genome.fa.s7182.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007182.1 Hibiscus syriacus cultivar Beakdansim tig00018874_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  121377

Tables:   1   

This is table  1  of  1  ( 44 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56737--56761	10	2.5	10	100	0	50	52	12	0	36	1.39
81107--81143	15	2.5	15	91	4	58	45	0	0	54	1.00
84819--84846	12	2.3	12	100	0	56	42	0	17	39	1.50
84965--85010	9	4.8	10	76	10	51	23	4	4	67	1.27
84965--85010	19	2.4	19	85	7	58	23	4	4	67	1.27
86074--86105	10	3.3	10	95	4	57	37	0	0	62	0.95
87773--87824	25	2.1	24	86	10	70	53	7	17	21	1.68
87928--88069	44	3.2	43	90	4	212	26	21	7	45	1.77
89379--89432	18	3.0	18	94	0	90	18	46	16	18	1.85
89411--89452	13	3.3	13	86	6	68	16	45	21	16	1.86
89467--89533	29	2.3	29	84	5	82	23	10	25	40	1.86
93862--93959	42	2.3	42	94	0	169	46	14	25	13	1.80
94942--95171	20	11.5	20	80	5	214	37	25	17	19	1.93
95864--95910	24	2.0	24	87	8	69	25	14	21	38	1.92
96085--96109	12	2.1	12	100	0	50	72	0	28	0	0.86
98405--98613	19	11.7	19	79	16	250	46	17	21	14	1.84
98405--98613	72	2.9	71	86	7	280	46	17	21	14	1.84
98391--98607	105	2.1	102	87	10	305	47	17	21	13	1.83
98584--98699	53	2.2	52	86	3	160	18	23	18	38	1.93
98622--98708	19	4.8	19	82	15	121	13	21	16	48	1.80
98807--98843	14	2.6	14	91	0	65	45	21	0	32	1.52
100751--100923	19	9.6	19	78	12	159	45	23	20	10	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
100845--100901	14	3.7	14	75	20	51	43	22	22	10	1.84
100826--100918	33	2.8	33	95	0	168	46	21	21	10	1.81
100785--100923	52	2.7	52	74	8	147	46	23	21	9	1.80
100935--100993	14	3.9	14	76	20	64	6	16	28	47	1.72
100919--101042	33	3.7	33	91	1	185	8	17	27	45	1.78
100919--101010	19	5.4	18	72	24	83	7	17	28	46	1.75
100968--101024	14	3.7	14	72	20	51	8	22	24	43	1.81
101090--101453	92	4.1	87	92	5	472	44	19	13	22	1.85
101140--101453	92	3.4	93	98	1	605	44	19	13	22	1.85
103139--103202	20	3.2	20	82	4	92	46	15	25	12	1.81
103137--103201	21	3.1	21	82	4	96	47	15	26	10	1.78
103243--103299	14	3.7	14	70	20	51	10	24	21	43	1.83
103227--103306	33	2.4	33	93	0	133	10	21	21	47	1.79
103287--103360	21	3.5	21	80	7	96	14	20	17	47	1.83
103440--103510	33	2.2	33	94	0	124	47	16	23	11	1.79
103889--104081	20	9.6	20	83	5	228	19	18	26	34	1.95
108939--109545	225	2.7	225	89	2	907	37	13	16	32	1.88
109543--109890	128	2.7	132	78	7	342	33	14	11	40	1.82
110493--110541	12	4.1	12	78	5	55	10	30	0	59	1.31
113304--113554	138	1.8	137	89	4	398	29	12	17	39	1.87
116444--116504	21	2.8	21	78	14	61	32	26	24	16	1.96
116466--116510	23	2.0	23	90	0	72	28	31	22	17	1.97

Tables:   1

The End!