genome.fa.s7185.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007185.1 Hibiscus syriacus cultivar Beakdansim tig00018903_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75734

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1745--1820	29	2.5	31	75	21	81	25	19	2	52	1.59
2975--3021	18	2.6	18	96	0	85	12	25	27	34	1.92
6777--6801	4	6.2	4	100	0	50	24	0	0	76	0.80
11265--11305	21	1.9	22	85	14	59	0	43	2	53	1.13
12173--12349	89	2.0	89	98	0	345	24	15	22	37	1.93
12784--12846	31	2.0	31	96	0	117	22	17	6	53	1.65
14646--14730	41	2.0	44	93	6	149	36	12	15	35	1.86
21514--21574	10	6.3	9	76	10	50	16	27	29	26	1.97
21562--21609	14	3.4	14	82	0	60	16	47	22	12	1.80
22519--22595	31	2.5	31	78	2	82	15	27	29	27	1.96
22519--22642	63	2.0	63	80	6	144	17	28	28	25	1.98
24570--24626	26	2.2	26	87	0	78	19	14	1	64	1.36
33265--33352	37	2.4	37	86	1	124	25	36	15	22	1.94
33324--33387	24	2.4	26	80	20	78	18	43	15	21	1.87
33333--33396	24	2.7	24	90	4	103	21	40	17	20	1.91
35999--36047	23	2.2	23	82	7	57	51	4	2	42	1.32
35997--36045	21	2.3	20	80	13	53	53	4	2	40	1.32
42585--42888	122	2.5	122	80	4	348	29	14	9	47	1.75
43227--43275	25	2.0	24	88	4	71	22	28	14	34	1.93
50403--50480	23	3.4	23	85	3	95	12	21	14	51	1.75
50498--50525	12	2.3	12	100	0	56	7	14	14	64	1.48
52403--52524	50	2.4	51	87	4	167	27	14	22	34	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
53169--53216	3	16.3	3	80	4	53	31	2	33	33	1.70
53165--53203	20	2.0	20	89	0	60	28	2	30	38	1.70
60535--60586	18	3.1	17	83	5	61	61	0	1	36	1.07
61166--61239	37	2.0	37	84	5	96	50	1	4	44	1.29
61384--61421	20	1.9	20	88	0	58	21	26	10	42	1.85
66249--66281	16	2.1	16	94	0	57	45	3	12	39	1.57
66779--66835	30	1.9	30	88	0	87	29	7	5	57	1.47
66817--66973	74	2.1	74	85	3	210	35	5	3	56	1.40
67302--67341	20	2.0	20	85	5	53	57	0	2	40	1.12
67716--68569	428	2.0	425	96	0	1555	32	14	16	37	1.88
68695--68732	16	2.4	16	95	0	67	2	42	0	55	1.14
71852--71911	31	1.9	31	83	6	77	46	1	3	48	1.28
74158--74223	30	2.3	27	82	12	78	46	1	6	45	1.37

Tables:   1

The End!