Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007186.1 Hibiscus syriacus cultivar Beakdansim tig00018924_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  156055

Tables:   1   

This is table  1  of  1  ( 45 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1475--1513
6
6.2
6
85
8
51
46
17
17
17
1.85
3268--3307
20
2.0
21
85
9
57
60
12
10
17
1.59
7153--7199
3
15.7
3
78
8
51
59
4
2
34
1.29
8476--8505
13
2.3
13
94
0
51
33
36
0
30
1.58
15542--15770
111
2.1
111
87
3
327
36
18
16
28
1.92
16263--16300
11
3.4
11
83
16
51
42
2
0
55
1.14
21886--22243
45
8.0
45
88
2
425
30
19
9
40
1.83
22712--22915
95
2.2
96
84
4
263
24
24
17
33
1.96
35873--36102
112
2.1
111
89
0
352
36
18
16
29
1.92
36671--36709
20
2.0
19
85
5
51
20
23
7
48
1.75
42650--42689
21
2.0
20
85
5
53
37
20
15
27
1.92
57337--57518
101
1.8
100
92
1
310
23
18
29
29
1.97
63141--63352
112
1.9
111
85
0
289
36
17
14
31
1.89
64904--66063
596
1.9
596
95
0
2104
29
20
14
35
1.92
69140--69371
112
2.1
111
86
2
313
36
20
16
26
1.94
74350--74389
14
2.9
14
96
3
73
80
0
15
5
0.88
74369--74433
4
15.8
4
90
9
96
76
0
21
1
0.86
79321--79359
21
1.9
20
89
5
60
66
0
0
33
0.92
80461--80499
20
2.0
19
90
5
60
69
0
0
30
0.89
84984--85067
29
2.9
29
94
0
141
25
19
5
50
1.70
84997--85067
15
4.9
14
76
6
79
22
19
7
50
1.71
85515--85639
62
2.0
62
93
0
214
38
12
16
32
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
86351--86397
2
23.5
2
100
0
94
51
0
0
48
1.00
87188--87224
16
2.2
17
90
4
58
54
8
13
24
1.66
93650--93699
20
2.5
20
86
0
64
34
20
12
34
1.89
96039--99364
4
832.8
4
94
3
5485
47
24
1
25
1.61
102218--102291
24
3.1
24
94
0
121
21
16
21
40
1.91
102311--102342
2
16.0
2
100
0
64
50
0
0
50
1.00
103575--103632
17
3.5
17
69
21
59
60
8
6
24
1.51
103579--103628
15
3.1
16
72
16
57
60
8
8
24
1.52
114550--114633
42
2.0
42
85
0
114
10
23
29
35
1.89
126476--126503
5
5.6
5
100
0
56
82
0
0
17
0.68
128034--128068
15
2.3
15
90
0
52
71
2
17
8
1.23
130295--130515
102
2.2
102
83
1
273
27
15
23
33
1.95
131129--131263
67
2.0
68
97
1
254
34
12
7
45
1.70
137587--137647
27
2.5
24
86
10
79
52
1
3
42
1.27
137587--137663
25
3.0
26
81
11
88
49
1
3
45
1.28
138292--138321
2
15.0
2
100
0
60
0
50
0
50
1.00
138321--138361
2
20.5
2
100
0
82
48
0
0
51
1.00
143056--143111
24
2.2
26
84
15
82
44
19
3
32
1.68
143666--144014
156
2.2
157
88
3
517
39
10
17
32
1.83
149993--150035
20
2.1
21
86
4
61
34
0
20
44
1.52
153370--153396
2
13.5
2
100
0
54
51
0
0
48
1.00
153541--153668
67
1.9
65
88
3
193
54
21
4
19
1.62
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
155281--155942
6
113.8
6
85
11
884
32
0
17
49
1.51

Tables:   1

The End!