genome.fa.s7178.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007178.1 Hibiscus syriacus cultivar Beakdansim tig00018853_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100860

Tables:   1   

This is table  1  of  1  ( 41 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6182--6206	2	12.5	2	100	0	50	48	0	52	0	1.00
6518--6551	17	1.9	18	88	5	52	52	2	2	41	1.31
8880--8943	23	2.8	23	87	0	83	26	21	17	34	1.95
10514--10562	20	2.4	21	75	6	55	38	8	20	32	1.82
11098--11137	11	3.6	11	83	10	55	70	0	0	30	0.88
11096--11137	21	2.0	22	95	4	77	69	0	0	30	0.89
11096--11136	10	3.6	12	78	21	52	70	0	0	29	0.87
12069--12109	18	2.3	18	95	0	73	19	17	14	48	1.81
14118--14165	22	2.1	23	88	3	71	37	14	8	39	1.76
14232--14267	13	2.8	13	86	0	54	44	5	0	50	1.25
29593--29633	21	1.9	22	90	5	66	73	4	4	17	1.19
29866--29991	63	2.0	63	95	3	227	37	18	20	23	1.94
29876--29978	31	3.3	31	67	18	88	38	16	22	22	1.92
31177--31638	105	4.4	105	99	0	888	23	17	25	33	1.96
42977--43017	21	1.9	22	90	5	66	73	4	4	17	1.19
43248--43373	63	2.0	63	95	3	227	37	18	20	23	1.94
43258--43360	31	3.3	31	67	18	88	38	16	22	22	1.92
49309--49515	89	2.3	89	81	5	231	41	10	7	41	1.67
49352--49515	90	1.8	89	82	3	213	42	9	6	41	1.64
57696--57887	75	2.5	75	87	3	251	23	32	23	19	1.97
63676--63725	23	2.3	22	82	6	57	18	40	22	20	1.92
66297--66503	75	2.7	75	86	3	263	23	31	23	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77622--77661	21	2.0	20	85	5	53	37	0	12	50	1.41
77843--77879	17	2.2	17	86	13	51	54	0	8	37	1.30
82676--82733	2	29.5	2	96	3	109	51	0	0	48	1.00
83182--83224	18	2.2	19	84	16	52	46	2	0	51	1.13
86333--87309	144	6.8	144	81	3	971	16	23	19	40	1.91
94939--94999	24	2.5	24	97	0	113	49	1	27	21	1.59
96050--96094	20	2.2	20	80	0	54	22	31	20	26	1.98
96057--96099	20	2.2	20	91	0	68	18	27	23	30	1.98
96132--96243	20	5.6	20	91	2	163	39	16	18	25	1.91
96128--96336	20	10.6	20	83	7	135	33	21	20	24	1.97
96128--96263	60	2.3	60	78	7	150	36	18	19	25	1.95
96226--96338	38	2.9	39	78	5	111	28	26	23	22	1.99
96381--96448	20	3.4	20	91	0	109	22	20	25	32	1.98
96596--96645	18	2.8	18	93	0	82	46	6	16	32	1.71
98353--98457	19	5.4	20	90	3	144	50	20	16	12	1.77
98810--98851	22	1.9	22	90	0	66	23	16	35	23	1.95
99031--99121	20	4.6	20	82	5	103	26	19	26	27	1.99
99024--99121	40	2.5	40	86	0	133	27	20	25	26	1.99
99113--99164	21	2.4	22	74	6	61	36	19	25	19	1.95

Tables:   1

The End!