp):
GAACTTTTCTTATGAAATTGC
Found at i:1170696 original size:20 final size:21
Alignment explanation
Indices: 1170642--1170697 Score: 69
Period size: 21 Copynumber: 2.7 Consensus size: 21
1170632 GGGATGCAAT
* *
1170642 GAACTTTTCTTGTGAAATTGC
1 GAACTTTTCCTATGAAATTGC
*
1170663 GAACTTTTCTTATGAAATTGC
1 GAACTTTTCCTATGAAATTGC
*
1170684 TAAC-TTTCCTATGA
1 GAACTTTTCCTATGA
1170698 GTTCTTCCAA
Statistics
Matches: 32, Mismatches: 3, Indels: 1
0.89 0.08 0.03
Matches are distributed among these distances:
20 9 0.28
21 23 0.72
ACGTcount: A:0.27, C:0.16, G:0.14, T:0.43
Consensus pattern (21 bp):
GAACTTTTCCTATGAAATTGC
Found at i:1173073 original size:75 final size:75
Alignment explanation
Indices: 1172955--1173099 Score: 213
Period size: 75 Copynumber: 1.9 Consensus size: 75
1172945 CAAATATAAA
* *
1172955 ATAAAAATATTATTTAAAATAATATTCGAAATCCTAATTAAAATACT-AAAACCTATTTAAACTA
1 ATAAAAATAATATTTAAAATAATATGCGAAATCCTAATTAAAATACTAAAAACCTATTTAAACTA
1173019 AAATACATAG
66 AAATACATAG
* * *
1173029 ATAAAATATAATATTTAAAATATTATGCTTAAA-CTTAATTAAAATACTAAAAACCTATTTAAAC
1 ATAAAA-ATAATATTTAAAATAATATGC-GAAATCCTAATTAAAATACTAAAAACCTATTTAAAC
1173093 TAAAATA
64 TAAAATA
1173100 TCTAAAACAA
Statistics
Matches: 63, Mismatches: 5, Indels: 4
0.88 0.07 0.06
Matches are distributed among these distances:
74 6 0.10
75 32 0.51
76 25 0.40
ACGTcount: A:0.54, C:0.10, G:0.02, T:0.34
Consensus pattern (75 bp):
ATAAAAATAATATTTAAAATAATATGCGAAATCCTAATTAAAATACTAAAAACCTATTTAAACTA
AAATACATAG
Found at i:1177308 original size:20 final size:20
Alignment explanation
Indices: 1177283--1177349 Score: 89
Period size: 20 Copynumber: 3.3 Consensus size: 20
1177273 TTTTCCCAAT
1177283 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGTAAA
* ** *
1177303 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGTAAA
1177323 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGTAAA
1177344 TCGCAA
1 TCGCAA
1177350 CGTGAATTGG
Statistics
Matches: 38, Mismatches: 8, Indels: 2
0.79 0.17 0.04
Matches are distributed among these distances:
20 22 0.58
21 16 0.42
ACGTcount: A:0.40, C:0.18, G:0.22, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATAAGTAAA
Found at i:1177325 original size:41 final size:41
Alignment explanation
Indices: 1177280--1177375 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
1177270 CGATTTTCCC
1177280 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
1177321 AATTCGCAATGCGAATAAGTAAATCGCAACGTGAATTGGGA
1 AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
*
1177362 AAATCGCAATGCGA
1 AATTCGCAATGCGA
1177376 TACTGACTAT
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.40, C:0.17, G:0.24, T:0.20
Consensus pattern (41 bp):
AATTCGCAATGCGAATAAGTAAATCGCAACGCGAATTGGGA
Found at i:1177329 original size:21 final size:20
Alignment explanation
Indices: 1177283--1177375 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
1177273 TTTTCCCAAT
*
1177283 TCGCAATGCGAATAAGTAAA
1 TCGCAATGCGAATAAGGAAA
* **
1177303 TCGCAACGCGAATTGGGAAA
1 TCGCAATGCGAATAAGGAAA
*
1177323 TTCGCAATGCGAATAAGTAAA
1 -TCGCAATGCGAATAAGGAAA
* * **
1177344 TCGCAACGTGAATTGGGAAAA
1 TCGCAATGCGAATAAGG-AAA
1177365 TCGCAATGCGA
1 TCGCAATGCGA
1177376 TACTGACTAT
Statistics
Matches: 56, Mismatches: 15, Indels: 3
0.76 0.20 0.04
Matches are distributed among these distances:
20 28 0.50
21 28 0.50
ACGTcount: A:0.39, C:0.17, G:0.25, T:0.19
Consensus pattern (20 bp):
TCGCAATGCGAATAAGGAAA
Found at i:1177406 original size:41 final size:42
Alignment explanation
Indices: 1177361--1177439 Score: 106
Period size: 41 Copynumber: 1.9 Consensus size: 42
1177351 GTGAATTGGG
* * *
1177361 AAAATCGCAATGCGATACTGAC-TATCGCAATGCGATAATAA
1 AAAATCGCAACGAGATACTGACTTATCGCAACGCGATAATAA
* *
1177402 AAAATCGCAACGAGATACTTACTTTTCGCAACGCGATA
1 AAAATCGCAACGAGATACTGACTTATCGCAACGCGATA
1177440 CTGACTTTCG
Statistics
Matches: 32, Mismatches: 5, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
41 19 0.59
42 13 0.41
ACGTcount: A:0.39, C:0.22, G:0.16, T:0.23
Consensus pattern (42 bp):
AAAATCGCAACGAGATACTGACTTATCGCAACGCGATAATAA
Found at i:1177410 original size:21 final size:20
Alignment explanation
Indices: 1177361--1177411 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
1177351 GTGAATTGGG
* *
1177361 AAAATCGCAATGCGATACTG
1 AAAATCGCAATGCGATAATA
**
1177381 ACTATCGCAATGCGATAATAA
1 AAAATCGCAATGCGATAAT-A
1177402 AAAATCGCAA
1 AAAATCGCAA
1177412 CGAGATACTT
Statistics
Matches: 24, Mismatches: 6, Indels: 1
0.77 0.19 0.03
Matches are distributed among these distances:
20 16 0.67
21 8 0.33
ACGTcount: A:0.45, C:0.20, G:0.16, T:0.20
Consensus pattern (20 bp):
AAAATCGCAATGCGATAATA
Found at i:1177430 original size:21 final size:20
Alignment explanation
Indices: 1177406--1177459 Score: 81
Period size: 21 Copynumber: 2.6 Consensus size: 20
1177396 TAATAAAAAA
* *
1177406 TCGCAACGAGATACTTACTTT
1 TCGCAACGCGATACTGAC-TT
1177427 TCGCAACGCGATACTGACTT
1 TCGCAACGCGATACTGACTT
1177447 TCGCAACGCGATA
1 TCGCAACGCGATA
1177460 ATACATAATC
Statistics
Matches: 31, Mismatches: 2, Indels: 1
0.91 0.06 0.03
Matches are distributed among these distances:
20 15 0.48
21 16 0.52
ACGTcount: A:0.28, C:0.28, G:0.19, T:0.26
Consensus pattern (20 bp):
TCGCAACGCGATACTGACTT
Found at i:1177473 original size:21 final size:20
Alignment explanation
Indices: 1177363--1177479 Score: 67
Period size: 21 Copynumber: 5.7 Consensus size: 20
1177353 GAATTGGGAA
* *
1177363 AATCGCAATGCGATACTGACT
1 AATCGCAACGCGATAAT-ACT
* **
1177384 -ATCGCAATGCGATAATAAAA
1 AATCGCAACGCGATAAT-ACT
* *
1177404 AATCGCAACGAGATACTTACT
1 AATCGCAACGCGATA-ATACT
** *
1177425 TTTCGCAACGCGATACTGACT
1 AATCGCAACGCGATAAT-ACT
*
1177446 -TTCGCAACGCGATAATACAT
1 AATCGCAACGCGATAATAC-T
*
1177466 AATCGCAATGCGAT
1 AATCGCAACGCGAT
1177480 TTTCAAAGCG
Statistics
Matches: 75, Mismatches: 16, Indels: 10
0.74 0.16 0.10
Matches are distributed among these distances:
19 2 0.03
20 33 0.44
21 39 0.52
22 1 0.01
ACGTcount: A:0.36, C:0.23, G:0.17, T:0.24
Consensus pattern (20 bp):
AATCGCAACGCGATAATACT
Found at i:1177974 original size:20 final size:20
Alignment explanation
Indices: 1177949--1177986 Score: 58
Period size: 20 Copynumber: 1.9 Consensus size: 20
1177939 CGATTCTCTC
1177949 GTTGCGATAGTCATTTTCGT
1 GTTGCGATAGTCATTTTCGT
**
1177969 GTTGCGATTTTCATTTTC
1 GTTGCGATAGTCATTTTC
1177987 AGAAACTATT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
20 16 1.00
ACGTcount: A:0.13, C:0.16, G:0.21, T:0.50
Consensus pattern (20 bp):
GTTGCGATAGTCATTTTCGT
Found at i:1179336 original size:17 final size:18
Alignment explanation
Indices: 1179293--1179336 Score: 54
Period size: 17 Copynumber: 2.5 Consensus size: 18
1179283 TCCACTTCGG
*
1179293 GAGCCATCACCTCGCCCA
1 GAGCCATCACCTCACCCA
* *
1179311 GAGCTATCA-CTCACCTA
1 GAGCCATCACCTCACCCA
1179328 GAGCCATCA
1 GAGCCATCA
1179337 TCTGATCGAC
Statistics
Matches: 22, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
17 14 0.64
18 8 0.36
ACGTcount: A:0.27, C:0.41, G:0.16, T:0.16
Consensus pattern (18 bp):
GAGCCATCACCTCACCCA
Found at i:1179861 original size:19 final size:18
Alignment explanation
Indices: 1179839--1179934 Score: 75
Period size: 19 Copynumber: 5.6 Consensus size: 18
1179829 GGAAATGGCT
1179839 ATCGCAATGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
*
1179858 ATCGCAA-C--AA-CAAA
1 ATCGCAAGCGAAATGAAA
1179872 ATCGCAACGCGAAATG-AA
1 ATCGCAA-GCGAAATGAAA
*
1179890 ATCGCAA-CG--A-CAAA
1 ATCGCAAGCGAAATGAAA
1179904 ATCGCAACGCGAAATGAAA
1 ATCGCAA-GCGAAATGAAA
1179923 ATCGCAATGCGA
1 ATCGCAA-GCGA
1179935 TTTGTGTTTC
Statistics
Matches: 61, Mismatches: 5, Indels: 22
0.69 0.06 0.25
Matches are distributed among these distances:
14 20 0.33
15 2 0.03
16 5 0.08
17 1 0.02
18 12 0.20
19 21 0.34
ACGTcount: A:0.47, C:0.23, G:0.19, T:0.11
Consensus pattern (18 bp):
ATCGCAAGCGAAATGAAA
Found at i:1179897 original size:32 final size:33
Alignment explanation
Indices: 1179839--1179929 Score: 157
Period size: 32 Copynumber: 2.8 Consensus size: 33
1179829 GGAAATGGCT
*
1179839 ATCGCAATGCGAAATGAAAATCGCAACAACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACAACAAA
*
1179872 ATCGCAACGCGAAATG-AAATCGCAACGACAAA
1 ATCGCAACGCGAAATGAAAATCGCAACAACAAA
1179904 ATCGCAACGCGAAATGAAAATCGCAA
1 ATCGCAACGCGAAATGAAAATCGCAA
1179930 TGCGATTTGT
Statistics
Matches: 55, Mismatches: 2, Indels: 2
0.93 0.03 0.03
Matches are distributed among these distances:
32 31 0.56
33 24 0.44
ACGTcount: A:0.48, C:0.23, G:0.18, T:0.11
Consensus pattern (33 bp):
ATCGCAACGCGAAATGAAAATCGCAACAACAAA
Found at i:1179912 original size:14 final size:14
Alignment explanation
Indices: 1179855--1179912 Score: 62
Period size: 14 Copynumber: 3.9 Consensus size: 14
1179845 ATGCGAAATG
*
1179855 AAAATCGCAACAAC
1 AAAATCGCAACGAC
*
1179869 AAAATCGCAACGCGAA
1 AAAATCGCAA--CGAC
1179885 ATGAAATCGCAACGAC
1 A--AAATCGCAACGAC
1179901 AAAATCGCAACG
1 AAAATCGCAACG
1179913 CGAAATGAAA
Statistics
Matches: 37, Mismatches: 3, Indels: 8
0.77 0.06 0.17
Matches are distributed among these distances:
14 21 0.57
16 7 0.19
18 9 0.24
ACGTcount: A:0.50, C:0.26, G:0.16, T:0.09
Consensus pattern (14 bp):
AAAATCGCAACGAC
Found at i:1181715 original size:14 final size:14
Alignment explanation
Indices: 1181696--1181731 Score: 54
Period size: 14 Copynumber: 2.6 Consensus size: 14
1181686 ATTGTTTAAT
1181696 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
* *
1181710 TGATTTGTAAATGT
1 TGATTTGTAAAAGA
1181724 TGATTTGT
1 TGATTTGT
1181732 TTAATTGATG
Statistics
Matches: 20, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 20 1.00
ACGTcount: A:0.31, C:0.00, G:0.22, T:0.47
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:1181926 original size:20 final size:20
Alignment explanation
Indices: 1181901--1181957 Score: 96
Period size: 20 Copynumber: 2.9 Consensus size: 20
1181891 TCGCATTGCG
*
1181901 ATTTTCTCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAACC
1181921 ATTTTCGCGTTGCGATAACC
1 ATTTTCGCGTTGCGATAACC
*
1181941 ATTTTCGCATTGCGATA
1 ATTTTCGCGTTGCGATA
1181958 GTCAAATGAA
Statistics
Matches: 35, Mismatches: 2, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
20 35 1.00
ACGTcount: A:0.21, C:0.23, G:0.18, T:0.39
Consensus pattern (20 bp):
ATTTTCGCGTTGCGATAACC
Found at i:1183065 original size:24 final size:24
Alignment explanation
Indices: 1183009--1183067 Score: 73
Period size: 24 Copynumber: 2.5 Consensus size: 24
1182999 AGTCAGTATT
* *
1183009 CGAAATTTGATCTTGGTCAATACC
1 CGAAATTTGATATTGGTCAATACA
* *
1183033 CGGACTTTGATATTGGTCAATACA
1 CGAAATTTGATATTGGTCAATACA
*
1183057 CGAATTTTGAT
1 CGAAATTTGAT
1183068 GATGTTTCAG
Statistics
Matches: 29, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 29 1.00
ACGTcount: A:0.29, C:0.17, G:0.19, T:0.36
Consensus pattern (24 bp):
CGAAATTTGATATTGGTCAATACA
Found at i:1185587 original size:14 final size:14
Alignment explanation
Indices: 1185568--1185624 Score: 51
Period size: 14 Copynumber: 3.7 Consensus size: 14
1185558 GCGAAATGAA
1185568 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
1185582 AATCGCAATGCGAAATGAA
1 AATCGCAA--CG--A-GAG
*
1185601 AATCGCAACGAGGG
1 AATCGCAACGAGAG
1185615 AATCGCAACG
1 AATCGCAACG
1185625 CGAAATGAAA
Statistics
Matches: 35, Mismatches: 3, Indels: 10
0.73 0.06 0.21
Matches are distributed among these distances:
14 19 0.54
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.29
ACGTcount: A:0.42, C:0.21, G:0.26, T:0.11
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:1185592 original size:33 final size:33
Alignment explanation
Indices: 1185550--1185643 Score: 170
Period size: 33 Copynumber: 2.8 Consensus size: 33
1185540 GGAAATTACT
1185550 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
1185583 ATCGCAATGCGAAATGAAAATCGCAACGAGGGA
1 ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
*
1185616 ATCGCAACGCGAAATGAAAATCGCAACG
1 ATCGCAATGCGAAATGAAAATCGCAACG
1185644 CGAATTTAAT
Statistics
Matches: 59, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 59 1.00
ACGTcount: A:0.44, C:0.20, G:0.24, T:0.12
Consensus pattern (33 bp):
ATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:1185658 original size:19 final size:19
Alignment explanation
Indices: 1185530--1185647 Score: 85
Period size: 19 Copynumber: 6.7 Consensus size: 19
1185520 CTTAATGTCC
* **
1185530 ATCGCAACGCGGAAATTACT
1 ATCGCAACGC-GAAATGAAA
*
1185550 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
*
1185569 ATCGCAA--CG--A-GAGA
1 ATCGCAACGCGAAATGAAA
*
1185583 ATCGCAATGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
**
1185602 ATCGCAA--CG--A-GGGA
1 ATCGCAACGCGAAATGAAA
1185616 ATCGCAACGCGAAATGAAA
1 ATCGCAACGCGAAATGAAA
1185635 ATCGCAACGCGAA
1 ATCGCAACGCGAA
1185648 TTTAATTTCG
Statistics
Matches: 78, Mismatches: 10, Indels: 21
0.72 0.09 0.19
Matches are distributed among these distances:
14 19 0.24
15 2 0.03
16 4 0.05
17 4 0.05
18 2 0.03
19 38 0.49
20 9 0.12
ACGTcount: A:0.42, C:0.21, G:0.24, T:0.13
Consensus pattern (19 bp):
ATCGCAACGCGAAATGAAA
Found at i:1185665 original size:19 final size:20
Alignment explanation
Indices: 1185643--1185685 Score: 61
Period size: 20 Copynumber: 2.2 Consensus size: 20
1185633 AAATCGCAAC
1185643 GCGAATTT-AATTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
* *
1185662 GCGATTTTCATTTTCGCGTT
1 GCGAATTTCAATTTCGCGTT
1185682 GCGA
1 GCGA
1185686 TTCTCTCGTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
19 7 0.33
20 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.23, T:0.42
Consensus pattern (20 bp):
GCGAATTTCAATTTCGCGTT
Found at i:1185670 original size:14 final size:14
Alignment explanation
Indices: 1185671--1185704 Score: 50
Period size: 14 Copynumber: 2.4 Consensus size: 14
1185661 TGCGATTTTC
1185671 ATTTTCGCGTTGCG
1 ATTTTCGCGTTGCG
* *
1185685 ATTCTCTCGTTGCG
1 ATTTTCGCGTTGCG
1185699 ATTTTC
1 ATTTTC
1185705 ATTTCGCATT
Statistics
Matches: 17, Mismatches: 3, Indels: 0
0.85 0.15 0.00
Matches are distributed among these distances:
14 17 1.00
ACGTcount: A:0.09, C:0.24, G:0.21, T:0.47
Consensus pattern (14 bp):
ATTTTCGCGTTGCG
Found at i:1185845 original size:14 final size:14
Alignment explanation
Indices: 1185826--1185862 Score: 65
Period size: 14 Copynumber: 2.6 Consensus size: 14
1185816 CATCAATTAA
1185826 ACAAATCAACTTTT
1 ACAAATCAACTTTT
*
1185840 ACAAATCACCTTTT
1 ACAAATCAACTTTT
1185854 ACAAATCAA
1 ACAAATCAA
1185863 TTAAACAATC
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.46, C:0.24, G:0.00, T:0.30
Consensus pattern (14 bp):
ACAAATCAACTTTT
Found at i:1186384 original size:20 final size:20
Alignment explanation
Indices: 1186291--1186384 Score: 89
Period size: 20 Copynumber: 4.7 Consensus size: 20
1186281 CGCTAAGTAA
*
1186291 ATCGCGTTGCGAAAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
* *
1186311 ATCGCGTTGCGAAAGTAAGT
1 ATCGCGTTGCGATAGTCAGT
* ** * *
1186331 ATCTCGTTGCGATTTTTTATT
1 ATCGCGTTGCGA-TAGTCAGT
*
1186352 ATCGCATTGCGATAGTCAGT
1 ATCGCGTTGCGATAGTCAGT
*
1186372 ATCGCATTGCGAT
1 ATCGCGTTGCGAT
1186385 TTTCCCAATT
Statistics
Matches: 60, Mismatches: 13, Indels: 2
0.80 0.17 0.03
Matches are distributed among these distances:
20 47 0.78
21 13 0.22
ACGTcount: A:0.23, C:0.18, G:0.24, T:0.34
Consensus pattern (20 bp):
ATCGCGTTGCGATAGTCAGT
Found at i:1186402 original size:21 final size:21
Alignment explanation
Indices: 1186373--1186448 Score: 91
Period size: 21 Copynumber: 3.7 Consensus size: 21
1186363 ATAGTCAGTA
1186373 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
* * **
1186394 TCGCGTTGCGA-TTTACTTAT
1 TCGCATTGCGATTTTCCCAAT
*
1186414 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCGATTTTCCCAAT
*
1186435 TCGCGTTGCGATTT
1 TCGCATTGCGATTT
1186449 ACTTATTTGC
Statistics
Matches: 44, Mismatches: 10, Indels: 2
0.79 0.18 0.04
Matches are distributed among these distances:
20 16 0.36
21 28 0.64
ACGTcount: A:0.17, C:0.25, G:0.18, T:0.39
Consensus pattern (21 bp):
TCGCATTGCGATTTTCCCAAT
Found at i:1186403 original size:41 final size:41
Alignment explanation
Indices: 1186312--1186446 Score: 130
Period size: 41 Copynumber: 3.3 Consensus size: 41
1186302 AAAGTCAGTA
* * * ** *
1186312 TCGCGTTGCGAAAGTAAGTATCTCGTTGCGATTTT-TTATT
1 TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* *
1186352 ATCGCATTGCGATAGTCAGTATCGCATTGCGATTTTCCCAAT
1 -TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
* ** *
1186394 TCGCGTTGCGAT-TTACTTATTCGCATTGCGAATTTCCCAAT
1 TCGCGTTGCGATAGTAAGTA-TCGCATTGCGATTTTCCCAAT
1186435 TCGCGTTGCGAT
1 TCGCGTTGCGAT
1186447 TTACTTATTT
Statistics
Matches: 78, Mismatches: 14, Indels: 4
0.81 0.15 0.04
Matches are distributed among these distances:
40 3 0.04
41 73 0.94
42 2 0.03
ACGTcount: A:0.20, C:0.21, G:0.21, T:0.38
Consensus pattern (41 bp):
TCGCGTTGCGATAGTAAGTATCGCATTGCGATTTTCCCAAT
Found at i:1186417 original size:20 final size:20
Alignment explanation
Indices: 1186373--1186465 Score: 87
Period size: 20 Copynumber: 4.5 Consensus size: 20
1186363 ATAGTCAGTA
* **
1186373 TCGCATTGCGATTTTCCCAAT
1 TCGCATTGCGA-TTTACTTAT
*
1186394 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
* **
1186414 TCGCATTGCGAATTTCCCAAT
1 TCGCATTGCG-ATTTACTTAT
*
1186435 TCGCGTTGCGATTTACTTAT
1 TCGCATTGCGATTTACTTAT
*
1186455 TTGCATTGCGA
1 TCGCATTGCGA
1186466 ATTGGGAAAA
Statistics
Matches: 57, Mismatches: 14, Indels: 3
0.77 0.19 0.04
Matches are distributed among these distances:
20 31 0.54
21 26 0.46
ACGTcount: A:0.18, C:0.24, G:0.18, T:0.40
Consensus pattern (20 bp):
TCGCATTGCGATTTACTTAT
Found at i:1186447 original size:41 final size:41
Alignment explanation
Indices: 1186373--1186468 Score: 174
Period size: 41 Copynumber: 2.3 Consensus size: 41
1186363 ATAGTCAGTA
*
1186373 TCGCATTGCGATTTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1186414 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
1 TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
*
1186455 TTGCATTGCGAATT
1 TCGCATTGCGAATT
1186469 GGGAAAATCG
Statistics
Matches: 53, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
41 53 1.00
ACGTcount: A:0.19, C:0.23, G:0.18, T:0.41
Consensus pattern (41 bp):
TCGCATTGCGAATTTCCCAATTCGCGTTGCGATTTACTTAT
Found at i:1190266 original size:21 final size:21
Alignment explanation
Indices: 1190240--1190283 Score: 79
Period size: 21 Copynumber: 2.1 Consensus size: 21
1190230 ACAATATTCT
1190240 AATGTGTTTTCAAATTTCCAA
1 AATGTGTTTTCAAATTTCCAA
*
1190261 AATGTGTTTTCAACTTTCCAA
1 AATGTGTTTTCAAATTTCCAA
1190282 AA
1 AA
1190284 ACAACATTCG
Statistics
Matches: 22, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 22 1.00
ACGTcount: A:0.34, C:0.16, G:0.09, T:0.41
Consensus pattern (21 bp):
AATGTGTTTTCAAATTTCCAA
Found at i:1194693 original size:21 final size:21
Alignment explanation
Indices: 1194668--1194711 Score: 63
Period size: 21 Copynumber: 2.1 Consensus size: 21
1194658 TTTTTTATTG
*
1194668 ATTTTCTTTTTA-TATATTTAT
1 ATTTTATTTTTATTAT-TTTAT
1194689 ATTTTATTTTTATTATTTTAT
1 ATTTTATTTTTATTATTTTAT
1194710 AT
1 AT
1194712 ATAGATATAT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
21 18 0.86
22 3 0.14
ACGTcount: A:0.25, C:0.02, G:0.00, T:0.73
Consensus pattern (21 bp):
ATTTTATTTTTATTATTTTAT
Found at i:1194849 original size:36 final size:35
Alignment explanation
Indices: 1194775--1195080 Score: 149
Period size: 36 Copynumber: 8.5 Consensus size: 35
1194765 TTTAAAAAAC
*
1194775 ATATAATATACT-TTTTAAAAATCGATTTTCG-AAA-AT
1 ATATAATATA-TATTTTGAAAA-C-ATTTT-GAAAATAT
1194811 ATATAATATATAATTTTGAAAACATTTTG--AA-A-
1 ATATAATATAT-ATTTTGAAAACATTTTGAAAATAT
* * * *
1194843 ACAT-ATA-GT-TTTTGAAAACGGTTTTTGGAAATAT
1 ATATAATATATATTTTGAAAAC--ATTTTGAAAATAT
* * *
1194877 ATAT-ATATTATGGTTTTTGAAAAACGTTTCGAAAATAT
1 ATATAATA-TAT--ATTTTG-AAAACATTTTGAAAATAT
1194915 ATATAATATAGT-TTTT-AAAACATTTTGAAAATAT
1 ATATAATATA-TATTTTGAAAACATTTTGAAAATAT
* *
1194949 ATATAATATATAATTTTTAAAATATTTTTGAAAATAT
1 ATATAATATAT-ATTTTGAAAACA-TTTTGAAAATAT
* * *
1194986 ATATATTATATAGTTTTTAAAAAAATATTTTTGAAAATAT
1 ATATAATATATA--TTTT--GAAAACA-TTTTGAAAATAT
**
1195026 ATAT--TATATAGTTTAAAAAAACATTTTTGAAAATAT
1 ATATAATATATA-TTT-TGAAAACA-TTTTGAAAATAT
*
1195062 ATATTATATAGT-TTTTGAA
1 ATATAATATA-TATTTTGAA
1195081 TTTGTTTTAT
Statistics
Matches: 223, Mismatches: 19, Indels: 56
0.75 0.06 0.19
Matches are distributed among these distances:
28 10 0.04
30 6 0.03
31 3 0.01
32 5 0.02
33 5 0.02
34 33 0.15
35 10 0.04
36 47 0.21
37 36 0.16
38 30 0.13
39 10 0.04
40 28 0.13
ACGTcount: A:0.45, C:0.03, G:0.08, T:0.44
Consensus pattern (35 bp):
ATATAATATATATTTTGAAAACATTTTGAAAATAT
Found at i:1194953 original size:38 final size:39
Alignment explanation
Indices: 1194845--1195071 Score: 221
Period size: 36 Copynumber: 6.1 Consensus size: 39
1194835 TTTTGAAAAC
* * *
1194845 ATATAGTTTTTGAAAACGGTTTTTGGAAATATATATATAT
1 ATATAGTTTTTAAAAAC-ATTTTTGAAAATATATATATAT
* * *
1194885 -TATGGTTTTTGAAAAAC-GTTTCG-AAA-ATATATATA-
1 ATATAGTTTTT-AAAAACATTTTTGAAAATATATATATAT
1194920 ATATAGTTTTT-AAAACA-TTTTGAAAATATATATA-AT
1 ATATAGTTTTTAAAAACATTTTTGAAAATATATATATAT
* *
1194956 ATATAATTTTT-AAAATATTTTTGAAAATATATATAT-T
1 ATATAGTTTTTAAAAACATTTTTGAAAATATATATATAT
*
1194993 ATATAGTTTTTAAAAAAATATTTTTG-AAA-ATATATAT-T
1 ATATAGTTTTT--AAAAACATTTTTGAAAATATATATATAT
**
1195031 ATATAGTTTAAAAAAACATTTTTGAAAATATATAT-TAT
1 ATATAGTTTTTAAAAACATTTTTGAAAATATATATATAT
1195069 ATA
1 ATA
1195072 GTTTTTGAAT
Statistics
Matches: 161, Mismatches: 12, Indels: 30
0.79 0.06 0.15
Matches are distributed among these distances:
34 9 0.06
35 4 0.02
36 52 0.32
37 35 0.22
38 32 0.20
39 12 0.07
40 17 0.11
ACGTcount: A:0.45, C:0.02, G:0.08, T:0.45
Consensus pattern (39 bp):
ATATAGTTTTTAAAAACATTTTTGAAAATATATATATAT
Found at i:1195123 original size:5 final size:5
Alignment explanation
Indices: 1195102--1195191 Score: 71
Period size: 5 Copynumber: 17.8 Consensus size: 5
1195092 TATATAATAA
* *
1195102 TATTAT TATTAT TATTT TA-TT TATTT GTA-TT TATTA TATGT T-TTT
1 TATT-T TATT-T TATTT TATTT TATTT -TATTT TATTT TATTT TATTT
* *
1195147 TATTT TATTT TATTT TATTT T-TTAT TAATTC CATTT TATTT TATT
1 TATTT TATTT TATTT TATTT TATT-T T-ATTT TATTT TATTT TATT
1195192 CCATGTCCAA
Statistics
Matches: 69, Mismatches: 8, Indels: 15
0.75 0.09 0.16
Matches are distributed among these distances:
4 11 0.16
5 44 0.64
6 12 0.17
7 2 0.03
ACGTcount: A:0.23, C:0.02, G:0.02, T:0.72
Consensus pattern (5 bp):
TATTT
Found at i:1195134 original size:14 final size:13
Alignment explanation
Indices: 1195113--1195172 Score: 52
Period size: 14 Copynumber: 4.4 Consensus size: 13
1195103 ATTATTATTA
1195113 TTATTTTATTTAT
1 TTATTTTATTTAT
*
1195126 TTGTATTTATTATAT
1 TTAT-TTTATT-TAT
1195141 GTT-TTTTATTTTATT
1 -TTATTTTA-TTTA-T
1195156 TTATTTTATTT-T
1 TTATTTTATTTAT
1195168 TTATT
1 TTATT
1195173 AATTCCATTT
Statistics
Matches: 40, Mismatches: 1, Indels: 13
0.74 0.02 0.24
Matches are distributed among these distances:
12 6 0.15
13 3 0.08
14 17 0.43
15 12 0.30
16 2 0.05
ACGTcount: A:0.20, C:0.00, G:0.03, T:0.77
Consensus pattern (13 bp):
TTATTTTATTTAT
Found at i:1195137 original size:28 final size:28
Alignment explanation
Indices: 1195104--1195161 Score: 75
Period size: 28 Copynumber: 2.1 Consensus size: 28
1195094 TATAATAATA
1195104 TTATTATTAT-TATTTTA-TTTATTTGTAT
1 TTATTA-TATGTATTTTATTTTATTT-TAT
*
1195132 TTATTATATGTTTTTTATTTTATTTTAT
1 TTATTATATGTATTTTATTTTATTTTAT
1195160 TT
1 TT
1195162 TATTTTTTAT
Statistics
Matches: 27, Mismatches: 1, Indels: 4
0.84 0.03 0.12
Matches are distributed among these distances:
27 3 0.11
28 17 0.63
29 7 0.26
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.74
Consensus pattern (28 bp):
TTATTATATGTATTTTATTTTATTTTAT
Found at i:1195148 original size:24 final size:23
Alignment explanation
Indices: 1195102--1195169 Score: 75
Period size: 24 Copynumber: 2.8 Consensus size: 23
1195092 TATATAATAA
1195102 TATTATTATTATTATTTTATTTATTT
1 TATT-TTATTA-TATTTT-TTTATTT
1195128 GTA-TTTATTATATGTTTTTTATTT
1 -TATTTTATTATAT-TTTTTTATTT
*
1195152 TATTTTATTTTATTTTTT
1 TATTTTATTATATTTTTT
1195170 ATTAATTCCA
Statistics
Matches: 38, Mismatches: 1, Indels: 8
0.81 0.02 0.17
Matches are distributed among these distances:
23 7 0.18
24 19 0.50
25 9 0.24
26 1 0.03
27 2 0.05
ACGTcount: A:0.22, C:0.00, G:0.03, T:0.75
Consensus pattern (23 bp):
TATTTTATTATATTTTTTTATTT
Found at i:1198957 original size:15 final size:15
Alignment explanation
Indices: 1198937--1198993 Score: 53
Period size: 15 Copynumber: 3.5 Consensus size: 15
1198927 AACCATGCAG
1198937 GGGGAATCTGTACCC
1 GGGGAATCTGTACCC
1198952 GGGGAATC-GATACCCC
1 GGGGAATCTG-TA-CCC
*
1198968 TGGGGGGAATCTGTTCCC
1 ---GGGGAATCTGTACCC
1198986 GGGGAATC
1 GGGGAATC
1198994 GATACCCCCT
Statistics
Matches: 35, Mismatches: 1, Indels: 12
0.73 0.02 0.25
Matches are distributed among these distances:
14 1 0.03
15 18 0.51
16 3 0.09
18 3 0.09
19 9 0.26
20 1 0.03
ACGTcount: A:0.19, C:0.25, G:0.37, T:0.19
Consensus pattern (15 bp):
GGGGAATCTGTACCC
Found at i:1198974 original size:34 final size:36
Alignment explanation
Indices: 1198936--1199021 Score: 149
Period size: 34 Copynumber: 2.4 Consensus size: 36
1198926 AAACCATGCA
1198936 GGGGGAATCTGTACCCGGGGAATCGATA-CCCCT-G
1 GGGGGAATCTGTACCCGGGGAATCGATACCCCCTGG
*
1198970 GGGGGAATCTGTTCCCGGGGAATCGATACCCCCTGG
1 GGGGGAATCTGTACCCGGGGAATCGATACCCCCTGG
1199006 GGGGGAATCTGTACCC
1 GGGGGAATCTGTACCC
1199022 CCTGGACAAT
Statistics
Matches: 48, Mismatches: 2, Indels: 2
0.92 0.04 0.04
Matches are distributed among these distances:
34 27 0.56
35 5 0.10
36 16 0.33
ACGTcount: A:0.19, C:0.27, G:0.36, T:0.19
Consensus pattern (36 bp):
GGGGGAATCTGTACCCGGGGAATCGATACCCCCTGG
Found at i:1198976 original size:19 final size:19
Alignment explanation
Indices: 1198952--1199014 Score: 55
Period size: 15 Copynumber: 3.4 Consensus size: 19
1198942 ATCTGTACCC
1198952 GGGGAATCGATACCCCTGG
1 GGGGAATCGATACCCCTGG
*
1198971 GGGGAATCTG-T-TCCC---
1 GGGGAATC-GATACCCCTGG
1198986 GGGGAATCGATACCCCCTGGG
1 GGGGAATCGATA-CCCCT-GG
1199007 GGGGAATC
1 GGGGAATC
1199015 TGTACCCCCT
Statistics
Matches: 34, Mismatches: 2, Indels: 14
0.68 0.04 0.28
Matches are distributed among these distances:
14 1 0.03
15 9 0.26
17 3 0.09
18 3 0.09
19 9 0.26
20 1 0.03
21 8 0.24
ACGTcount: A:0.19, C:0.25, G:0.38, T:0.17
Consensus pattern (19 bp):
GGGGAATCGATACCCCTGG
Found at i:1199010 original size:21 final size:21
Alignment explanation
Indices: 1198986--1199026 Score: 66
Period size: 21 Copynumber: 2.0 Consensus size: 21
1198976 ATCTGTTCCC
1198986 GGGGAATC-GATACCCCCTGGG
1 GGGGAATCTG-TACCCCCTGGG
1199007 GGGGAATCTGTACCCCCTGG
1 GGGGAATCTGTACCCCCTGG
1199027 ACAATCTGAT
Statistics
Matches: 19, Mismatches: 0, Indels: 2
0.90 0.00 0.10
Matches are distributed among these distances:
21 18 0.95
22 1 0.05
ACGTcount: A:0.17, C:0.29, G:0.37, T:0.17
Consensus pattern (21 bp):
GGGGAATCTGTACCCCCTGGG
Found at i:1202196 original size:21 final size:22
Alignment explanation
Indices: 1202158--1202200 Score: 70
Period size: 21 Copynumber: 2.0 Consensus size: 22
1202148 CCAGAATGGG
*
1202158 GGGAATCGGTACCCCCTTCATA
1 GGGAATCGATACCCCCTTCATA
1202180 GGGAATCGATA-CCCCTTCATA
1 GGGAATCGATACCCCCTTCATA
1202201 ATATTCAAAT
Statistics
Matches: 20, Mismatches: 1, Indels: 1
0.91 0.05 0.05
Matches are distributed among these distances:
21 10 0.50
22 10 0.50
ACGTcount: A:0.26, C:0.30, G:0.21, T:0.23
Consensus pattern (22 bp):
GGGAATCGATACCCCCTTCATA
Found at i:1202352 original size:34 final size:35
Alignment explanation
Indices: 1202312--1202397 Score: 147
Period size: 34 Copynumber: 2.5 Consensus size: 35
1202302 AAACCATGCA
1202312 GGGGGGAATCTGTACCCGGGGAATCGATA-CCCCT
1 GGGGGGAATCTGTACCCGGGGAATCGATACCCCCT
* *
1202346 GGGGGGAATCTGTTCCTGGGGAATCGATACCCCCT
1 GGGGGGAATCTGTACCCGGGGAATCGATACCCCCT
1202381 GGGGGGAATCTGTACCC
1 GGGGGGAATCTGTACCC
1202398 CTGGACAATC
Statistics
Matches: 47, Mismatches: 4, Indels: 1
0.90 0.08 0.02
Matches are distributed among these distances:
34 27 0.57
35 20 0.43
ACGTcount: A:0.19, C:0.26, G:0.36, T:0.20
Consensus pattern (35 bp):
GGGGGGAATCTGTACCCGGGGAATCGATACCCCCT
Found at i:1202353 original size:19 final size:19
Alignment explanation
Indices: 1202312--1202401 Score: 74
Period size: 15 Copynumber: 5.1 Consensus size: 19
1202302 AAACCATGCA
1202312 GGGGGGAATCTGTA-CCC-
1 GGGGGGAATCTGTACCCCT
1202329 --GGGGAATC-GATACCCCT
1 GGGGGGAATCTG-TACCCCT
*
1202346 GGGGGGAATCTGT--TCCT
1 GGGGGGAATCTGTACCCCT
1202363 --GGGGAATC-GATACCCCCT
1 GGGGGGAATCTG-TA-CCCCT
1202381 GGGGGGAATCTGTACCCCT
1 GGGGGGAATCTGTACCCCT
1202400 GG
1 GG
1202402 ACAATCTGAT
Statistics
Matches: 58, Mismatches: 2, Indels: 24
0.69 0.02 0.29
Matches are distributed among these distances:
14 2 0.03
15 19 0.33
16 3 0.05
17 3 0.05
18 3 0.05
19 16 0.28
20 11 0.19
21 1 0.02
ACGTcount: A:0.18, C:0.26, G:0.37, T:0.20
Consensus pattern (19 bp):
GGGGGGAATCTGTACCCCT
Found at i:1204999 original size:95 final size:95
Alignment explanation
Indices: 1204873--1205073 Score: 323
Period size: 95 Copynumber: 2.1 Consensus size: 95
1204863 ATATTATAAT
1204873 ATTATATATATACAATAAAGCTTGAGTTGTCCCTCTA-AAGCAATTGGTTAAACACCCCAACTTT
1 ATTATA-ATATACAATAAAGCTTGAGTTGTCCCTCTAGAA-CAATTGGTTAAACACCCCAACTTT
* *
1204937 ATGGATAAGATTCAGCTAGCCTGATAAAGGTG
64 ATGGATAAGATTCAGCTAGCCTAACAAAGGTG
* *
1204969 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGCACAATTGGTTAAACACCCCGACTTTAT
1 ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAACAATTGGTTAAACACCCCAACTTTAT
* *
1205034 GGATAATATTCAGCTAGCCTAACAGAGGTG
66 GGATAAGATTCAGCTAGCCTAACAAAGGTG
1205064 ATTATAATAT
1 ATTATAATAT
1205074 TGAGTTGTCC
Statistics
Matches: 98, Mismatches: 6, Indels: 3
0.92 0.06 0.03
Matches are distributed among these distances:
95 91 0.93
96 7 0.07
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.31
Consensus pattern (95 bp):
ATTATAATATACAATAAAGCTTGAGTTGTCCCTCTAGAACAATTGGTTAAACACCCCAACTTTAT
GGATAAGATTCAGCTAGCCTAACAAAGGTG
Found at i:1206385 original size:86 final size:86
Alignment explanation
Indices: 1206241--1207278 Score: 1321
Period size: 86 Copynumber: 12.1 Consensus size: 86
1206231 TTAAAGGAAC
* * * * * * * *
1206241 AATTCACAACATAACTCGAGGTGAAAAGGGTTATCTATCAATAAAACACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
* * *
1206306 ACTCAGCTCATAGGCATATCC
66 ATTCAGCTCAAAGGCATATCA
* * * *
1206327 AATTTACAACATAACTCAAGGCGAAAAGGATTATCTGTCAACAAAAAACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
1206392 ATTCAGCTCAAAGGCATATCA
66 ATTCAGCTCAAAGGCATATCA
* * * * * * * *
1206413 AATTTACAGTATAACTCAAGACAAGAATGGTTATCTGTGAAC-CAAGATCTTCGAGTTCAATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
*
1206477 AATCAGCTCAAAGGCATATCA
66 ATTCAGCTCAAAGGCATATCA
* * * ** *
1206498 AATTTACAGCATAGCTCAAGGAGAGAAGGGCTGGCTATCAACAAAAGACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
*
1206563 ATTCAGCTCAAAGGCACATCA
66 ATTCAGCTCAAAGGCATATCA
* * * *
1206584 AATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTTGAGTTCTATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
*
1206649 ATTCGGCTCAAAGGCATATCA
66 ATTCAGCTCAAAGGCATATCA
*
1206670 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
* *
1206734 ACTCAGCTCAAAGGCACATCA
66 ATTCAGCTCAAAGGCATATCA
* * * *
1206755 AATTTACAGAATAACTCAAGGCGATAAGGGATATCTGTCAAC-CAAGACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
* * *
1206819 ACTCAGCTCAAAGGCACATCC
66 ATTCAGCTCAAAGGCATATCA
* * * *
1206840 AATTTACAGCATAGCTCAAGGCGAGAAGGGTTATATGTCAATAAAAGACCTTCAAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
*
1206905 ATTCATCTCAAAGGCATATCA
66 ATTCAGCTCAAAGGCATATCA
* *
1206926 AACTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
* *
1206990 ACTCAGCTCAAAGGCACATCA
66 ATTCAGCTCAAAGGCATATCA
* * * * * *
1207011 AGTTTACAACATAGCTCAAGGTGAGAAGGGCTATCTGTCAACAAAAGACCTTCGAGTTCGATTGC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
* * *
1207076 ATTCAGCTTAAAGGTACATCA
66 ATTCAGCTCAAAGGCATATCA
* * *
1207097 AATTTACAGTATAACTCAAGGCGAGAAGGGTTATCTGTCACCAAAAGACCTTCGAGTTCGTTTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
*
1207162 ATTCAACTCAAAGGCATATCA
66 ATTCAGCTCAAAGGCATATCA
* * * ** * * *
1207183 AATTTTACAGCATAGCTCAGGGCAAGAAGGCCTATCTGTCAGC-AAATACCTTCGAGTTCGATTC
1 AA-TTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTA
* * *
1207247 CATCCAGCTCAAGGGCATGTCA
65 CATTCAGCTCAAAGGCATATCA
1207269 AATTTACAGC
1 AATTTACAGC
1207279 TTAGCTTAAG
Statistics
Matches: 830, Mismatches: 118, Indels: 9
0.87 0.12 0.01
Matches are distributed among these distances:
85 305 0.37
86 492 0.59
87 33 0.04
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (86 bp):
AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACAAAAGACCTTCGAGTTCGATTAC
ATTCAGCTCAAAGGCATATCA
Found at i:1206575 original size:171 final size:171
Alignment explanation
Indices: 1206241--1207278 Score: 1344
Period size: 171 Copynumber: 6.1 Consensus size: 171
1206231 TTAAAGGAAC
* * * * * * ** *
1206241 AATTCACAACATAACTCGAGGTGAAAAGGGTTATCTATCAATAAAACACCTTCGAGTTCGATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAA-CCAAGACCTTCGAGTTCGATTAC
* * * * * **
1206306 ACTCAGCTCATAGGCATATCCAATTTACAACATAACTCAAGGCGAAAAGGATTATCTGTCAACAA
65 ACTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAA
* *
1206371 AAAACCTTCGAGTTCGATTACATTCAGCTCAAAGGCATATCA
130 AAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
* * * * * * *
1206413 AATTTACAGTATAACTCAAGACAAGAATGGTTATCTGTGAACCAAGATCTTCGAGTTCAATTACA
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA
* * ** *
1206478 ATCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGAGAGAAGGGCTGGCTATCAACAAA
66 CTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA
1206543 AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
131 AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
* * * * *
1206584 AATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAAAGACCTTTGAGTTCTATTAC
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-CAAGACCTTCGAGTTCGATTAC
* * * * *
1206649 ATTCGGCTCAAAGGCATATCAAATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAAC-C
65 ACTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAA
*
1206713 AAGACCTTCGAGTTCGATTACACTCAGCTCAAAGGCACATCA
130 AAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
* * *
1206755 AATTTACAGAATAACTCAAGGCGATAAGGGATATCTGTCAACCAAGACCTTCGAGTTCGATTACA
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA
* * * * *
1206820 CTCAGCTCAAAGGCACATCCAATTTACAGCATAGCTCAAGGCGAGAAGGGTTATATGTCAATAAA
66 CTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA
* * *
1206885 AGACCTTCAAGTTCGATTACATTCATCTCAAAGGCATATCA
131 AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
*
1206926 AACTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA
* * * *
1206991 CTCAGCTCAAAGGCACATCAAGTTTACAACATAGCTCAAGGTGAGAAGGGCTATCTGTCAACAAA
66 CTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA
* * *
1207056 AGACCTTCGAGTTCGATTGCATTCAGCTTAAAGGTACATCA
131 AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
* *
1207097 AATTTACAGTATAACTCAAGGCGAGAAGGGTTATCTGTC-ACCAAAAGACCTTCGAGTTCGTTTA
1 AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACC--AAGACCTTCGAGTTCGATTA
* * * * * *
1207161 CATTCAACTCAAAGGCATATCAAATTTTACAGCATAGCTCAGGGCAAGAAGGCCTATCTGTCAGC
64 CACTCAGCTCAAAGGCATATCAAA-TTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAAC
* * * * **
1207226 -AAATACCTTCGAGTTCGATTCCATCCAGCTCAAGGGCATGTCA
128 AAAAGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
1207269 AATTTACAGC
1 AATTTACAGC
1207279 TTAGCTTAAG
Statistics
Matches: 752, Mismatches: 109, Indels: 10
0.86 0.13 0.01
Matches are distributed among these distances:
170 78 0.10
171 454 0.60
172 186 0.25
173 34 0.05
ACGTcount: A:0.35, C:0.22, G:0.18, T:0.24
Consensus pattern (171 bp):
AATTTACAGCATAACTCAAGGCGAGAAGGGTTATCTGTCAACCAAGACCTTCGAGTTCGATTACA
CTCAGCTCAAAGGCATATCAAATTTACAGCATAGCTCAAGGCGAGAAGGGCTATCTGTCAACAAA
AGACCTTCGAGTTCGATTACATTCAGCTCAAAGGCACATCA
Found at i:1207742 original size:2 final size:2
Alignment explanation
Indices: 1207735--1207767 Score: 66
Period size: 2 Copynumber: 16.5 Consensus size: 2
1207725 TTTATTATTT
1207735 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA T
1207768 TAATATAGTA
Statistics
Matches: 31, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 31 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:1207795 original size:27 final size:26
Alignment explanation
Indices: 1207764--1207817 Score: 63
Period size: 27 Copynumber: 2.0 Consensus size: 26
1207754 ATATATATAT
* *
1207764 ATATTAATATAGTATGATTTTTTGAAA
1 ATATTAATAGAGAATGA-TTTTTGAAA
**
1207791 ATATTTTTAGAGAATGATTTTTGAAA
1 ATATTAATAGAGAATGATTTTTGAAA
1207817 A
1 A
1207818 ACATATAATA
Statistics
Matches: 23, Mismatches: 4, Indels: 1
0.82 0.14 0.04
Matches are distributed among these distances:
26 10 0.43
27 13 0.57
ACGTcount: A:0.41, C:0.00, G:0.13, T:0.46
Consensus pattern (26 bp):
ATATTAATAGAGAATGATTTTTGAAA
Found at i:1207810 original size:14 final size:14
Alignment explanation
Indices: 1207777--1207817 Score: 50
Period size: 13 Copynumber: 3.1 Consensus size: 14
1207767 TTAATATAGT
*
1207777 ATGATTTTTTGAAA
1 ATGATTTTTAGAAA
*
1207791 AT-ATTTTTAGAGA
1 ATGATTTTTAGAAA
1207804 ATGATTTTT-GAAA
1 ATGATTTTTAGAAA
1207817 A
1 A
1207818 ACATATAATA
Statistics
Matches: 23, Mismatches: 3, Indels: 3
0.79 0.10 0.10
Matches are distributed among these distances:
13 15 0.65
14 8 0.35
ACGTcount: A:0.39, C:0.00, G:0.15, T:0.46
Consensus pattern (14 bp):
ATGATTTTTAGAAA
Found at i:1207924 original size:64 final size:67
Alignment explanation
Indices: 1207825--1207960 Score: 165
Period size: 65 Copynumber: 2.1 Consensus size: 67
1207815 AAAACATATA
* *
1207825 ATATACTTTTTAAAAATCTGTTTTTGAAAATATATA-ATATATTG-TTTTG-AAAACATTTTTAA
1 ATATACTTTTTAAAAATCTGTTTTTGAAAATATATATATA-ATGGTTTTTGAAAAACATTTTGAA
1207887 AAC
65 AAC
* * *
1207890 ATATAGTTTTTAAAAA-C-GATTTTTGGAAATATATATATAATGGTTTTTGAAAAACGTTTTGAA
1 ATATACTTTTTAAAAATCTG-TTTTTGAAAATATATATATAATGGTTTTTGAAAAACATTTTGAA
*
1207953 AAT
65 AAC
1207956 ATATA
1 ATATA
1207961 TAATATATAG
Statistics
Matches: 61, Mismatches: 6, Indels: 7
0.82 0.08 0.09
Matches are distributed among these distances:
63 1 0.02
64 19 0.31
65 23 0.38
66 18 0.30
ACGTcount: A:0.42, C:0.04, G:0.10, T:0.44
Consensus pattern (67 bp):
ATATACTTTTTAAAAATCTGTTTTTGAAAATATATATATAATGGTTTTTGAAAAACATTTTGAAA
AC
Found at i:1207926 original size:102 final size:101
Alignment explanation
Indices: 1207806--1207996 Score: 237
Period size: 102 Copynumber: 1.9 Consensus size: 101
1207796 TTTAGAGAAT
1207806 GATTTTTGAAAAACATATA-ATATACTTTTT-AAAAATCTGTTTTTG-AAA-ATATATAATATAT
1 GATTTTTGAAAAACATATATA-ATACTTTTTGAAAAA-C-G-TTTTGAAAATATATATAATATAT
* *
1207867 TGTTTTGAAAACATTTTTAAAACATATAGTTTTTAAAAAC
62 AGTTTTGAAAACATTTTAAAAACATATAGTTTTTAAAAAC
* * **
1207907 GATTTTTGGAAATATATATATAATGGTTTTTGAAAAACGTTTTGAAAATATATATAATATATAGT
1 GATTTTT-GAAAAACATATATAATACTTTTTGAAAAACGTTTTGAAAATATATATAATATATAGT
* *
1207972 TTTTAAAACATTTTAAAAATATATA
65 TTTGAAAACATTTTAAAAACATATA
1207997 TAATATATAA
Statistics
Matches: 77, Mismatches: 8, Indels: 9
0.82 0.09 0.10
Matches are distributed among these distances:
100 5 0.06
101 11 0.14
102 55 0.71
103 6 0.08
ACGTcount: A:0.44, C:0.04, G:0.08, T:0.43
Consensus pattern (101 bp):
GATTTTTGAAAAACATATATAATACTTTTTGAAAAACGTTTTGAAAATATATATAATATATAGTT
TTGAAAACATTTTAAAAACATATAGTTTTTAAAAAC
Found at i:1207944 original size:38 final size:36
Alignment explanation
Indices: 1207890--1208116 Score: 256
Period size: 36 Copynumber: 6.3 Consensus size: 36
1207880 TTTTTAAAAC
*
1207890 ATATAGTTTTTAAAAACGATTTTTGGAAATATATATAT
1 ATATAGTTTTTAAAAAC-A-TTTTGAAAATATATATAT
* *
1207928 A-ATGGTTTTTGAAAAACGTTTTGAAAATATATATAAT
1 ATATAGTTTTT-AAAAACATTTTGAAAATATATAT-AT
*
1207965 ATATAGTTTTT-AAAACATTTTAAAAATATATATAAT
1 ATATAGTTTTTAAAAACATTTTGAAAATATATAT-AT
*
1208001 ATATA-ATTTTAAAAA-A--TTGAAAATATATAT-T
1 ATATAGTTTTTAAAAACATTTTGAAAATATATATAT
1208032 ATATAGTTTTTATAAAAACATTTTTGAAAATATATAT-T
1 ATATAG-TTTT-TAAAAACA-TTTTGAAAATATATATAT
1208070 ATATAGTTTTTTAAAAACATTTTTGAAAATATATAT-T
1 ATATAG-TTTTTAAAAACA-TTTTGAAAATATATATAT
1208107 ATATAGTTTT
1 ATATAGTTTT
1208117 GATTTTTTAT
Statistics
Matches: 169, Mismatches: 9, Indels: 24
0.84 0.04 0.12
Matches are distributed among these distances:
31 6 0.04
33 16 0.09
34 6 0.04
35 6 0.04
36 51 0.30
37 43 0.25
38 41 0.24
ACGTcount: A:0.45, C:0.02, G:0.07, T:0.45
Consensus pattern (36 bp):
ATATAGTTTTTAAAAACATTTTGAAAATATATATAT
Found at i:1208025 original size:24 final size:25
Alignment explanation
Indices: 1207981--1208029 Score: 66
Period size: 24 Copynumber: 2.0 Consensus size: 25
1207971 TTTTTAAAAC
*
1207981 ATTTTAAAAATATATATAATATATA
1 ATTTTAAAAATATATAAAATATATA
1208006 ATTTTAAAAA-AT-TGAAAATATATA
1 ATTTTAAAAATATAT-AAAATATATA
1208030 TTATATAGTT
Statistics
Matches: 22, Mismatches: 1, Indels: 3
0.85 0.04 0.12
Matches are distributed among these distances:
23 1 0.05
24 11 0.50
25 10 0.45
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (25 bp):
ATTTTAAAAATATATAAAATATATA
Found at i:1209076 original size:2 final size:2
Alignment explanation
Indices: 1209069--1209141 Score: 146
Period size: 2 Copynumber: 36.5 Consensus size: 2
1209059 CCTTTAAAAC
1209069 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1209111 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1209142 ACGAAACTAC
Statistics
Matches: 71, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 71 1.00
ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49
Consensus pattern (2 bp):
AT
Found at i:1215770 original size:19 final size:18
Alignment explanation
Indices: 1215711--1215775 Score: 53
Period size: 19 Copynumber: 3.5 Consensus size: 18
1215701 AAATAATGTT
*
1215711 AAATAAATAAATAAAAAAT-
1 AAATAAA-AAAT-ATAAATC
* *
1215730 AAAAAAAAAATATAGATC
1 AAATAAAAAATATAAATC
1215748 AAATGAAAAAATATTAAAT-
1 AAAT-AAAAAATA-TAAATC
1215767 AAATAAAAA
1 AAATAAAAA
1215776 TAATAAAATA
Statistics
Matches: 38, Mismatches: 5, Indels: 7
0.76 0.10 0.14
Matches are distributed among these distances:
17 4 0.11
18 12 0.32
19 18 0.47
20 4 0.11
ACGTcount: A:0.75, C:0.02, G:0.03, T:0.20
Consensus pattern (18 bp):
AAATAAAAAATATAAATC
Found at i:1215774 original size:18 final size:17
Alignment explanation
Indices: 1215710--1215775 Score: 64
Period size: 15 Copynumber: 3.8 Consensus size: 17
1215700 TAAATAATGT
*
1215710 TAAATAAATAAATAA-A
1 TAAATAAATAAAAAATA
*
1215726 -AAATAAAAAAAAAATA
1 TAAATAAATAAAAAATA
*
1215742 TAGATCAAATGAAAAAATA
1 TAAAT-AAAT-AAAAAATA
1215761 TTAAATAAATAAAAA
1 -TAAATAAATAAAAA
1215776 TAATAAAATA
Statistics
Matches: 40, Mismatches: 5, Indels: 8
0.75 0.09 0.15
Matches are distributed among these distances:
15 12 0.30
16 1 0.03
17 3 0.08
18 8 0.20
19 12 0.30
20 4 0.10
ACGTcount: A:0.74, C:0.02, G:0.03, T:0.21
Consensus pattern (17 bp):
TAAATAAATAAAAAATA
Done.