Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007174.1 Hibiscus syriacus cultivar Beakdansim tig00018829_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77728

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5389--5416
2
14.0
2
100
0
56
50
0
0
50
1.00
12126--12156
12
2.6
12
100
0
62
38
0
51
9
1.35
17596--17820
7
31.7
7
69
17
112
40
4
4
50
1.41
17596--17700
39
2.8
36
75
20
108
38
2
5
53
1.40
17611--17849
31
7.6
30
71
20
134
39
4
5
51
1.43
17592--17866
36
7.9
37
69
19
120
40
4
4
51
1.42
18287--18368
33
2.5
32
82
5
85
65
17
10
6
1.43
19637--19683
21
2.1
23
84
7
62
55
0
10
34
1.35
34809--34854
23
1.9
25
91
8
78
10
26
15
47
1.78
37338--37419
29
2.8
29
94
1
137
32
14
9
42
1.79
42100--42181
29
2.8
29
94
1
137
32
14
9
42
1.79
50178--50229
27
2.0
26
85
11
70
40
3
1
53
1.30
55494--55551
20
2.7
20
81
10
62
31
20
22
25
1.98
55514--55551
20
1.9
20
94
0
67
31
21
23
23
1.98
59808--59929
63
1.9
63
96
0
226
36
10
23
28
1.88
59998--60076
35
2.3
35
100
0
158
36
21
18
22
1.95
60010--60074
20
3.5
20
70
20
68
36
18
20
24
1.94
60935--61028
31
3.0
31
87
0
143
24
17
24
34
1.96
66922--66976
20
2.7
19
75
8
56
80
3
12
3
0.98
68539--68577
2
19.5
2
94
0
60
43
0
5
51
1.24
72659--72776
25
4.8
25
94
4
204
28
13
20
37
1.91
72853--72899
3
17.0
3
79
20
50
70
0
0
29
0.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72847--72910
32
2.0
32
87
0
92
71
0
0
28
0.86
72848--72905
13
4.5
13
84
4
73
72
0
0
27
0.85
72868--72908
12
3.3
12
83
6
55
75
0
0
24
0.80
72867--72910
22
2.0
22
86
8
63
77
0
0
22
0.77
74357--74434
11
7.1
11
69
9
52
5
15
0
79
0.90
74398--74423
10
2.6
10
100
0
52
0
23
0
76
0.78

Tables:   1

The End!