genome.fa.s7175.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007175.1 Hibiscus syriacus cultivar Beakdansim tig00018833_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  129687

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
978--1032	24	2.3	24	78	6	58	23	27	32	16	1.96
4941--5003	31	2.0	32	87	3	92	34	4	7	52	1.52
6815--6891	31	2.5	31	83	10	95	45	3	3	46	1.39
21473--21499	9	3.0	9	100	0	54	55	11	11	22	1.66
22401--22470	24	2.8	24	82	10	77	37	4	2	55	1.34
24484--24528	23	2.0	23	81	0	54	44	0	6	48	1.29
24603--24680	26	3.1	25	72	24	74	47	6	1	44	1.36
28400--28437	19	2.0	19	100	0	76	31	36	21	10	1.87
28452--28522	32	2.2	32	92	0	115	30	30	29	8	1.87
28510--28604	29	3.3	29	95	0	163	13	30	32	23	1.93
28639--28734	49	2.0	48	93	6	167	18	38	18	23	1.93
28645--28745	49	2.1	48	90	5	159	20	38	17	22	1.93
28956--28992	16	2.2	18	85	9	51	37	0	5	56	1.22
29053--29158	41	2.5	41	77	10	108	42	0	9	48	1.35
29378--29407	14	2.1	14	100	0	60	40	0	6	53	1.27
31545--31577	17	1.9	17	100	0	66	48	9	6	36	1.60
31544--31594	14	3.4	14	82	12	57	45	7	7	39	1.62
31572--31615	21	2.1	21	86	0	61	45	4	9	40	1.56
31582--31615	11	3.2	11	83	8	52	47	5	8	38	1.59
31562--31626	14	5.2	13	76	17	50	46	7	7	38	1.61
31712--31807	11	7.9	12	75	14	81	50	4	2	43	1.33
31774--31986	12	15.2	13	69	23	82	44	10	1	43	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31715--31915	26	8.2	25	73	16	111	46	8	1	42	1.45
31768--31986	98	2.2	98	96	1	404	44	10	1	43	1.48
31982--32008	7	3.9	7	100	0	54	14	14	14	55	1.70
32081--32128	14	3.6	14	81	16	66	47	16	0	35	1.47
32080--32128	25	2.0	25	95	0	89	46	16	0	36	1.47
32080--32138	25	2.6	22	86	10	75	49	13	0	37	1.43
32080--32149	21	3.1	22	80	12	63	50	11	0	38	1.39
34329--34429	45	2.3	42	83	5	130	49	9	0	39	1.43
34405--34458	28	1.9	28	96	0	99	57	12	0	29	1.36
34400--34465	28	2.4	28	85	10	98	56	10	0	33	1.34
34435--34483	21	2.3	21	85	3	71	53	16	0	30	1.43
35095--35204	30	3.7	30	90	0	184	10	18	47	23	1.80
35211--35293	29	2.9	29	98	0	157	8	27	44	19	1.79
39971--40023	17	3.1	16	84	10	61	43	5	7	43	1.56
39997--40054	25	2.3	25	100	0	116	41	3	6	48	1.47
40052--40084	17	1.9	17	93	0	57	33	3	6	57	1.38
41875--41916	16	2.6	17	81	11	61	47	0	0	52	1.00
44431--44461	16	1.9	16	93	0	53	38	12	16	32	1.86
47346--47392	22	2.2	21	77	7	51	40	2	4	53	1.32
49708--49753	20	2.3	20	78	14	51	39	4	6	50	1.48
50609--50659	2	25.5	2	95	0	93	47	0	1	50	1.12
57066--57182	59	2.0	60	93	3	202	59	4	9	26	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
58197--58235	20	1.9	21	84	5	53	56	7	0	35	1.28
60878--60950	24	3.0	24	84	7	69	12	15	23	49	1.78
60888--60940	14	4.1	14	79	18	69	9	15	24	50	1.73
60895--60950	24	2.3	24	96	0	103	10	12	21	55	1.67
62046--62112	16	4.1	16	86	3	89	8	11	22	56	1.63
62182--62214	16	2.1	16	100	0	66	6	12	24	57	1.57
63492--63549	29	2.0	29	93	0	98	32	1	12	53	1.48
64621--64679	3	19.7	3	73	13	50	30	3	3	62	1.28
66751--66794	22	2.0	22	81	0	52	27	4	15	52	1.63
71804--71834	15	2.1	15	94	5	55	35	6	32	25	1.82
72419--72517	35	2.8	35	82	8	112	35	18	11	35	1.86
72482--72794	107	3.0	108	89	5	473	31	15	12	41	1.84
72961--73036	30	2.6	30	85	8	95	31	13	13	42	1.82
72975--73036	30	2.1	30	93	0	106	33	12	12	40	1.82
73057--73199	26	5.5	27	67	18	81	30	13	11	44	1.79
73575--73638	28	2.3	28	86	0	92	32	17	10	39	1.84
73805--74024	40	5.2	40	70	16	124	23	30	20	26	1.98
73646--74036	134	3.0	133	87	5	546	24	30	19	25	1.98
74231--74287	3	18.7	3	75	10	53	31	3	3	61	1.30
80479--80537	23	2.5	25	84	15	81	47	0	0	52	1.00
87466--87511	23	2.0	22	91	4	74	19	2	26	52	1.58
89544--89586	21	2.0	21	95	0	77	39	11	13	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90472--90616	57	2.5	58	84	3	195	42	6	17	33	1.76
96104--96136	2	16.5	2	100	0	66	48	0	51	0	1.00
103559--103651	31	3.0	32	72	16	88	45	3	4	47	1.38
122093--122132	21	1.9	21	84	0	53	10	5	7	77	1.11

Tables:   1

The End!