Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007187.1 Hibiscus syriacus cultivar Beakdansim tig00018929_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 192224
ACGTcount: A:0.32, C:0.18, G:0.18, T:0.33
Found at i:530 original size:22 final size:22
Alignment explanation
Indices: 503--552 Score: 91
Period size: 22 Copynumber: 2.3 Consensus size: 22
493 GTTGCGATTT
503 TCGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
*
525 TTGTTGCGATAGTCTACAGTTG
1 TCGTTGCGATAGTCTACAGTTG
547 TCGTTG
1 TCGTTG
553 TGATTTTCCA
Statistics
Matches: 26, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
22 26 1.00
ACGTcount: A:0.16, C:0.16, G:0.28, T:0.40
Consensus pattern (22 bp):
TCGTTGCGATAGTCTACAGTTG
Found at i:590 original size:76 final size:76
Alignment explanation
Indices: 450--591 Score: 223
Period size: 75 Copynumber: 1.9 Consensus size: 76
440 TTGCATTTCG
* **
450 TGTTGCGATAGTCTAACAGTTGTCGTTGCGATTTTCTAAATTCGTTGCGATTTTCGTTGCGATAG
1 TGTTGCGATAGTCTAACAGTTGTCGTTGCGATTTTCCAAATTCGTTGCGAAATTCGTTGCGATAG
515 TCTACAGTTGT
66 TCTACAGTTGT
* *
526 TGTTGCGATAGTCT-ACAGTTGTCGTTGTGATTTTCCAAATTCGTTGCGAAAATTCGTTGTGATA
1 TGTTGCGATAGTCTAACAGTTGTCGTTGCGATTTTCCAAATTCGTTGCG-AAATTCGTTGCGATA
590 GT
65 GT
592 TAAAAAAAAG
Statistics
Matches: 60, Mismatches: 5, Indels: 2
0.90 0.07 0.03
Matches are distributed among these distances:
75 32 0.53
76 28 0.47
ACGTcount: A:0.20, C:0.15, G:0.24, T:0.42
Consensus pattern (76 bp):
TGTTGCGATAGTCTAACAGTTGTCGTTGCGATTTTCCAAATTCGTTGCGAAATTCGTTGCGATAG
TCTACAGTTGT
Found at i:1348 original size:22 final size:22
Alignment explanation
Indices: 1320--1409 Score: 93
Period size: 22 Copynumber: 4.3 Consensus size: 22
1310 AATTTGGAAA
1320 ATCGCAACGAAAACTGTAGACT
1 ATCGCAACGAAAACTGTAGACT
1342 ATCGCAAC-AACAACTGTA-ACT
1 ATCGCAACGAA-AACTGTAGACT
* * *
1363 ATCGCAACG--AA-TTTGGA-A
1 ATCGCAACGAAAACTGTAGACT
*
1381 ATCGCAACGACAACTGTAGACT
1 ATCGCAACGAAAACTGTAGACT
1403 ATCGCAA
1 ATCGCAA
1410 TGCGAAATGC
Statistics
Matches: 55, Mismatches: 6, Indels: 14
0.73 0.08 0.19
Matches are distributed among these distances:
18 11 0.20
19 3 0.05
20 2 0.04
21 17 0.31
22 22 0.40
ACGTcount: A:0.40, C:0.24, G:0.17, T:0.19
Consensus pattern (22 bp):
ATCGCAACGAAAACTGTAGACT
Found at i:4983 original size:6 final size:6
Alignment explanation
Indices: 4972--4997 Score: 52
Period size: 6 Copynumber: 4.3 Consensus size: 6
4962 TTGATTTTTT
4972 TTATAA TTATAA TTATAA TTATAA TT
1 TTATAA TTATAA TTATAA TTATAA TT
4998 TATTATATTT
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 20 1.00
ACGTcount: A:0.46, C:0.00, G:0.00, T:0.54
Consensus pattern (6 bp):
TTATAA
Found at i:13946 original size:2 final size:2
Alignment explanation
Indices: 13939--13967 Score: 58
Period size: 2 Copynumber: 14.5 Consensus size: 2
13929 AGATATCTTC
13939 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
13968 ATACATTATA
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 27 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:31349 original size:22 final size:21
Alignment explanation
Indices: 31324--31366 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
31314 TTTATTATAT
**
31324 ATATTTATGAATATATATAAAA
1 ATATTTAACAATATA-ATAAAA
31346 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
31367 GAAAAATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:32330 original size:28 final size:27
Alignment explanation
Indices: 32274--32330 Score: 69
Period size: 27 Copynumber: 2.1 Consensus size: 27
32264 GCTGTTGTTT
*
32274 TCTCTGTTTTTTTTTCGGTTCTATTTC
1 TCTCTGTTTTTTTTTCGGTTCTATGTC
* * *
32301 TCTCTTTTTTTTTTTCTGTTTCTGTGTC
1 TCTCTGTTTTTTTTTC-GGTTCTATGTC
32329 TC
1 TC
32331 GTTCTGTCTC
Statistics
Matches: 25, Mismatches: 4, Indels: 1
0.83 0.13 0.03
Matches are distributed among these distances:
27 15 0.60
28 10 0.40
ACGTcount: A:0.02, C:0.19, G:0.11, T:0.68
Consensus pattern (27 bp):
TCTCTGTTTTTTTTTCGGTTCTATGTC
Found at i:32731 original size:3 final size:3
Alignment explanation
Indices: 32723--32882 Score: 230
Period size: 3 Copynumber: 52.7 Consensus size: 3
32713 TTATTTATTA
* *
32723 AAT AAT AAT AAT AAT ATAT AAT ATT AAT AAT AAT AAT AAAT ACT AAT
1 AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT AAT AAT -AAT AAT AAT
** *
32770 AAT AAT AAT AAT AAT AAT AAT AAT GCT AAT AAT AAT AAT AAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
32818 AAT AAT AAT AAT AAT AAT AAT AAT ATT AAT AAT GAT AAT AAT AAT ATT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
32866 AAT AAT AAT AAT AAT AA
1 AAT AAT AAT AAT AAT AA
32883 AATGGATAAA
Statistics
Matches: 139, Mismatches: 16, Indels: 4
0.87 0.10 0.03
Matches are distributed among these distances:
3 133 0.96
4 6 0.04
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.35
Consensus pattern (3 bp):
AAT
Found at i:33277 original size:113 final size:113
Alignment explanation
Indices: 33040--33675 Score: 1002
Period size: 113 Copynumber: 5.5 Consensus size: 113
33030 CTCTCCAAAT
* *
33040 AAGTTCTTCTTATTATGAACTTTTTCTTCCTTCTTCAGATGAGTTCTTCTCATTCATGAACTTTC
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATT-ATGAACTTTC
* ** * * * * * ** *
33105 TTTGGCCATGTTGATCCATCAAATGATGAATTTAAACAAAAAGTTGAAC
65 TCTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
33154 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
*
33219 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGTAAAAGGTTGAAC
66 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
*
33267 AAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
33332 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
66 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
33380 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
33445 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
66 CTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
33493 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTC
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-
* * * * *
33558 TTCCTCTGGAAAAGAATGATCCATCAAGTGATGAATTCAAGCAAAAAGTTGAAC
62 TT-CTCTGGAAAAG-ATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
33612 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGACGAGTTCTTCTCATTATGAACT
1 AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACT
33676 CTACCTTGCA
Statistics
Matches: 494, Mismatches: 22, Indels: 7
0.94 0.04 0.01
Matches are distributed among these distances:
113 310 0.63
114 52 0.11
116 21 0.04
117 2 0.00
118 11 0.02
119 98 0.20
ACGTcount: A:0.28, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
AAGTTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
CTGGAAAAGATGATCCACCAAATGATGGATTCAGGCAAAAGGTTGAAC
Found at i:34435 original size:50 final size:50
Alignment explanation
Indices: 34362--35011 Score: 1183
Period size: 50 Copynumber: 12.9 Consensus size: 50
34352 CCTACCAAAC
34362 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
34412 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
34462 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
*
34512 CAGATCAGATAACTCAAAGAACACTTCTAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
*
34562 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA--TTCTGTCTAAT
34614 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
* *
34664 CAGATCAGATAACTCAAAGAACACTTCTAGAAGATGCTATGTTCTGTCCAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA--TTCTGTCTAAT
* *
34716 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGTTCTGTCCAAC
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTA--TTCTGTCTAAT
*
34768 CAGATTAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
34818 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
34868 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
34918 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
34968 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTG
1 CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTG
35012 CACATATAAA
Statistics
Matches: 584, Mismatches: 12, Indels: 8
0.97 0.02 0.01
Matches are distributed among these distances:
50 437 0.75
52 147 0.25
ACGTcount: A:0.38, C:0.22, G:0.14, T:0.26
Consensus pattern (50 bp):
CAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTCTGTCTAAT
Found at i:35615 original size:16 final size:18
Alignment explanation
Indices: 35576--35621 Score: 69
Period size: 19 Copynumber: 2.6 Consensus size: 18
35566 AATAGAAAAG
35576 AATAAATTGAATTTCCAAA
1 AATAAATTGAATTTCC-AA
35595 AATAAATTGAATTT-C-A
1 AATAAATTGAATTTCCAA
35611 AATAAATTGAA
1 AATAAATTGAA
35622 CTTGAAATAG
Statistics
Matches: 27, Mismatches: 0, Indels: 3
0.90 0.00 0.10
Matches are distributed among these distances:
16 12 0.44
18 1 0.04
19 14 0.52
ACGTcount: A:0.54, C:0.07, G:0.07, T:0.33
Consensus pattern (18 bp):
AATAAATTGAATTTCCAA
Found at i:35629 original size:16 final size:16
Alignment explanation
Indices: 35594--35630 Score: 56
Period size: 16 Copynumber: 2.3 Consensus size: 16
35584 GAATTTCCAA
*
35594 AAATAAATTGAATTTC
1 AAATAAATTGAACTTC
*
35610 AAATAAATTGAACTTG
1 AAATAAATTGAACTTC
35626 AAATA
1 AAATA
35631 GATAGAATTG
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
16 19 1.00
ACGTcount: A:0.54, C:0.05, G:0.08, T:0.32
Consensus pattern (16 bp):
AAATAAATTGAACTTC
Found at i:35961 original size:7 final size:7
Alignment explanation
Indices: 35949--36000 Score: 56
Period size: 7 Copynumber: 7.6 Consensus size: 7
35939 CCTTGACCCC
35949 TCTTTTT
1 TCTTTTT
35956 TCTTTTT
1 TCTTTTT
*
35963 T-TCCTTT
1 TCT-TTTT
35970 TCTTTTT
1 TCTTTTT
35977 T-TTTTT
1 TCTTTTT
35983 T-TTTTT
1 TCTTTTT
35989 CTCTTTTT
1 -TCTTTTT
35997 TCTT
1 TCTT
36001 CTTCAAGCAT
Statistics
Matches: 39, Mismatches: 2, Indels: 8
0.80 0.04 0.16
Matches are distributed among these distances:
6 12 0.31
7 21 0.54
8 6 0.15
ACGTcount: A:0.00, C:0.15, G:0.00, T:0.85
Consensus pattern (7 bp):
TCTTTTT
Found at i:35998 original size:9 final size:9
Alignment explanation
Indices: 35948--35999 Score: 51
Period size: 8 Copynumber: 6.2 Consensus size: 9
35938 ACCTTGACCC
35948 CTCTTTTTT
1 CTCTTTTTT
35957 CT-TTTTTT
1 CTCTTTTTT
35965 C-CTTTTCTT
1 CTCTTTT-TT
35974 -T-TTTTTT
1 CTCTTTTTT
*
35981 -TTTTTTTT
1 CTCTTTTTT
35989 CTCTTTTTT
1 CTCTTTTTT
35998 CT
1 CT
36000 TCTTCAAGCA
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
7 3 0.08
8 21 0.57
9 13 0.35
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (9 bp):
CTCTTTTTT
Found at i:47332 original size:22 final size:21
Alignment explanation
Indices: 47307--47349 Score: 59
Period size: 22 Copynumber: 2.0 Consensus size: 21
47297 TTTATTATAT
**
47307 ATATTTATGAATATATATAAAA
1 ATATTTAACAATATA-ATAAAA
47329 ATATTTAACAATATAATAAAA
1 ATATTTAACAATATAATAAAA
47350 GAAAAATACT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
21 6 0.32
22 13 0.68
ACGTcount: A:0.58, C:0.02, G:0.02, T:0.37
Consensus pattern (21 bp):
ATATTTAACAATATAATAAAA
Found at i:48314 original size:27 final size:26
Alignment explanation
Indices: 48258--48314 Score: 69
Period size: 26 Copynumber: 2.2 Consensus size: 26
48248 GCTGTTGTTT
* *
48258 TCTCTGTTTTTTTTTTCGGTTCTATT
1 TCTCTCTTTTTTTTTTCGGTTCTATG
* *
48284 TCTCTCTTTTTTTTTTCTGTTTCTGTG
1 TCTCTCTTTTTTTTTTC-GGTTCTATG
48311 TCTC
1 TCTC
48315 GTTCTGTCTC
Statistics
Matches: 26, Mismatches: 4, Indels: 1
0.84 0.13 0.03
Matches are distributed among these distances:
26 16 0.62
27 10 0.38
ACGTcount: A:0.02, C:0.19, G:0.11, T:0.68
Consensus pattern (26 bp):
TCTCTCTTTTTTTTTTCGGTTCTATG
Found at i:48715 original size:3 final size:3
Alignment explanation
Indices: 48707--48860 Score: 227
Period size: 3 Copynumber: 50.7 Consensus size: 3
48697 TTATTTATTA
*
48707 AAT AAT AAT AAT AAT AAT AAT ATAT AAT AAT AAT AAT AAAT ACT AAT
1 AAT AAT AAT AAT AAT AAT AAT A-AT AAT AAT AAT AAT -AAT AAT AAT
** *
48754 AAT AAT AAT AAT AAT AAT AAT AAT GCT AAT AAT AAT AAT ACT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
* * *
48802 AAT AAT AAT AAT AAT AAT ATT AAT AAT GAT AAT AAT AAT ATT AAT AAT
1 AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT AAT
48850 AAT AAT AAT AA
1 AAT AAT AAT AA
48861 AATGGATAAA
Statistics
Matches: 135, Mismatches: 14, Indels: 4
0.88 0.09 0.03
Matches are distributed among these distances:
3 129 0.96
4 6 0.04
ACGTcount: A:0.62, C:0.02, G:0.01, T:0.34
Consensus pattern (3 bp):
AAT
Found at i:56355 original size:5 final size:5
Alignment explanation
Indices: 56345--56370 Score: 52
Period size: 5 Copynumber: 5.2 Consensus size: 5
56335 TGACTTAGAA
56345 ACCCG ACCCG ACCCG ACCCG ACCCG A
1 ACCCG ACCCG ACCCG ACCCG ACCCG A
56371 AATAATAATA
Statistics
Matches: 21, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 21 1.00
ACGTcount: A:0.23, C:0.58, G:0.19, T:0.00
Consensus pattern (5 bp):
ACCCG
Found at i:59702 original size:28 final size:31
Alignment explanation
Indices: 59642--59703 Score: 92
Period size: 31 Copynumber: 2.1 Consensus size: 31
59632 CGTAATTTTA
*
59642 TTTTAATATTTATTATTATAGGTTCATATTT
1 TTTTAATATTTATTATTATAGGGTCATATTT
*
59673 TTTTAATATTTATTA-T-TAGGGTCTTATTT
1 TTTTAATATTTATTATTATAGGGTCATATTT
59702 TT
1 TT
59704 ATAGTTTATT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
29 13 0.45
30 1 0.03
31 15 0.52
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (31 bp):
TTTTAATATTTATTATTATAGGGTCATATTT
Found at i:59714 original size:31 final size:29
Alignment explanation
Indices: 59639--59714 Score: 75
Period size: 29 Copynumber: 2.6 Consensus size: 29
59629 GTGCGTAATT
* *
59639 TTATTTTAATATTTA-TTATTATAGGTTC
1 TTATTTTTATATTTATTTATTATAGGGTC
* * *
59667 ATATTTTTTTA-ATATTTATTATTAGGGTC
1 TTATTTTTATATTTATTTATTA-TAGGGTC
59696 TTATTTTTATAGTTTATTT
1 TTATTTTTATA-TTTATTT
59715 TTTCCTAATA
Statistics
Matches: 36, Mismatches: 8, Indels: 5
0.73 0.16 0.10
Matches are distributed among these distances:
27 2 0.06
28 14 0.39
29 15 0.42
31 5 0.14
ACGTcount: A:0.26, C:0.03, G:0.08, T:0.63
Consensus pattern (29 bp):
TTATTTTTATATTTATTTATTATAGGGTC
Found at i:59717 original size:43 final size:43
Alignment explanation
Indices: 59651--59782 Score: 108
Period size: 43 Copynumber: 3.0 Consensus size: 43
59641 ATTTTAATAT
* *
59651 TTATTATTATAGGTTCATATTTTTTTAATATTTATTATTAGGGTC
1 TTATTTTTATA-GTTTAT-TTTTTTTAATATTTATTATTAGGGTC
* * **
59696 TTATTTTTATAGTTTATTTTTTCCTAATATTT-GTATTAGTATC
1 TTATTTTTATAGTTTATTTTTT-TTAATATTTATTATTAGGGTC
* * *
59739 TAATTATTTACCA--ATATTTTTTTTAATATTTATTATTAAGGGTC
1 TTATT-TTTA-TAGTTTATTTTTTTTAATATTTATTATT-AGGGTC
59783 CAATTTTTTT
Statistics
Matches: 69, Mismatches: 13, Indels: 11
0.74 0.14 0.12
Matches are distributed among these distances:
42 8 0.12
43 29 0.42
44 21 0.30
45 11 0.16
ACGTcount: A:0.27, C:0.06, G:0.08, T:0.58
Consensus pattern (43 bp):
TTATTTTTATAGTTTATTTTTTTTAATATTTATTATTAGGGTC
Found at i:63386 original size:31 final size:31
Alignment explanation
Indices: 63350--63409 Score: 93
Period size: 31 Copynumber: 1.9 Consensus size: 31
63340 AAATTAAAAG
* *
63350 AGTTTTGCAATACTGAGATTTAAATAATTTT
1 AGTTTTACAATACTGAAATTTAAATAATTTT
*
63381 AGTTTTACAATATTGAAATTTAAATAATT
1 AGTTTTACAATACTGAAATTTAAATAATT
63410 CATACAACTA
Statistics
Matches: 26, Mismatches: 3, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
31 26 1.00
ACGTcount: A:0.40, C:0.05, G:0.10, T:0.45
Consensus pattern (31 bp):
AGTTTTACAATACTGAAATTTAAATAATTTT
Found at i:63919 original size:20 final size:19
Alignment explanation
Indices: 63871--63919 Score: 57
Period size: 18 Copynumber: 2.6 Consensus size: 19
63861 AACTTAAATC
*
63871 AAAATAATTAAAATAAATAT
1 AAAATAATT-TAATAAATAT
63891 AAAAT--TTTAATAATATAT
1 AAAATAATTTAATAA-ATAT
63909 AAAATAATTTA
1 AAAATAATTTA
63920 TATGATAAAA
Statistics
Matches: 25, Mismatches: 1, Indels: 6
0.78 0.03 0.19
Matches are distributed among these distances:
17 5 0.20
18 11 0.44
20 9 0.36
ACGTcount: A:0.63, C:0.00, G:0.00, T:0.37
Consensus pattern (19 bp):
AAAATAATTTAATAAATAT
Found at i:63963 original size:14 final size:14
Alignment explanation
Indices: 63901--63994 Score: 54
Period size: 14 Copynumber: 6.8 Consensus size: 14
63891 AAAATTTTAA
63901 TAATATATAAAATAAT
1 TAATAT-TAAAA-AAT
* * *
63917 TTATATGATAAAAT
1 TAATATTAAAAAAT
* *
63931 TAAATATCTATAATA-
1 T-AATAT-TAAAAAAT
63946 TAATATTAAAAAAT
1 TAATATTAAAAAAT
*
63960 TAATATT---TAAT
1 TAATATTAAAAAAT
*
63971 TTAT-TTAAAAAAT
1 TAATATTAAAAAAT
63984 TAATATTAAAA
1 TAATATTAAAA
63995 TTAAAATCAA
Statistics
Matches: 59, Mismatches: 12, Indels: 16
0.68 0.14 0.18
Matches are distributed among these distances:
10 2 0.03
11 6 0.10
13 11 0.19
14 22 0.37
15 8 0.14
16 10 0.17
ACGTcount: A:0.56, C:0.01, G:0.01, T:0.41
Consensus pattern (14 bp):
TAATATTAAAAAAT
Found at i:63964 original size:28 final size:24
Alignment explanation
Indices: 63926--63990 Score: 76
Period size: 24 Copynumber: 2.5 Consensus size: 24
63916 TTTATATGAT
63926 AAAATTAAATATCTATAATATAATATTAA
1 AAAATT-AATAT-T-TAAT-TAAT-TTAA
*
63955 AAAATTAATATTTAATTTATTTAA
1 AAAATTAATATTTAATTAATTTAA
63979 AAAATTAATATT
1 AAAATTAATATT
63991 AAAATTAAAA
Statistics
Matches: 35, Mismatches: 1, Indels: 5
0.85 0.02 0.12
Matches are distributed among these distances:
24 16 0.46
25 3 0.09
26 4 0.11
27 1 0.03
28 5 0.14
29 6 0.17
ACGTcount: A:0.55, C:0.02, G:0.00, T:0.43
Consensus pattern (24 bp):
AAAATTAATATTTAATTAATTTAA
Found at i:64024 original size:12 final size:12
Alignment explanation
Indices: 63979--64029 Score: 54
Period size: 12 Copynumber: 4.3 Consensus size: 12
63969 ATTTATTTAA
63979 AAAATT-AATATT
1 AAAATTAAATA-T
63991 AAAATTAAA-AT
1 AAAATTAAATAT
*
64002 CAAA-TATAATAT
1 AAAATTA-AATAT
64014 AAAATTAAATAT
1 AAAATTAAATAT
64026 AAAA
1 AAAA
64030 CCTCTTTGAA
Statistics
Matches: 33, Mismatches: 2, Indels: 8
0.77 0.05 0.19
Matches are distributed among these distances:
10 2 0.06
11 6 0.18
12 21 0.64
13 4 0.12
ACGTcount: A:0.67, C:0.02, G:0.00, T:0.31
Consensus pattern (12 bp):
AAAATTAAATAT
Found at i:66207 original size:34 final size:34
Alignment explanation
Indices: 66149--66253 Score: 120
Period size: 34 Copynumber: 3.3 Consensus size: 34
66139 TTAATAATTT
* *
66149 TAAATAAATAATA-TT--ATAAAT-ATTTTTTAA
1 TAAAAAAATAATATTTACATAAATAATATTTTAA
66179 T--AAAAATAATATTTACATAAATAATATTTTAA
1 TAAAAAAATAATATTTACATAAATAATATTTTAA
66211 TAAAAAAATAATATTTACATAAAT-ATA--TTAA
1 TAAAAAAATAATATTTACATAAATAATATTTTAA
66242 TATAAAAAATAA
1 TA-AAAAAATAA
66254 GAACTATTTA
Statistics
Matches: 66, Mismatches: 2, Indels: 12
0.82 0.03 0.15
Matches are distributed among these distances:
28 9 0.14
29 2 0.03
30 1 0.02
31 12 0.18
32 18 0.27
33 3 0.05
34 21 0.32
ACGTcount: A:0.59, C:0.02, G:0.00, T:0.39
Consensus pattern (34 bp):
TAAAAAAATAATATTTACATAAATAATATTTTAA
Found at i:66232 original size:19 final size:19
Alignment explanation
Indices: 66180--66233 Score: 71
Period size: 16 Copynumber: 3.1 Consensus size: 19
66170 ATTTTTTAAT
66180 AAAAATAATATTTACAT-A
1 AAAAATAATATTTACATAA
*
66198 AATAAT-AT-TTTA-ATAA
1 AAAAATAATATTTACATAA
66214 AAAAATAATATTTACATAA
1 AAAAATAATATTTACATAA
66233 A
1 A
66234 TATATTAATA
Statistics
Matches: 30, Mismatches: 2, Indels: 7
0.77 0.05 0.18
Matches are distributed among these distances:
15 2 0.07
16 10 0.33
17 4 0.13
18 9 0.30
19 5 0.17
ACGTcount: A:0.61, C:0.04, G:0.00, T:0.35
Consensus pattern (19 bp):
AAAAATAATATTTACATAA
Found at i:66555 original size:50 final size:50
Alignment explanation
Indices: 66456--66558 Score: 154
Period size: 50 Copynumber: 2.1 Consensus size: 50
66446 GCATTTAATG
* * * *
66456 GAAGGCGCGTCCCTGGGGATGCGCTTTCCACACGTGGCAGTCGAGTCAGT
1 GAAGGCGCGTCCCCGGGGATGCGCCTTCCACACGTGGCAGTCAACTCAGT
66506 GAAGGCGCGTCCCCGGGGATGCGCCTTCCACACGTGGCA-TCCAACTCAGT
1 GAAGGCGCGTCCCCGGGGATGCGCCTTCCACACGTGGCAGT-CAACTCAGT
66556 GAA
1 GAA
66559 AACACGGGTA
Statistics
Matches: 48, Mismatches: 4, Indels: 2
0.89 0.07 0.04
Matches are distributed among these distances:
49 1 0.02
50 47 0.98
ACGTcount: A:0.18, C:0.31, G:0.33, T:0.17
Consensus pattern (50 bp):
GAAGGCGCGTCCCCGGGGATGCGCCTTCCACACGTGGCAGTCAACTCAGT
Found at i:67903 original size:54 final size:54
Alignment explanation
Indices: 67840--67954 Score: 203
Period size: 54 Copynumber: 2.1 Consensus size: 54
67830 CGGAGTGCAC
* *
67840 ACTTGTTTGAATTTATTTTGATTTGAACTGTTATGTGGTGGTTTTGTAACTGCT
1 ACTTGTTTGAATTTATTCTGATTTGAACTGTTAAGTGGTGGTTTTGTAACTGCT
67894 ACTTGTTTGAATTTATTCTGATTTGAACTGTTAAGTGGTGGTTTTGTAACTGCT
1 ACTTGTTTGAATTTATTCTGATTTGAACTGTTAAGTGGTGGTTTTGTAACTGCT
*
67948 ATTTGTT
1 ACTTGTT
67955 AGTTTTCGTC
Statistics
Matches: 58, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
54 58 1.00
ACGTcount: A:0.19, C:0.08, G:0.22, T:0.51
Consensus pattern (54 bp):
ACTTGTTTGAATTTATTCTGATTTGAACTGTTAAGTGGTGGTTTTGTAACTGCT
Found at i:70040 original size:18 final size:18
Alignment explanation
Indices: 70017--70068 Score: 86
Period size: 18 Copynumber: 2.9 Consensus size: 18
70007 ACATATAACA
*
70017 TATGTCCCGAATGACCAC
1 TATGTCCCGAAGGACCAC
*
70035 TATGTCCCAAAGGACCAC
1 TATGTCCCGAAGGACCAC
70053 TATGTCCCGAAGGACC
1 TATGTCCCGAAGGACC
70069 GCGTAGACCC
Statistics
Matches: 31, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
18 31 1.00
ACGTcount: A:0.29, C:0.33, G:0.19, T:0.19
Consensus pattern (18 bp):
TATGTCCCGAAGGACCAC
Found at i:70893 original size:24 final size:20
Alignment explanation
Indices: 70840--70897 Score: 71
Period size: 20 Copynumber: 2.7 Consensus size: 20
70830 TTCCCCTTGA
*
70840 AGTGCATAGATGCATTCTTC
1 AGTGCATCGATGCATTCTTC
70860 AGTGCATCGATGCATTCTTTAAC
1 AGTGCATCGATGCATTC-TT--C
70883 ATGTGCATCGATGCA
1 A-GTGCATCGATGCA
70898 CTACCCATGC
Statistics
Matches: 33, Mismatches: 1, Indels: 4
0.87 0.03 0.11
Matches are distributed among these distances:
20 16 0.48
21 2 0.06
23 2 0.06
24 13 0.39
ACGTcount: A:0.26, C:0.21, G:0.21, T:0.33
Consensus pattern (20 bp):
AGTGCATCGATGCATTCTTC
Found at i:70979 original size:46 final size:45
Alignment explanation
Indices: 70904--71008 Score: 115
Period size: 46 Copynumber: 2.3 Consensus size: 45
70894 TGCACTACCC
* * *
70904 ATGCATCGATACACAAATTACCTTCGATGTTTTCATT-TTTAAAGGG
1 ATGCATCGATGCACAAATTACATTCGATG-TTTC-TTCTTTAAAGAG
* * *
70950 ATGCATCGATGCACCAATTGCATTTGATGTTTCTTCTTTAAAGAG
1 ATGCATCGATGCACAAATTACATTCGATGTTTCTTCTTTAAAGAG
*
70995 -TGCATTGATGCACA
1 ATGCATCGATGCACA
71009 TTGAATGTGC
Statistics
Matches: 50, Mismatches: 8, Indels: 4
0.81 0.13 0.06
Matches are distributed among these distances:
44 14 0.28
45 12 0.24
46 24 0.48
ACGTcount: A:0.29, C:0.18, G:0.17, T:0.36
Consensus pattern (45 bp):
ATGCATCGATGCACAAATTACATTCGATGTTTCTTCTTTAAAGAG
Found at i:78322 original size:21 final size:21
Alignment explanation
Indices: 78205--78342 Score: 68
Period size: 21 Copynumber: 6.7 Consensus size: 21
78195 ACGCGAAATA
**
78205 AAAATCGCAACGCGA-TCCCC
1 AAAATCGCAACGCGATTTTCC
* ** *
78225 AGAATCGCAAATC-AGTTTCC
1 AAAATCGCAACGCGATTTTCC
*
78245 AAAATCGCAACGCGATTCTT-G
1 AAAATCGCAACGCGATT-TTCC
* * ** *
78266 AAAATCGCAATGCAATAGTAC
1 AAAATCGCAACGCGATTTTCC
* **
78287 AAATTCGCATTGCGATTTTCC
1 AAAATCGCAACGCGATTTTCC
* * * *
78308 AGAATCGCAACGCGAATAT-G
1 AAAATCGCAACGCGATTTTCC
78328 AAAATCGCAACGCGA
1 AAAATCGCAACGCGA
78343 ACACATAAAT
Statistics
Matches: 85, Mismatches: 29, Indels: 8
0.70 0.24 0.07
Matches are distributed among these distances:
19 1 0.01
20 38 0.45
21 44 0.52
22 2 0.02
ACGTcount: A:0.37, C:0.25, G:0.17, T:0.20
Consensus pattern (21 bp):
AAAATCGCAACGCGATTTTCC
Found at i:78498 original size:20 final size:20
Alignment explanation
Indices: 78310--78502 Score: 228
Period size: 20 Copynumber: 9.6 Consensus size: 20
78300 GATTTTCCAG
* ** *
78310 AATCGCAACGCGAATATGAA
1 AATCGCAACGCGTATCCGTA
* *
78330 AATCGCAACGCG-AACACATA
1 AATCGCAACGCGTATC-CGTA
78350 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78370 AATCGCAACGTGTATCCGTA
1 AATCGCAACGCGTATCCGTA
78390 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78410 AATCGCAATGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78430 TATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
* * *
78450 AATCGCAACG-ATAATACATAA
1 AATCGCAACGCGT-ATCCGT-A
78471 AATCGCAACGCGTATCCGTA
1 AATCGCAACGCGTATCCGTA
*
78491 AATTGCAACGCG
1 AATCGCAACGCG
78503 ATATTTAAAG
Statistics
Matches: 148, Mismatches: 20, Indels: 10
0.83 0.11 0.06
Matches are distributed among these distances:
19 2 0.01
20 128 0.86
21 17 0.11
22 1 0.01
ACGTcount: A:0.35, C:0.26, G:0.19, T:0.20
Consensus pattern (20 bp):
AATCGCAACGCGTATCCGTA
Found at i:78940 original size:31 final size:33
Alignment explanation
Indices: 78881--78949 Score: 106
Period size: 31 Copynumber: 2.2 Consensus size: 33
78871 TTCACTTAGA
78881 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
* *
78914 TTTCATTTCGCGTTGCTA-T-TCTCGTTGCGAT
1 TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
78945 TTTCA
1 TTTCA
78950 AGTTAGTATT
Statistics
Matches: 34, Mismatches: 2, Indels: 2
0.89 0.05 0.05
Matches are distributed among these distances:
31 17 0.50
32 1 0.03
33 16 0.47
ACGTcount: A:0.12, C:0.23, G:0.17, T:0.48
Consensus pattern (33 bp):
TTTCATTTCGCGTTACGATTCTCTCGTTGCGAT
Found at i:79073 original size:20 final size:20
Alignment explanation
Indices: 79029--79138 Score: 108
Period size: 21 Copynumber: 5.8 Consensus size: 20
79019 TGCAGAAGAG
*
79029 TCGCAACGAGATAAATGAAAA
1 TCGCAACGAGA-GAATGAAAA
***
79050 TCGCAACGAGAGAATGACTG
1 TCGCAACGAGAGAATGAAAA
79070 TCGCAACGAGAGAAATGAAAA
1 TCGCAACGAGAG-AATGAAAA
79091 TCGCAAC--GAG-A-G--AA
1 TCGCAACGAGAGAATGAAAA
*
79105 TCGCAACGCGA-AATGAAAA
1 TCGCAACGAGAGAATGAAAA
79124 TCGCAACGAGAGAAT
1 TCGCAACGAGAGAAT
79139 CGCAACGCGA
Statistics
Matches: 73, Mismatches: 8, Indels: 17
0.74 0.08 0.17
Matches are distributed among these distances:
14 9 0.12
16 4 0.05
17 2 0.03
19 15 0.21
20 20 0.27
21 23 0.32
ACGTcount: A:0.45, C:0.18, G:0.25, T:0.12
Consensus pattern (20 bp):
TCGCAACGAGAGAATGAAAA
Found at i:79086 original size:41 final size:38
Alignment explanation
Indices: 79022--79138 Score: 145
Period size: 41 Copynumber: 3.1 Consensus size: 38
79012 TTCAATTTGC
* *
79022 AGAAGAGTCGCAACGAGATAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
79060 AGAATGACTGTCGCAACGAGAGAAATGAAAATCGCAACGAG
1 AGAAT-A--GTCGCAACGAGAGAAATGAAAATCGCAACGAG
*
79101 AG-A-A-TCGCAAC--GCGAAATGAAAATCGCAACGAG
1 AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
79134 AGAAT
1 AGAAT
79139 CGCAACGCGA
Statistics
Matches: 71, Mismatches: 3, Indels: 13
0.82 0.03 0.15
Matches are distributed among these distances:
33 23 0.32
34 1 0.01
35 7 0.10
38 5 0.07
39 1 0.01
40 1 0.01
41 33 0.46
ACGTcount: A:0.46, C:0.17, G:0.26, T:0.11
Consensus pattern (38 bp):
AGAATAGTCGCAACGAGAGAAATGAAAATCGCAACGAG
Found at i:79108 original size:14 final size:14
Alignment explanation
Indices: 79089--79145 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
79079 GAGAAATGAA
79089 AATCGCAACGAGAG
1 AATCGCAACGAGAG
*
79103 AATCGCAACGCGAAATGAA
1 AATCGCAA--CG--A-GAG
79122 AATCGCAACGAGAG
1 AATCGCAACGAGAG
79136 AATCGCAACG
1 AATCGCAACG
79146 CGAAACCAAA
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
15 1 0.03
16 2 0.06
17 2 0.06
18 1 0.03
19 10 0.28
ACGTcount: A:0.44, C:0.23, G:0.25, T:0.09
Consensus pattern (14 bp):
AATCGCAACGAGAG
Found at i:79121 original size:33 final size:33
Alignment explanation
Indices: 79081--79161 Score: 144
Period size: 33 Copynumber: 2.5 Consensus size: 33
79071 CGCAACGAGA
79081 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
79114 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
1 GAAATGAAAATCGCAACGAGAGAATCGCAACGC
**
79147 GAAACCAAAATCGCA
1 GAAATGAAAATCGCA
79162 TTGCGATTTT
Statistics
Matches: 46, Mismatches: 2, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
33 46 1.00
ACGTcount: A:0.47, C:0.22, G:0.22, T:0.09
Consensus pattern (33 bp):
GAAATGAAAATCGCAACGAGAGAATCGCAACGC
Found at i:79179 original size:19 final size:19
Alignment explanation
Indices: 79157--79283 Score: 78
Period size: 19 Copynumber: 7.1 Consensus size: 19
79147 GAAACCAAAA
*
79157 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
79176 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
79190 TCTCGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
79209 TCGCGTTGCGA--TTC---
1 TCGCGTTGCGATTTTCATT
*
79223 TCTCGTTGCGATTTTCATTT
1 TCGCGTTGCGATTTTCA-TT
* ***
79243 CTCTCGTTGCGACAATCATT
1 -TCGCGTTGCGATTTTCATT
*
79263 CTCTCGTTGCGA-TTTCATT
1 -TCGCGTTGCGATTTTCATT
79282 TC
1 TC
79284 AACCAAAAGA
Statistics
Matches: 87, Mismatches: 9, Indels: 25
0.72 0.07 0.21
Matches are distributed among these distances:
14 20 0.23
16 6 0.07
17 6 0.07
18 2 0.02
19 25 0.29
20 14 0.16
21 14 0.16
ACGTcount: A:0.12, C:0.25, G:0.18, T:0.45
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:79198 original size:14 final size:14
Alignment explanation
Indices: 79179--79235 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
79169 TTTCATTTCG
79179 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
*
79193 CGTTGCGATTTTCATTTCG
1 CGTTGCGA--TTC---TCT
79212 CGTTGCGATTCTCT
1 CGTTGCGATTCTCT
79226 CGTTGCGATT
1 CGTTGCGATT
79236 TTCATTTCTC
Statistics
Matches: 36, Mismatches: 2, Indels: 10
0.75 0.04 0.21
Matches are distributed among these distances:
14 20 0.56
16 3 0.08
17 3 0.08
19 10 0.28
ACGTcount: A:0.09, C:0.25, G:0.23, T:0.44
Consensus pattern (14 bp):
CGTTGCGATTCTCT
Found at i:79204 original size:33 final size:33
Alignment explanation
Indices: 79162--79243 Score: 164
Period size: 33 Copynumber: 2.5 Consensus size: 33
79152 CAAAATCGCA
79162 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
79195 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
79228 TTGCGATTTTCATTTC
1 TTGCGATTTTCATTTC
79244 TCTCGTTGCG
Statistics
Matches: 49, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 49 1.00
ACGTcount: A:0.10, C:0.23, G:0.20, T:0.48
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTCTCG
Found at i:79246 original size:21 final size:20
Alignment explanation
Indices: 79220--79283 Score: 85
Period size: 20 Copynumber: 3.1 Consensus size: 20
79210 CGCGTTGCGA
79220 TTCTCTCGTTGCGATTTTCAT
1 TTCTCTCGTTGCGA-TTTCAT
**
79241 TTCTCTCGTTGCGACAATCA-
1 TTCTCTCGTTGCGA-TTTCAT
79261 TTCTCTCGTTGCGATTTCAT
1 TTCTCTCGTTGCGATTTCAT
79281 TTC
1 TTC
79284 AACCAAAAGA
Statistics
Matches: 37, Mismatches: 5, Indels: 3
0.82 0.11 0.07
Matches are distributed among these distances:
19 3 0.08
20 17 0.46
21 17 0.46
ACGTcount: A:0.12, C:0.27, G:0.14, T:0.47
Consensus pattern (20 bp):
TTCTCTCGTTGCGATTTCAT
Found at i:79266 original size:20 final size:20
Alignment explanation
Indices: 79219--79274 Score: 76
Period size: 21 Copynumber: 2.8 Consensus size: 20
79209 TCGCGTTGCG
***
79219 ATTCTCTCGTTGCGATTTTC
1 ATTCTCTCGTTGCGACAATC
79239 ATTTCTCTCGTTGCGACAATC
1 A-TTCTCTCGTTGCGACAATC
79260 ATTCTCTCGTTGCGA
1 ATTCTCTCGTTGCGA
79275 TTTCATTTCA
Statistics
Matches: 32, Mismatches: 3, Indels: 2
0.86 0.08 0.05
Matches are distributed among these distances:
20 15 0.47
21 17 0.53
ACGTcount: A:0.14, C:0.27, G:0.16, T:0.43
Consensus pattern (20 bp):
ATTCTCTCGTTGCGACAATC
Found at i:81203 original size:91 final size:93
Alignment explanation
Indices: 80973--81253 Score: 532
Period size: 91 Copynumber: 3.1 Consensus size: 93
80963 TAGATTGCTT
*
80973 AGTAAATTTATTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
81038 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
81066 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
81131 -TTGTCTTTGTTTTGTC-TTTGGTTGAA
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
81157 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
1 AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
81222 TTTGTCTTTGTTTTGTCTTTTGGTTG-A
66 TTTGTCTTTGTTTTGTCTTTTGGTTGAA
81249 AGTAA
1 AGTAA
81254 TGCAATCCAT
Statistics
Matches: 185, Mismatches: 1, Indels: 5
0.97 0.01 0.03
Matches are distributed among these distances:
91 75 0.41
92 38 0.21
93 72 0.39
ACGTcount: A:0.22, C:0.13, G:0.19, T:0.46
Consensus pattern (93 bp):
AGTAAATTTGTTCGGTTGCTGCCAATTCTGCTAAACTGTGTATTCTTTAACACTGTGAAATAGTA
TTTGTCTTTGTTTTGTCTTTTGGTTGAA
Found at i:81341 original size:19 final size:19
Alignment explanation
Indices: 81301--81429 Score: 134
Period size: 19 Copynumber: 7.3 Consensus size: 19
81291 TAGTTTACTT
* *
81301 TCGCAACACGAAACTTAAAA
1 TCGCAACGCGAAAC-CAAAA
81321 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
**
81340 TCGCAACGCGAAATGAAAA
1 TCGCAACGCGAAACCAAAA
*
81359 TCGCAA--C-AAA--AGAA
1 TCGCAACGCGAAACCAAAA
81373 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
81392 TCGCAA--CG--A-CAAAA
1 TCGCAACGCGAAACCAAAA
81406 TCGCAACGCGAAACCAAAA
1 TCGCAACGCGAAACCAAAA
81425 TCGCA
1 TCGCA
81430 TTGCGATTTT
Statistics
Matches: 93, Mismatches: 6, Indels: 21
0.77 0.05 0.17
Matches are distributed among these distances:
14 20 0.22
15 1 0.01
16 6 0.06
17 6 0.06
18 1 0.01
19 46 0.49
20 13 0.14
ACGTcount: A:0.48, C:0.28, G:0.16, T:0.09
Consensus pattern (19 bp):
TCGCAACGCGAAACCAAAA
Found at i:81375 original size:33 final size:33
Alignment explanation
Indices: 81336--81429 Score: 145
Period size: 33 Copynumber: 2.8 Consensus size: 33
81326 ACGCGAAACC
**
81336 AAAATCGCAACGCGAAATGAAAATCGCAAC-AA
1 AAAATCGCAACGCGAAACCAAAATCGCAACGAA
*
81368 AAGAATCGCAACGCGAAACCAAAATCGCAACGAC
1 AA-AATCGCAACGCGAAACCAAAATCGCAACGAA
81402 AAAATCGCAACGCGAAACCAAAATCGCA
1 AAAATCGCAACGCGAAACCAAAATCGCA
81430 TTGCGATTTT
Statistics
Matches: 57, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
32 2 0.04
33 52 0.91
34 3 0.05
ACGTcount: A:0.50, C:0.27, G:0.16, T:0.07
Consensus pattern (33 bp):
AAAATCGCAACGCGAAACCAAAATCGCAACGAA
Found at i:81406 original size:14 final size:14
Alignment explanation
Indices: 81387--81413 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
81377 AACGCGAAAC
81387 CAAAATCGCAACGA
1 CAAAATCGCAACGA
81401 CAAAATCGCAACG
1 CAAAATCGCAACG
81414 CGAAACCAAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.48, C:0.30, G:0.15, T:0.07
Consensus pattern (14 bp):
CAAAATCGCAACGA
Found at i:81427 original size:52 final size:52
Alignment explanation
Indices: 81301--81429 Score: 147
Period size: 52 Copynumber: 2.5 Consensus size: 52
81291 TAGTTTACTT
** *
81301 TCGCAACACGAAACTTAAAATCGCAACGCGAAACCAAAATCGCAACGCGAAA
1 TCGCAACACGAAACAAAAAATCGCAACGCGAAACCAAAATCGCAACGCAAAA
* *
81353 T-G-AAAATCGCAACAAAAGAATCGCAACGCGAAACCAAAATCGCAACGACAAAA
1 TCGCAACA-CGAAACAAAA-AATCGCAACGCGAAACCAAAATCGCAACG-CAAAA
* *
81406 TCGCAACGCGAAAC-CAAAATCGCA
1 TCGCAACACGAAACAAAAAATCGCA
81430 TTGCGATTTT
Statistics
Matches: 63, Mismatches: 9, Indels: 10
0.77 0.11 0.12
Matches are distributed among these distances:
50 3 0.05
51 8 0.13
52 37 0.59
53 7 0.11
54 6 0.10
55 2 0.03
ACGTcount: A:0.48, C:0.28, G:0.16, T:0.09
Consensus pattern (52 bp):
TCGCAACACGAAACAAAAAATCGCAACGCGAAACCAAAATCGCAACGCAAAA
Found at i:81447 original size:19 final size:19
Alignment explanation
Indices: 81425--81578 Score: 148
Period size: 19 Copynumber: 8.6 Consensus size: 19
81415 GAAACCAAAA
*
81425 TCGCATTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
81444 TCGCGTTGCGA--TTC-TT
1 TCGCGTTGCGATTTTCATT
81460 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
* *
81477 TCGCATTGCGA--TTC-TG
1 TCGCGTTGCGATTTTCATT
81493 T--CGTTGCGATTTTCATT
1 TCGCGTTGCGATTTTCATT
**
81510 TCGCGTTGCGATTTTGGTT
1 TCGCGTTGCGATTTTCATT
* *
81529 TCTCGTTGCGATTATCATT
1 TCGCGTTGCGATTTTCATT
*
81548 TCGCGTTGCGATTTTAAGTT
1 TCGCGTTGCGATTTTCA-TT
*
81568 TCGTGTTGCGA
1 TCGCGTTGCGA
81579 AAGTAAACTA
Statistics
Matches: 109, Mismatches: 15, Indels: 21
0.75 0.10 0.14
Matches are distributed among these distances:
14 15 0.14
16 11 0.10
17 11 0.10
19 60 0.55
20 12 0.11
ACGTcount: A:0.12, C:0.19, G:0.23, T:0.46
Consensus pattern (19 bp):
TCGCGTTGCGATTTTCATT
Found at i:81466 original size:14 final size:14
Alignment explanation
Indices: 81447--81503 Score: 60
Period size: 14 Copynumber: 3.7 Consensus size: 14
81437 TTTCATTTCG
81447 CGTTGCGATTCTTT
1 CGTTGCGATTCTTT
81461 CGTTGCGATTTTCATTT
1 CGTTGCGA--TTC-TTT
*
81478 CGCATTGCGATTCTGT
1 CG--TTGCGATTCTTT
81494 CGTTGCGATT
1 CGTTGCGATT
81504 TTCATTTCGC
Statistics
Matches: 37, Mismatches: 1, Indels: 10
0.77 0.02 0.21
Matches are distributed among these distances:
14 16 0.43
16 7 0.19
17 8 0.22
19 6 0.16
ACGTcount: A:0.11, C:0.21, G:0.23, T:0.46
Consensus pattern (14 bp):
CGTTGCGATTCTTT
Found at i:81472 original size:33 final size:33
Alignment explanation
Indices: 81430--81560 Score: 181
Period size: 33 Copynumber: 3.8 Consensus size: 33
81420 CAAAATCGCA
81430 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
* *
81463 TTGCGATTTTCATTTCGCATTGCGATTCTGTCG
1 TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
*
81496 TTGCGATTTTCATTTCGCGTTGCGATTTTGGTTTCTCG
1 TTGCGATTTTCATTTCGCGTTGCGA--TT--CTT-TCG
*
81534 TTGCGATTATCATTTCGCGTTGCGATT
1 TTGCGATTTTCATTTCGCGTTGCGATT
81561 TTAAGTTTCG
Statistics
Matches: 87, Mismatches: 6, Indels: 7
0.87 0.06 0.07
Matches are distributed among these distances:
33 55 0.63
35 2 0.02
36 2 0.02
37 1 0.01
38 27 0.31
ACGTcount: A:0.11, C:0.20, G:0.22, T:0.47
Consensus pattern (33 bp):
TTGCGATTTTCATTTCGCGTTGCGATTCTTTCG
Found at i:82094 original size:21 final size:20
Alignment explanation
Indices: 82036--82095 Score: 59
Period size: 20 Copynumber: 3.0 Consensus size: 20
82026 CTCGAGAGTC
*
82036 CCCTCCCACCGTTCAAGAGG
1 CCCTCCCACCATTCAAGAGG
* * *
82056 CCACT-TCATCATTGAAGAGG
1 CC-CTCCCACCATTCAAGAGG
82076 TCCCTCCCACCATTCAAGAG
1 -CCCTCCCACCATTCAAGAG
82096 CCCGATTCAC
Statistics
Matches: 30, Mismatches: 7, Indels: 5
0.71 0.17 0.12
Matches are distributed among these distances:
20 15 0.50
21 15 0.50
ACGTcount: A:0.25, C:0.38, G:0.17, T:0.20
Consensus pattern (20 bp):
CCCTCCCACCATTCAAGAGG
Found at i:83515 original size:14 final size:14
Alignment explanation
Indices: 83496--83531 Score: 63
Period size: 14 Copynumber: 2.6 Consensus size: 14
83486 ATTGTTTAAT
83496 TGATTTGTAAAAGA
1 TGATTTGTAAAAGA
*
83510 TGATTTGTAAAAGT
1 TGATTTGTAAAAGA
83524 TGATTTGT
1 TGATTTGT
83532 GTAATTGATG
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
14 21 1.00
ACGTcount: A:0.33, C:0.00, G:0.22, T:0.44
Consensus pattern (14 bp):
TGATTTGTAAAAGA
Found at i:83654 original size:19 final size:18
Alignment explanation
Indices: 83638--83753 Score: 122
Period size: 19 Copynumber: 6.7 Consensus size: 18
83628 AAAAATGACT
83638 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG-AA
83657 ATCGCAATGCGAAATGAAA
1 ATCGCAATGCGAAATG-AA
*
83676 ATCGCAA--CGAGA-G-A
1 ATCGCAATGCGAAATGAA
83690 ATCGCAATGCGAAATGAA
1 ATCGCAATGCGAAATGAA
83708 ATCGCAATGCGGAAATGAAA
1 ATCGCAATGC-GAAATG-AA
*
83728 ATCGCAA--CGAGA-G-A
1 ATCGCAATGCGAAATGAA
83742 ATCGCAATGCGA
1 ATCGCAATGCGA
83754 TTTTAATTTC
Statistics
Matches: 86, Mismatches: 3, Indels: 19
0.80 0.03 0.18
Matches are distributed among these distances:
14 16 0.19
16 9 0.10
17 8 0.09
18 12 0.14
19 32 0.37
20 9 0.10
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (18 bp):
ATCGCAATGCGAAATGAA
Found at i:83723 original size:52 final size:52
Alignment explanation
Indices: 83638--83753 Score: 216
Period size: 52 Copynumber: 2.2 Consensus size: 52
83628 AAAAATGACT
83638 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
83690 ATCGCAATGCGAAATG-AAATCGCAATGCGGAAATGAAAATCGCAACGAGAGA
1 ATCGCAATGCGAAATGAAAATCGCAATGC-GAAATGAAAATCGCAACGAGAGA
83742 ATCGCAATGCGA
1 ATCGCAATGCGA
83754 TTTTAATTTC
Statistics
Matches: 63, Mismatches: 0, Indels: 2
0.97 0.00 0.03
Matches are distributed among these distances:
51 12 0.19
52 51 0.81
ACGTcount: A:0.44, C:0.18, G:0.24, T:0.14
Consensus pattern (52 bp):
ATCGCAATGCGAAATGAAAATCGCAATGCGAAATGAAAATCGCAACGAGAGA
Found at i:83771 original size:19 final size:19
Alignment explanation
Indices: 83743--84017 Score: 294
Period size: 19 Copynumber: 15.7 Consensus size: 19
83733 AACGAGAGAA
* *
83743 TCGCAATGCGATTTTAATT
1 TCGCATTGCGATTTTCATT
*
83762 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
83778 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
83795 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
83814 TCGCATTGC-A-TTTC-TC
1 TCGCATTGCGATTTTCATT
83830 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
83847 TCGCATTGCGA--TTC-TC
1 TCGCATTGCGATTTTCATT
83863 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
83880 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
83899 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
*
83918 TCCGCATTGCGA--TTC-TC
1 T-CGCATTGCGATTTTCATT
83935 TCG--TTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
83952 TCGCATTGCGATTTTCATT
1 TCGCATTGCGATTTTCATT
83971 TCCGCATTGCGATTTTCA--
1 T-CGCATTGCGATTTTCATT
*
83989 T-G--TTGGGATTTTCATT
1 TCGCATTGCGATTTTCATT
84005 TCGCATTGCGATT
1 TCGCATTGCGATT
84018 CTCTCGTTGC
Statistics
Matches: 217, Mismatches: 12, Indels: 54
0.77 0.04 0.19
Matches are distributed among these distances:
14 33 0.15
15 1 0.00
16 29 0.13
17 28 0.13
18 5 0.02
19 95 0.44
20 26 0.12
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (19 bp):
TCGCATTGCGATTTTCATT
Found at i:83799 original size:52 final size:52
Alignment explanation
Indices: 83743--84017 Score: 371
Period size: 52 Copynumber: 5.2 Consensus size: 52
83733 AACGAGAGAA
* *
83743 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
83795 TCGCATTGCGATTTTCATTTCGCATTGC-ATTTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTTCGCATTGCGA-TTCTCTCGTTGCGATTTTCATT
* * * * *
83847 TCGCATTGCGATTCTCTCGTTGCG-ATTTTC-ATT-TCGCATTGCGATTTTCATT
1 TCGCATTGCGATT-T-TCATTTCGCA-TTGCGATTCTCTCGTTGCGATTTTCATT
83899 TCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGATTTTCATT
* *
83952 TCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCAT-GTTGGGATTTTCATT
1 TCGCATTGCGATTTTCATTT-CGCATTGCGATTCTC-TCGTTGCGATTTTCATT
84005 TCGCATTGCGATT
1 TCGCATTGCGATT
84018 CTCTCGTTGC
Statistics
Matches: 200, Mismatches: 14, Indels: 17
0.87 0.06 0.07
Matches are distributed among these distances:
50 4 0.02
51 7 0.04
52 95 0.47
53 83 0.41
54 11 0.05
ACGTcount: A:0.15, C:0.22, G:0.17, T:0.46
Consensus pattern (52 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATT
Found at i:83818 original size:85 final size:85
Alignment explanation
Indices: 83729--83903 Score: 244
Period size: 85 Copynumber: 2.1 Consensus size: 85
83719 GAAATGAAAA
83729 TCGCAACG-AGAGAATCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
1 TCGCAACGCA-AGAATCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCA
83793 TTTCGCATTGCGATTTTCATT
65 TTTCGCATTGCGATTTTCATT
** **** * ** *
83814 TCGCATTGCATTTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
1 TCGCAACGCAAGAATCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
83879 TTCGCATTGCGATTTTCATT
66 TTCGCATTGCGATTTTCATT
83899 TCGCA
1 TCGCA
83904 TTGCGATTTT
Statistics
Matches: 79, Mismatches: 10, Indels: 2
0.87 0.11 0.02
Matches are distributed among these distances:
85 78 0.99
86 1 0.01
ACGTcount: A:0.17, C:0.23, G:0.18, T:0.42
Consensus pattern (85 bp):
TCGCAACGCAAGAATCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCAT
TTCGCATTGCGATTTTCATT
Found at i:83837 original size:33 final size:34
Alignment explanation
Indices: 83800--83965 Score: 257
Period size: 33 Copynumber: 4.8 Consensus size: 34
83790 TCATTTCGCA
83800 TTGCGATTTTCATTTCGCATTGC-ATTTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTCTCTCG
83833 TTGCGATTTTCATTTCGCATTGCGA-TTCTCTCG
1 TTGCGATTTTCATTTCGCATTGCGATTTCTCTCG
*
83866 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCG
1 TTGCGATTTTCATTTCGCATTGCGA-TTTC-TCTCG
83902 CATTGCGATTTTCATTTCCGCATTGCGA-TTCTCTCG
1 --TTGCGATTTTCATTT-CGCATTGCGATTTCTCTCG
83938 TTGCGATTTTCATTTCGCATTGCGATTT
1 TTGCGATTTTCATTTCGCATTGCGATTT
83966 TCATTTCCGC
Statistics
Matches: 123, Mismatches: 2, Indels: 15
0.88 0.01 0.11
Matches are distributed among these distances:
33 66 0.54
34 18 0.15
35 3 0.02
36 8 0.07
37 3 0.02
38 15 0.12
39 10 0.08
ACGTcount: A:0.13, C:0.23, G:0.17, T:0.47
Consensus pattern (34 bp):
TTGCGATTTTCATTTCGCATTGCGATTTCTCTCG
Found at i:83904 original size:85 final size:86
Alignment explanation
Indices: 83749--83912 Score: 312
Period size: 85 Copynumber: 1.9 Consensus size: 86
83739 AGAATCGCAA
83749 TGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
1 TGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
83814 TCGCATTGC-ATTTCTCTCGT
66 TCGCATTGCGATTTCTCTCGT
*
83834 TGCGATTTTCATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
1 TGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
83899 TCGCATTGCGATTT
66 TCGCATTGCGATTT
83913 TCATTTCCGC
Statistics
Matches: 77, Mismatches: 1, Indels: 1
0.97 0.01 0.01
Matches are distributed among these distances:
85 73 0.95
86 4 0.05
ACGTcount: A:0.14, C:0.22, G:0.17, T:0.47
Consensus pattern (86 bp):
TGCGATTTTAATTTCGCATTGCGATTCTCTCGTTGCGATTTTCATTTCGCATTGCGATTTTCATT
TCGCATTGCGATTTCTCTCGT
Found at i:83942 original size:72 final size:71
Alignment explanation
Indices: 83800--83989 Score: 318
Period size: 72 Copynumber: 2.7 Consensus size: 71
83790 TCATTTCGCA
*
83800 TTGCGATTTTCATTTCGCATTGC-A-TTTC-TCTCG--TTGCGATTTTCATTTCGCATTGCGATT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATT
83860 CTCTCG
66 CTCTCG
83866 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGAT
83931 TCTCTCG
65 TCTCTCG
83938 TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCAT
1 TTGCGATTTTCATTTCGCATTGCGATTTTCATTT-CGCATTGCGATTTTCAT
83990 GTTGGGATTT
Statistics
Matches: 116, Mismatches: 1, Indels: 7
0.94 0.01 0.06
Matches are distributed among these distances:
66 23 0.20
67 1 0.01
68 4 0.03
69 4 0.03
71 15 0.13
72 52 0.45
73 17 0.15
ACGTcount: A:0.14, C:0.23, G:0.16, T:0.47
Consensus pattern (71 bp):
TTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCGCATTGCGATT
CTCTCG
Found at i:84017 original size:72 final size:72
Alignment explanation
Indices: 83743--83989 Score: 298
Period size: 72 Copynumber: 3.5 Consensus size: 72
83733 AACGAGAGAA
* * * * *
83743 TCGCAATGCGATTTTAATTTCGCATTGCGATTCTCTC-GTTGCG-ATTTTC-ATT-TCGCATTGC
1 TCGCATTGCGATTTTCATTTCGCATTGCGATT-T-TCATTTCCGCA-TTGCGATTCTCGCATTGC
83804 GATTTTCATT
63 GATTTTCATT
* * *
83814 TCGCATTGC-A-TTTC-TCTCG--TTGCGATTTTCATTT-CGCATTGCGATTCTCTCGTTGCGAT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCGCATTGCGAT
83873 TTTCATT
66 TTTCATT
* *
83880 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCTCGTTGCGAT
1 TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCGCATTGCGAT
83945 TTTCATT
66 TTTCATT
83952 TCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCAT
1 TCGCATTGCGATTTTCATTT-CGCATTGCGATTTTCAT
83990 GTTGGGATTT
Statistics
Matches: 157, Mismatches: 8, Indels: 20
0.85 0.04 0.11
Matches are distributed among these distances:
64 7 0.04
65 7 0.04
66 34 0.22
67 1 0.01
68 8 0.05
69 7 0.04
70 1 0.01
71 23 0.15
72 52 0.33
73 17 0.11
ACGTcount: A:0.15, C:0.23, G:0.17, T:0.46
Consensus pattern (72 bp):
TCGCATTGCGATTTTCATTTCGCATTGCGATTTTCATTTCCGCATTGCGATTCTCGCATTGCGAT
TTTCATT
Found at i:84039 original size:33 final size:33
Alignment explanation
Indices: 83749--84031 Score: 136
Period size: 33 Copynumber: 8.2 Consensus size: 33
83739 AGAATCGCAA
*
83749 TGCGATTTTAATTTCGCATTGCGATTCTC-TCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCAT-GT
*
83782 TGCGATTTTCATTTCGCATTGCGATTTTCAT-T
1 TGCGATTTTCATTTCGCATTGCGATTCTCATGT
* * * *
83814 T-CGCA-TTGCATTTCTCTCGTTGCGATTTTCAT-T
1 TGCG-ATTTTCA-TT-TCGCATTGCGATTCTCATGT
* * * *
83847 T-CGCA-TTGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
1 TGCG-ATTTTC-ATT-TCGCATTGCGATTCTCA--T-G--T
*
83886 TGCGATTTTCATTTCGCATTGCGATTTTCAT-T
1 TGCGATTTTCATTTCGCATTGCGATTCTCATGT
* * * * *
83918 TCCGCA-TTGCGATTCTCTCGTTGCGATTTTCATTTCGCAT
1 TGCG-ATTTTC-ATT-TCGCATTGCGATTCTCA--T-G--T
*
83958 TGCGATTTTCATTTCCGCATTGCGATTTTCATGT
1 TGCGATTTTCATTT-CGCATTGCGATTCTCATGT
*
83992 TGGGATTTTCATTTCGCATTGCGATTCTC-TCGT
1 TGCGATTTTCATTTCGCATTGCGATTCTCAT-GT
84025 TGCGATT
1 TGCGATT
84032 GTAATTTCCG
Statistics
Matches: 206, Mismatches: 19, Indels: 50
0.75 0.07 0.18
Matches are distributed among these distances:
31 6 0.03
32 13 0.06
33 99 0.48
34 31 0.15
35 1 0.00
36 3 0.01
37 1 0.00
38 16 0.08
39 24 0.12
40 12 0.06
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.46
Consensus pattern (33 bp):
TGCGATTTTCATTTCGCATTGCGATTCTCATGT
Found at i:84046 original size:53 final size:51
Alignment explanation
Indices: 83743--84050 Score: 259
Period size: 52 Copynumber: 5.9 Consensus size: 51
83733 AACGAGAGAA
* ** * *
83743 TCGCAATGCGATTTTAATTTCGCATTGCGA-TTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCGTTCCGCATTGCCATTTC-CT-GTTGCGATTTTCATT
* *
83795 TCGCATTGCGATTTTCATTTCGCATTG-CATTTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTCGTTCCGCATTGCCATTTC-CT-GTTGCGATTTTCATT
* ** *
83847 TCGCATTGCGATTCTCTCGTTGCG-ATTTTCATTTCGC-ATTGCGATTTTCATT
1 TCGCATTGCGATT-T-TCGTTCCGCATTGCCATTTC-CTGTTGCGATTTTCATT
* *
83899 TCGCATTGCGATTTTCATTTCCGCATTGCGA-TTCTCTCGTTGCGATTTTCATT
1 TCGCATTGCGATTTTC-GTTCCGCATTGCCATTTC-CT-GTTGCGATTTTCATT
* * * *
83952 TCGCATTGCGATTTTCATTTCCGCATTGCGATTTTCATGTTGGGATTTTCATT
1 TCGCATTGCGATTTTC-GTTCCGCATTGCCA-TTTCCTGTTGCGATTTTCATT
* **
84005 TCGCATTGCGATTCTCTCGTTGCG-ATTGTAATTTCCGTGTTGCGAT
1 TCGCATTGCGATT-T-TCGTTCCGCATTGCCATTTCC-TGTTGCGAT
84051 AGTCAAATGC
Statistics
Matches: 220, Mismatches: 23, Indels: 25
0.82 0.09 0.09
Matches are distributed among these distances:
50 2 0.01
51 10 0.05
52 95 0.43
53 89 0.40
54 19 0.09
55 5 0.02
ACGTcount: A:0.14, C:0.22, G:0.18, T:0.45
Consensus pattern (51 bp):
TCGCATTGCGATTTTCGTTCCGCATTGCCATTTCCTGTTGCGATTTTCATT
Found at i:86325 original size:12 final size:12
Alignment explanation
Indices: 86308--86332 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
86298 TCTTCGGGGA
86308 CTTTTTCTTCTT
1 CTTTTTCTTCTT
86320 CTTTTTCTTCTT
1 CTTTTTCTTCTT
86332 C
1 C
86333 AGGATTATAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.00, C:0.28, G:0.00, T:0.72
Consensus pattern (12 bp):
CTTTTTCTTCTT
Found at i:86541 original size:24 final size:24
Alignment explanation
Indices: 86507--86553 Score: 69
Period size: 24 Copynumber: 2.0 Consensus size: 24
86497 CTGAAACATC
86507 ATCAAAATCCGTG-TATTGACCAAT
1 ATCAAAATCCG-GATATTGACCAAT
*
86531 ATCAAAGTCCGGATATTGACCAA
1 ATCAAAATCCGGATATTGACCAA
86554 GACCAAATTT
Statistics
Matches: 21, Mismatches: 1, Indels: 2
0.88 0.04 0.08
Matches are distributed among these distances:
23 1 0.05
24 20 0.95
ACGTcount: A:0.38, C:0.21, G:0.15, T:0.26
Consensus pattern (24 bp):
ATCAAAATCCGGATATTGACCAAT
Found at i:87272 original size:20 final size:20
Alignment explanation
Indices: 87244--87472 Score: 253
Period size: 20 Copynumber: 11.4 Consensus size: 20
87234 AAATTTCAGT
* * *
87244 GTTGTGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
87264 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
* *
87284 GTTGCGATTTACAGATTCTC
1 GTTGCGATTTACGGATTCGC
**
87304 GTTGCGATTTACGGATTATC
1 GTTGCGATTTACGGATTCGC
*
87324 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
87344 GTTGCGATATACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
87364 ATTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
* *
87384 GTTGCGATTTACGGATACAC
1 GTTGCGATTTACGGATTCGC
*
87404 GTTGCGATTTACGGATACGC
1 GTTGCGATTTACGGATTCGC
*
87424 GTTGCGATTTATGTG-TTCGC
1 GTTGCGATTTACG-GATTCGC
* **
87444 GTTGCGATTTTCATATTCGC
1 GTTGCGATTTACGGATTCGC
87464 GTTGCGATT
1 GTTGCGATT
87473 CTGGAAAATC
Statistics
Matches: 185, Mismatches: 22, Indels: 4
0.88 0.10 0.02
Matches are distributed among these distances:
20 184 0.99
21 1 0.01
ACGTcount: A:0.20, C:0.18, G:0.26, T:0.37
Consensus pattern (20 bp):
GTTGCGATTTACGGATTCGC
Found at i:96082 original size:20 final size:20
Alignment explanation
Indices: 96057--96134 Score: 81
Period size: 20 Copynumber: 4.0 Consensus size: 20
96047 GGCTGCTGGA
96057 AACCGGTT-TAACCGGTTTTC
1 AACCGGTTCTAACCGG-TTTC
*
96077 AACCGGTTCTGACCGGTTTC
1 AACCGGTTCTAACCGGTTTC
* *
96097 AACCGGTTCGAACCAGTTT-
1 AACCGGTTCTAACCGGTTTC
*
96116 GACCGG-TCTGAACCGGTTT
1 AACCGGTTCT-AACCGGTTT
96135 GACCAGTCTG
Statistics
Matches: 49, Mismatches: 7, Indels: 5
0.80 0.11 0.08
Matches are distributed among these distances:
18 2 0.04
19 13 0.27
20 28 0.57
21 6 0.12
ACGTcount: A:0.19, C:0.27, G:0.24, T:0.29
Consensus pattern (20 bp):
AACCGGTTCTAACCGGTTTC
Found at i:96122 original size:19 final size:19
Alignment explanation
Indices: 96106--96145 Score: 62
Period size: 19 Copynumber: 2.1 Consensus size: 19
96096 CAACCGGTTC
96106 GAACCAGTTTGACCGGTCT
1 GAACCAGTTTGACCGGTCT
* *
96125 GAACCGGTTTGACCAGTCT
1 GAACCAGTTTGACCGGTCT
96144 GA
1 GA
96146 CCCGACCCGA
Statistics
Matches: 19, Mismatches: 2, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
19 19 1.00
ACGTcount: A:0.23, C:0.25, G:0.28, T:0.25
Consensus pattern (19 bp):
GAACCAGTTTGACCGGTCT
Found at i:116165 original size:36 final size:35
Alignment explanation
Indices: 116116--116216 Score: 129
Period size: 31 Copynumber: 2.9 Consensus size: 35
116106 AAGATACATC
116116 ATACAATTAACTCTTAACTTAAATATTATAGTAATG
1 ATACAATTAA-TCTTAACTTAAATATTATAGTAATG
*
116152 ATACAATTTA-C-T--CTTAAATATTATAGTAATG
1 ATACAATTAATCTTAACTTAAATATTATAGTAATG
*
116183 ATACAATTAATTCTTAAGTTAAATATTAATAGTA
1 ATACAATTAA-TCTTAACTTAAATATT-ATAGTA
116217 TGAAACTTAT
Statistics
Matches: 56, Mismatches: 3, Indels: 11
0.80 0.04 0.16
Matches are distributed among these distances:
31 28 0.50
33 2 0.04
34 2 0.04
36 18 0.32
37 6 0.11
ACGTcount: A:0.45, C:0.09, G:0.06, T:0.41
Consensus pattern (35 bp):
ATACAATTAATCTTAACTTAAATATTATAGTAATG
Found at i:126991 original size:36 final size:36
Alignment explanation
Indices: 126907--127050 Score: 179
Period size: 35 Copynumber: 4.1 Consensus size: 36
126897 AGATAAACAT
** *
126907 TTGAATCGAAAGTGTTGATGCTTCCTTCCGTTCATT-
1 TTGAATCGAAAGTGCCGATGCTTCCTTTCGTTC-TTC
*
126943 TT-AATCGAAAGTGCCGATGCTTCCTTTCATTCTTC
1 TTGAATCGAAAGTGCCGATGCTTCCTTTCGTTCTTC
*
126978 TTGAATCGAAAGTGCCGATGCTTCC-TTCTGTTC-AC
1 TTGAATCGAAAGTGCCGATGCTTCCTTTC-GTTCTTC
* *
127013 TTGAATCGAAAATGCTGATGCTTCCTTTCGTTCTTC
1 TTGAATCGAAAGTGCCGATGCTTCCTTTCGTTCTTC
127049 TT
1 TT
127051 ATTCACCTTC
Statistics
Matches: 94, Mismatches: 9, Indels: 10
0.83 0.08 0.09
Matches are distributed among these distances:
34 2 0.02
35 59 0.63
36 33 0.35
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (36 bp):
TTGAATCGAAAGTGCCGATGCTTCCTTTCGTTCTTC
Found at i:127023 original size:71 final size:71
Alignment explanation
Indices: 126907--127050 Score: 216
Period size: 71 Copynumber: 2.0 Consensus size: 71
126897 AGATAAACAT
** * * *
126907 TTGAATCGAAAGTGTTGATGCTTCCTTCCGTTCATTTTAATCGAAAGTGCCGATGCTTCCTTTCA
1 TTGAATCGAAAGTGCCGATGCTTCCTTCCGTTCACTTGAATCGAAAATGCCGATGCTTCCTTTCA
126972 TTCTTC
66 TTCTTC
* * *
126978 TTGAATCGAAAGTGCCGATGCTTCCTTCTGTTCACTTGAATCGAAAATGCTGATGCTTCCTTTCG
1 TTGAATCGAAAGTGCCGATGCTTCCTTCCGTTCACTTGAATCGAAAATGCCGATGCTTCCTTTCA
127043 TTCTTC
66 TTCTTC
127049 TT
1 TT
127051 ATTCACCTTC
Statistics
Matches: 65, Mismatches: 8, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
71 65 1.00
ACGTcount: A:0.19, C:0.23, G:0.17, T:0.40
Consensus pattern (71 bp):
TTGAATCGAAAGTGCCGATGCTTCCTTCCGTTCACTTGAATCGAAAATGCCGATGCTTCCTTTCA
TTCTTC
Found at i:137839 original size:24 final size:24
Alignment explanation
Indices: 137811--137858 Score: 78
Period size: 24 Copynumber: 2.0 Consensus size: 24
137801 CACCTCTGGC
137811 ACCCTCTTCATGATGATCACCATG
1 ACCCTCTTCATGATGATCACCATG
* *
137835 ACCCTCTTCCTTATGATCACCATG
1 ACCCTCTTCATGATGATCACCATG
137859 GCCACCTTGA
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.23, C:0.35, G:0.10, T:0.31
Consensus pattern (24 bp):
ACCCTCTTCATGATGATCACCATG
Found at i:141056 original size:3 final size:3
Alignment explanation
Indices: 141050--141138 Score: 169
Period size: 3 Copynumber: 29.7 Consensus size: 3
141040 TTTTTATCCA
141050 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
141098 TAT TAT TAT TAT TAT TAT TAT TAT CAT TAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA
141139 AATATATATT
Statistics
Matches: 84, Mismatches: 2, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
3 84 1.00
ACGTcount: A:0.34, C:0.01, G:0.00, T:0.65
Consensus pattern (3 bp):
TAT
Found at i:142660 original size:13 final size:13
Alignment explanation
Indices: 142642--142680 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
142632 GTAATTAAAT
142642 TTTTAAATATTTA
1 TTTTAAATATTTA
*
142655 TTTTAAATGAATTA
1 TTTTAAAT-ATTTA
142669 TTTT-AATATTTA
1 TTTTAAATATTTA
142681 GCTTTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 4 0.17
13 11 0.48
14 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
TTTTAAATATTTA
Found at i:148169 original size:16 final size:15
Alignment explanation
Indices: 148148--148185 Score: 51
Period size: 16 Copynumber: 2.5 Consensus size: 15
148138 CTCATCCAGC
148148 AAAGAAAGAAGAAGAA
1 AAAGAAAGAAGAA-AA
*
148164 AAAGAAAAAAGAAAA
1 AAAGAAAGAAGAAAA
148179 AAA-AAAG
1 AAAGAAAG
148186 GAAAATCGAA
Statistics
Matches: 20, Mismatches: 2, Indels: 2
0.83 0.08 0.08
Matches are distributed among these distances:
14 3 0.15
15 5 0.25
16 12 0.60
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (15 bp):
AAAGAAAGAAGAAAA
Found at i:148176 original size:19 final size:19
Alignment explanation
Indices: 148152--148190 Score: 53
Period size: 19 Copynumber: 2.1 Consensus size: 19
148142 TCCAGCAAAG
*
148152 AAAGAAGAAGAAAAA-GAAA
1 AAAGAA-AAAAAAAAGGAAA
148171 AAAGAAAAAAAAAAGGAAA
1 AAAGAAAAAAAAAAGGAAA
148190 A
1 A
148191 TCGAATAAAG
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
19 11 0.61
ACGTcount: A:0.82, C:0.00, G:0.18, T:0.00
Consensus pattern (19 bp):
AAAGAAAAAAAAAAGGAAA
Found at i:150533 original size:84 final size:84
Alignment explanation
Indices: 150392--150808 Score: 698
Period size: 83 Copynumber: 5.0 Consensus size: 84
150382 TGTGATATCT
150392 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
1 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
*
150457 GTTATCTGATCTGATTTGG
66 GTTATCTGATCTGGTTTGG
*
150476 CAGAACCAATCATTGAATTTGGAAGATGAATTTTCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
1 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
* *
150541 GTTATCTGATCTGGTTAGA
66 GTTATCTGATCTGGTTTGG
* *
150560 CAGAA-CAATCATTGAGTTTAGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
1 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
150624 GTTATCTGATCTGG-TTGG
66 GTTATCTGATCTGGTTTGG
* * *
150642 ACAGAACCAATCATTGAATTTAGAAGATGAATTCGTTC-ATAGCATCTTCTGGAAGTGTTCTTTG
1 -CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTG
*
150706 AGTTATCTGATCTGGTTTAG
65 AGTTATCTGATCTGGTTTGG
*
150726 CAGAACCAATCATTGAATTGGGAAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGA
1 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
150790 GTTATCTGATCTGGTTTGG
66 GTTATCTGATCTGGTTTGG
150809 TAAGAACTAC
Statistics
Matches: 311, Mismatches: 18, Indels: 9
0.92 0.05 0.03
Matches are distributed among these distances:
82 3 0.01
83 192 0.62
84 116 0.37
ACGTcount: A:0.28, C:0.14, G:0.22, T:0.36
Consensus pattern (84 bp):
CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
GTTATCTGATCTGGTTTGG
Found at i:150674 original size:167 final size:166
Alignment explanation
Indices: 150392--150805 Score: 701
Period size: 167 Copynumber: 2.5 Consensus size: 166
150382 TGTGATATCT
150392 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
1 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
* * *
150457 GTTATCTGATCTGATTTGGCAGAACCAATCATTGAATTTGGAAGATGAATT-TTCTCAATAGCAT
66 GTTATCTGATCTG-GTTGGCAGAACCAATCATTGAATTTAGAAGATGAATTCGT-TC-ATAGCAT
150521 CTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGG-TTAG
128 CTTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG
* *
150559 ACAGAA-CAATCATTGAGTTTAGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTG
1 -CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTG
150623 AGTTATCTGATCTGGTTGGACAGAACCAATCATTGAATTTAGAAGATGAATTCGTTCATAGCATC
65 AGTTATCTGATCTGGTTGG-CAGAACCAATCATTGAATTTAGAAGATGAATTCGTTCATAGCATC
150688 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG
129 TTCTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG
*
150726 CAGAACCAATCATTGAATTGGGAAGATGAATTTGC-CAATAGCATCTTCTGGAAGTGTTCTTTGA
1 CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
150790 GTTATCTGATCTGGTT
66 GTTATCTGATCTGGTT
150806 TGGTAAGAAC
Statistics
Matches: 234, Mismatches: 8, Indels: 10
0.93 0.03 0.04
Matches are distributed among these distances:
166 95 0.41
167 133 0.57
168 6 0.03
ACGTcount: A:0.28, C:0.14, G:0.21, T:0.36
Consensus pattern (166 bp):
CAGAACCAATCATTGAATTTGGAAGATGAATTTGCTCAATAGCATCTTCTGGAAGTGTTCTTTGA
GTTATCTGATCTGGTTGGCAGAACCAATCATTGAATTTAGAAGATGAATTCGTTCATAGCATCTT
CTGGAAGTGTTCTTTGAGTTATCTGATCTGGTTTAG
Found at i:151937 original size:225 final size:225
Alignment explanation
Indices: 151542--152092 Score: 959
Period size: 225 Copynumber: 2.5 Consensus size: 225
151532 ATTTCAAATC
* *
151542 CACTTGATGGATCATTCATTGCCAGATAA-GTTCATAATGAGAAGAACTCATCTGAAGAATGAAG
1 CACTTGATGGATCA-TCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAG
151606 AAGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCATTTGATGGATCAAC
65 AAGAAGTTCATAATGAGAAGAACTTGTTCAAC-TTTTGTTTAAATTCATCATTTGATGGATCAAC
151671 ATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
129 ATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAG
*
151736 AAGAACTTGTTCAACTTTTTGTTTAAATTCAT
194 AAGAACTTGTTCAACCTTTTGTTTAAATTCAT
* *
151768 CATTTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1 CACTTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
151833 AGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTTAAATTCATCATTTGATGGATCAACAT
66 AGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTTAAATTCATCATTTGATGGATCAACAT
151898 TGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
131 TGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
*
151963 GAACTTGTTCAACCTTTTGTTTGAATTCAT
196 GAACTTGTTCAACCTTTTGTTTAAATTCAT
**
151993 CACTTGAT---T-ATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
1 CACTTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
* *
152054 AGAAGTTCATAATGAGAAGAGCTTGTTCAACCTTTGTTT
66 AGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTT
152093 GATACTATCA
Statistics
Matches: 312, Mismatches: 12, Indels: 7
0.94 0.04 0.02
Matches are distributed among these distances:
221 86 0.28
222 1 0.00
225 146 0.47
226 79 0.25
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (225 bp):
CACTTGATGGATCATCATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGA
AGAAGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTTAAATTCATCATTTGATGGATCAACAT
TGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGAAGTTCATAATGAGAA
GAACTTGTTCAACCTTTTGTTTAAATTCAT
Found at i:151949 original size:112 final size:112
Alignment explanation
Indices: 151545--152092 Score: 935
Period size: 113 Copynumber: 4.9 Consensus size: 112
151535 TCAAATCCAC
* * *
151545 TTGATGGATCATTCATTGCCAGATAA-GTTCATAATGAGAAGAACTCATCTGAAGAATGAAGAAG
1 TTGATGGATCA-ACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAG
151609 AAGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
65 AAGTTCATAATGAGAAGAACTTGTTCAAC-TTTTGTTTAAATTCATCAT
151658 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
151723 AGTTCATAATGAGAAGAACTTGTTCAACTTTTTGTTTAAATTCATCAT
66 AGTTCATAATGAGAAGAACTTGTTCAAC-TTTTGTTTAAATTCATCAT
151771 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
151836 AGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTTAAATTCATCAT
66 AGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTTAAATTCATCAT
151883 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
151948 AGTTCATAATGAGAAGAACTTGTTCAACCTTTTGTTTGAATTCATCAC
66 AGTTCATAATGAGAAGAACTTGTTCAA-CTTTTGTTTAAATTCATCAT
***
151996 TTGAT---T-ATTTTTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
1 TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
* *
152057 AGTTCATAATGAGAAGAGCTTGTTCAACCTTTGTTT
66 AGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTT
152093 GATACTATCA
Statistics
Matches: 423, Mismatches: 10, Indels: 9
0.96 0.02 0.02
Matches are distributed among these distances:
108 8 0.02
109 78 0.18
110 1 0.00
112 123 0.29
113 213 0.50
ACGTcount: A:0.37, C:0.13, G:0.20, T:0.30
Consensus pattern (112 bp):
TTGATGGATCAACATTGCCAGAGAAGGTTCATAATGAGAAGAACTCATCTGAAGAAGGAAGAAGA
AGTTCATAATGAGAAGAACTTGTTCAACTTTTGTTTAAATTCATCAT
Found at i:152415 original size:3 final size:3
Alignment explanation
Indices: 152409--152478 Score: 115
Period size: 3 Copynumber: 23.7 Consensus size: 3
152399 TTTTTATCCA
*
152409 TAT TAT TAT TAT TAT TAT TAT TAT TAG TAT TAT TAT TAT TAT TAT TAT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT
*
152457 TAT TAT T-T CAT TAT TAT TAT TA
1 TAT TAT TAT TAT TAT TAT TAT TA
152479 AATATATATT
Statistics
Matches: 62, Mismatches: 4, Indels: 2
0.91 0.06 0.03
Matches are distributed among these distances:
2 1 0.02
3 61 0.98
ACGTcount: A:0.33, C:0.01, G:0.01, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:153999 original size:13 final size:13
Alignment explanation
Indices: 153981--154019 Score: 53
Period size: 13 Copynumber: 3.0 Consensus size: 13
153971 GTAATTAAAT
153981 TTTTAAATATTTA
1 TTTTAAATATTTA
*
153994 TTTTAAATGAATTA
1 TTTTAAAT-ATTTA
154008 TTTT-AATATTTA
1 TTTTAAATATTTA
154020 GCTTTCAATA
Statistics
Matches: 23, Mismatches: 2, Indels: 3
0.82 0.07 0.11
Matches are distributed among these distances:
12 4 0.17
13 11 0.48
14 8 0.35
ACGTcount: A:0.38, C:0.00, G:0.03, T:0.59
Consensus pattern (13 bp):
TTTTAAATATTTA
Found at i:154185 original size:90 final size:89
Alignment explanation
Indices: 154024--154190 Score: 194
Period size: 90 Copynumber: 1.9 Consensus size: 89
154014 TATTTAGCTT
* * * *
154024 TCAATATCAAAGAAAAGGACAGTCTTAATACAACTGGAGGTCCTGTTCTGGTATTTTAAAATTAA
1 TCAATATCAAAGAAAAGGACAGTCTTAAGACAACTAGAAGTCCTGTTCTGATATTTTAAAATTAA
*
154089 ACAATATTATTTAAATTAATATTTA
66 AAAATATT-TTTAAATTAATATTTA
* * * * * *
154114 TCAATATCAAAGAAAA-GAGCTGTCTTAAGGCACCTAGAAGTTCTTTTCTGATATTTTTAAA-TA
1 TCAATATCAAAGAAAAGGA-CAGTCTTAAGACAACTAGAAGTCCTGTTCTGATATTTTAAAATTA
154177 AATAAATATTTTTA
65 AA-AAATATTTTTA
154191 TATATAATTT
Statistics
Matches: 64, Mismatches: 11, Indels: 5
0.80 0.14 0.06
Matches are distributed among these distances:
89 10 0.16
90 54 0.84
ACGTcount: A:0.40, C:0.11, G:0.12, T:0.37
Consensus pattern (89 bp):
TCAATATCAAAGAAAAGGACAGTCTTAAGACAACTAGAAGTCCTGTTCTGATATTTTAAAATTAA
AAAATATTTTTAAATTAATATTTA
Found at i:162640 original size:25 final size:25
Alignment explanation
Indices: 162612--162659 Score: 78
Period size: 25 Copynumber: 1.9 Consensus size: 25
162602 TAGGTAGGAT
*
162612 AAGTTTGTTCATAATATTTTTGTCG
1 AAGTATGTTCATAATATTTTTGTCG
*
162637 AAGTATGTTCATGATATTTTTGT
1 AAGTATGTTCATAATATTTTTGT
162660 ATTTCCGGGT
Statistics
Matches: 21, Mismatches: 2, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
25 21 1.00
ACGTcount: A:0.25, C:0.06, G:0.17, T:0.52
Consensus pattern (25 bp):
AAGTATGTTCATAATATTTTTGTCG
Found at i:167812 original size:31 final size:31
Alignment explanation
Indices: 167753--167820 Score: 86
Period size: 31 Copynumber: 2.2 Consensus size: 31
167743 AAAAATCAAC
167753 AAAAATGCAATAAAAAAAGAATTAAAAGTGA
1 AAAAATGCAATAAAAAAAGAATTAAAAGTGA
* *
167784 ATAAAATTCAAT-AAAAAAGAATGT-AAAGTTA
1 A-AAAATGCAATAAAAAAAGAAT-TAAAAGTGA
167815 AAAAAT
1 AAAAAT
167821 AAATTTATTA
Statistics
Matches: 33, Mismatches: 2, Indels: 5
0.82 0.05 0.12
Matches are distributed among these distances:
30 5 0.15
31 18 0.55
32 10 0.30
ACGTcount: A:0.66, C:0.03, G:0.10, T:0.21
Consensus pattern (31 bp):
AAAAATGCAATAAAAAAAGAATTAAAAGTGA
Found at i:168506 original size:333 final size:337
Alignment explanation
Indices: 167962--168577 Score: 938
Period size: 333 Copynumber: 1.8 Consensus size: 337
167952 CTGTTGTTAA
*
167962 AATAATAATTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTATATTTTTA
1 AATAATAATTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTATATTATT-
* *
168027 AACAATTAATTTTAAAAGTCAATAAATTTTTTAAAAAATATATGAAATTTATAATTTTTTAAATT
65 -ACAATTAATTTTAAAAGTCAATAAATTTTTTAAAAAATATATAAAAATTATAATTTTTTAAATT
* * *
168092 ATAAAATACTTATCATCATCATCATCATCATTTTGTAAAATAAATAATGGTTATAAAAATTTTAT
129 ATAAAATACTTATCACCATCATCATCATCATTTTGTAAAAAAAATAATAGTTATAAAAATTTTAT
* * * * * *
168157 AAAATTATTGATATTTTAAAATATTTACCCTCAAAATTTTTC-TGTACTAAATTATACA-TATTG
194 AAAATTATTCATATTTTAAAATACTGACCCTC-AAAGTTTTCATATACTAAATTATA-AGTATGG
* *
168220 TATAATTTCATGCAAAAATTAAAATAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTA
257 TATAATTTCATGAAAAAATCAAAATAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTA
168285 AAAATAATAATTAATG
322 AAAATAATAATTAATG
* *
168301 AATAATAATTCATTTGATCCTTCAATTGTAATTACAAGTTTATTTTAATATTTTTT-TA-TATT-
1 AATAATAATTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTATATTATTA
* *
168363 CAATTAATTTTAAAAGTCAATAGA-TTTTTCAAAAATATATAAAAATTATAATTTTTTAAATTAT
66 CAATTAATTTTAAAAGTCAATAAATTTTTTAAAAAATATATAAAAATTATAATTTTTTAAATTAT
* * * * *
168427 AAAATATTTATTACCATCATCATTATCATTTTGTAAAAAAAATACTAGTTATAAAACTTTTATAA
131 AAAATACTTATCACCATCATCATCATCATTTTGTAAAAAAAATAATAGTTATAAAAATTTTATAA
*
168492 AATTATTCATATTTTAAAATACTGACCCTCAAAGTTTTCATATACTAAATTATAAGTATGGTGTA
196 AATTATTCATATTTTAAAATACTGACCCTCAAAGTTTTCATATACTAAATTATAAGTATGGTATA
168557 ATTTCATGAAAAAATCAAAAT
261 ATTTCATGAAAAAATCAAAAT
168578 TTATCGAGTT
Statistics
Matches: 251, Mismatches: 24, Indels: 10
0.88 0.08 0.04
Matches are distributed among these distances:
332 9 0.04
333 160 0.64
334 23 0.09
337 3 0.01
338 2 0.01
339 54 0.22
ACGTcount: A:0.44, C:0.08, G:0.05, T:0.43
Consensus pattern (337 bp):
AATAATAATTCATTTGATCCCTCAATTGTAATTAAAAGTTTATTTTAATATTTTTTATATTATTA
CAATTAATTTTAAAAGTCAATAAATTTTTTAAAAAATATATAAAAATTATAATTTTTTAAATTAT
AAAATACTTATCACCATCATCATCATCATTTTGTAAAAAAAATAATAGTTATAAAAATTTTATAA
AATTATTCATATTTTAAAATACTGACCCTCAAAGTTTTCATATACTAAATTATAAGTATGGTATA
ATTTCATGAAAAAATCAAAATAATTTTATTAAAAATGAATAAACATTATTAACTGTTGTTAAAAA
TAATAATTAATG
Found at i:168998 original size:88 final size:88
Alignment explanation
Indices: 168849--169011 Score: 272
Period size: 88 Copynumber: 1.9 Consensus size: 88
168839 TGCCTTCATA
* *
168849 CAAACGGTGTTAGATCAGTAAATAAATATGAAAAGGTATATGACAGGTAAATAAAGTTGGTCAGG
1 CAAACGGTGTTAGATCAGTAAATAAAAATGAAAAGGAATATGACAGGTAAATAAAGTTGGTCAGG
*
168914 GTGATTTTTGCCACGTCTTCCTG
66 GTGATATTTGCCACGTCTTCCTG
* * *
168937 CAAACGGTGTTAGATCAGTAAATAAAAATGAAAATGAATATGATAGGTAAATAAAGTTGGTCATG
1 CAAACGGTGTTAGATCAGTAAATAAAAATGAAAAGGAATATGACAGGTAAATAAAGTTGGTCAGG
169002 GTGATATTTG
66 GTGATATTTG
169012 GGTGTTATGC
Statistics
Matches: 69, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
88 69 1.00
ACGTcount: A:0.38, C:0.09, G:0.23, T:0.29
Consensus pattern (88 bp):
CAAACGGTGTTAGATCAGTAAATAAAAATGAAAAGGAATATGACAGGTAAATAAAGTTGGTCAGG
GTGATATTTGCCACGTCTTCCTG
Found at i:182687 original size:18 final size:17
Alignment explanation
Indices: 182661--182696 Score: 54
Period size: 18 Copynumber: 2.1 Consensus size: 17
182651 ATATTTATTA
182661 ATTTCTAATATATATAAT
1 ATTTCTAATAT-TATAAT
*
182679 ATTTTTAATATTATAAT
1 ATTTCTAATATTATAAT
182696 A
1 A
182697 AAATAATCAA
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
17 7 0.41
18 10 0.59
ACGTcount: A:0.44, C:0.03, G:0.00, T:0.53
Consensus pattern (17 bp):
ATTTCTAATATTATAAT
Found at i:182728 original size:124 final size:122
Alignment explanation
Indices: 182595--182819 Score: 260
Period size: 124 Copynumber: 1.8 Consensus size: 122
182585 TTTAATATTA
* * *
182595 ATAAAATATTTTAATATCATTTTAATCAA-A-ATATTAATTAT-TAAAACATTTAAAATATATTT
1 ATAAAATATTAT-ATATCATTTTAAT-AATATATAATAAATATATAAAACATTTAAAAT-TATTT
* *
182657 ATTAATTTCTAATATATATAATATTTTTAATATTA-TAATAAAATAATCAATTATATAATAAT
63 ATTAATTTC--ATATAAATAATATTATTAA-ATTATTAATAAAATAATCAATTATATAATAAT
* * * * * * *
182719 ATAAGATATTATATTTTATTTTAATAATATATAATAAATATATAATATATTTTATATTATTTATT
1 ATAAAATATTATATATCATTTTAATAATATATAATAAATATATAAAACATTTAAAATTATTTATT
182784 AATTTCATATAAATAATATTATTAAATTATTAATAA
66 AATTTCATATAAATAATATTATTAAATTATTAATAA
182820 TGAATAATAT
Statistics
Matches: 85, Mismatches: 12, Indels: 10
0.79 0.11 0.09
Matches are distributed among these distances:
121 4 0.05
122 25 0.29
123 12 0.14
124 33 0.39
125 11 0.13
ACGTcount: A:0.49, C:0.03, G:0.00, T:0.48
Consensus pattern (122 bp):
ATAAAATATTATATATCATTTTAATAATATATAATAAATATATAAAACATTTAAAATTATTTATT
AATTTCATATAAATAATATTATTAAATTATTAATAAAATAATCAATTATATAATAAT
Found at i:182768 original size:20 final size:19
Alignment explanation
Indices: 182666--182768 Score: 56
Period size: 20 Copynumber: 5.4 Consensus size: 19
182656 TATTAATTTC
* *
182666 TAATATATATAAT-ATTTT
1 TAATATATATAATAATATA
*
182684 TAATAT-TATAATAAAATAA
1 TAATATATATAATAATAT-A
182703 TCAAT-TATATAATAATATA
1 T-AATATATATAATAATATA
** *
182722 -AGATAT-TAT-ATTTTATTT
1 TA-ATATATATAATAATA-TA
182740 TAATAATATATAATAAATATA
1 TAAT-ATATATAAT-AATATA
182761 TAATATAT
1 TAATATAT
182769 TTTATATTAT
Statistics
Matches: 63, Mismatches: 10, Indels: 22
0.66 0.11 0.23
Matches are distributed among these distances:
17 11 0.17
18 16 0.25
19 7 0.11
20 20 0.32
21 7 0.11
22 2 0.03
ACGTcount: A:0.51, C:0.01, G:0.01, T:0.47
Consensus pattern (19 bp):
TAATATATATAATAATATA
Found at i:182802 original size:27 final size:26
Alignment explanation
Indices: 182772--182857 Score: 75
Period size: 27 Copynumber: 3.1 Consensus size: 26
182762 AATATATTTT
*
182772 ATATTATTTATTAATTTCAT-ATAAATA
1 ATATTATTTATT-A-TTAATAATAAATA
* *
182799 ATATTATTAAATTATTAATAATGAATA
1 ATATTATT-TATTATTAATAATAAATA
*
182826 ATATTATTTATATATTTAATATTAATATA
1 ATATTATTTAT-TA-TTAATAATAA-ATA
182855 ATA
1 ATA
182858 ATCTAATAAT
Statistics
Matches: 48, Mismatches: 6, Indels: 8
0.77 0.10 0.13
Matches are distributed among these distances:
26 6 0.12
27 25 0.52
28 11 0.23
29 6 0.12
ACGTcount: A:0.48, C:0.01, G:0.01, T:0.50
Consensus pattern (26 bp):
ATATTATTTATTATTAATAATAAATA
Found at i:182833 original size:19 final size:18
Alignment explanation
Indices: 182809--182877 Score: 52
Period size: 19 Copynumber: 3.6 Consensus size: 18
182799 ATATTATTAA
182809 ATTATTAATAATGAATAAT
1 ATTATTAATAAT-AATAAT
* *
182828 ATTATTTAT-ATATTTAAT
1 ATTATTAATAATA-ATAAT
182846 ATTAATATAATAATCTAATAAT
1 ATT-AT-TAATAA--TAATAAT
182868 ATT-TTAATAA
1 ATTATTAATAA
182878 AGATATTTAA
Statistics
Matches: 40, Mismatches: 4, Indels: 12
0.71 0.07 0.21
Matches are distributed among these distances:
17 1 0.03
18 9 0.22
19 16 0.40
20 4 0.10
21 1 0.03
22 7 0.17
23 2 0.05
ACGTcount: A:0.49, C:0.01, G:0.01, T:0.48
Consensus pattern (18 bp):
ATTATTAATAATAATAAT
Found at i:184664 original size:20 final size:20
Alignment explanation
Indices: 184617--184664 Score: 51
Period size: 20 Copynumber: 2.4 Consensus size: 20
184607 CTCCGAAATA
* *
184617 TTCTAGAAAATTCTACACTT
1 TTCTAGAAAACTCTACAATT
* * *
184637 CTCCAGAAAACTCTAGAATT
1 TTCTAGAAAACTCTACAATT
184657 TTCTAGAA
1 TTCTAGAA
184665 TATTTCCAAT
Statistics
Matches: 21, Mismatches: 7, Indels: 0
0.75 0.25 0.00
Matches are distributed among these distances:
20 21 1.00
ACGTcount: A:0.38, C:0.21, G:0.08, T:0.33
Consensus pattern (20 bp):
TTCTAGAAAACTCTACAATT
Done.