genome.fa.s7190.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007190.1 Hibiscus syriacus cultivar Beakdansim tig00018945_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100138

Tables:   1   

This is table  1  of  1  ( 62 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2694--2741	18	2.7	18	87	3	71	8	14	0	77	0.99
2693--2745	17	2.9	18	75	13	54	7	15	0	77	0.98
5531--5576	12	3.8	12	85	0	65	56	8	13	21	1.63
7098--7158	20	3.0	20	71	4	61	70	0	3	26	1.02
7761--7798	20	1.9	19	85	15	51	68	0	0	31	0.90
7672--7891	118	1.9	118	80	5	266	45	8	8	37	1.65
7984--8016	14	2.4	14	90	5	50	69	0	0	30	0.88
8489--8518	11	2.7	11	94	0	51	3	33	0	63	1.11
12799--12830	16	2.0	16	93	0	55	40	0	0	59	0.97
13272--13296	13	1.9	13	100	0	50	20	24	16	40	1.91
24698--24750	20	2.7	20	82	5	63	43	24	18	13	1.86
24716--24961	60	4.0	62	80	9	197	37	23	17	20	1.94
24759--24968	20	10.4	20	84	7	255	37	24	17	20	1.94
24736--24968	40	5.8	40	88	7	294	36	24	17	21	1.94
25650--25696	24	2.0	24	87	8	69	25	14	21	38	1.92
25869--25893	12	2.1	12	100	0	50	72	0	28	0	0.86
27251--27321	33	2.2	33	89	0	106	47	16	22	12	1.80
27504--27558	22	2.5	22	81	0	74	20	16	40	23	1.91
27705--27859	40	3.8	40	83	4	195	17	18	26	38	1.92
27706--27859	20	7.7	20	82	7	177	17	18	26	37	1.93
27846--27928	21	4.0	21	73	6	78	25	16	24	33	1.96
27826--27924	42	2.4	43	77	11	100	21	18	23	37	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31449--31512	30	2.1	30	100	0	128	46	12	12	28	1.78
33188--33257	23	3.0	23	89	0	104	34	22	14	28	1.93
33422--33482	27	2.2	27	82	8	70	36	22	9	31	1.87
49272--49368	23	4.3	23	84	8	105	35	25	16	22	1.95
49538--49598	27	2.2	27	82	8	70	36	22	9	31	1.87
51361--51385	12	2.1	12	100	0	50	32	0	0	68	0.90
56364--56451	3	28.7	3	79	4	86	40	2	0	56	1.11
56364--56451	12	7.7	12	77	18	98	40	2	0	56	1.11
57700--57751	19	2.5	19	84	12	59	23	7	3	65	1.35
57720--57757	19	2.1	19	95	5	69	18	5	5	71	1.25
57852--57890	13	3.0	13	82	10	53	38	0	2	58	1.12
58515--58566	20	2.6	21	76	11	56	26	7	0	65	1.20
59983--60024	15	3.0	14	83	10	50	19	19	7	54	1.66
66735--66835	50	2.0	50	88	7	152	39	11	19	28	1.87
67207--67261	22	2.5	22	87	0	83	34	14	14	36	1.87
68275--68319	24	1.9	23	82	13	56	48	6	26	17	1.72
67660--68801	113	10.0	114	91	3	1644	37	12	19	29	1.89
69025--69112	3	28.7	3	79	4	86	40	2	0	56	1.11
69025--69112	12	7.7	12	77	18	98	40	2	0	56	1.11
70381--70418	19	2.1	19	95	5	69	18	5	5	71	1.25
70518--70556	13	3.0	13	82	10	53	38	0	2	58	1.12
74744--74803	27	2.2	27	85	5	77	51	11	11	25	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
75752--75804	23	2.4	23	81	15	67	18	7	11	62	1.52
76534--76578	12	3.7	12	85	8	56	20	2	4	73	1.11
80225--80275	20	2.8	17	78	18	57	49	1	7	41	1.43
80674--80768	17	5.7	15	75	20	66	8	4	7	80	1.03
80683--80763	17	4.6	17	80	10	83	9	3	6	80	1.01
80698--80798	38	2.9	34	78	15	107	11	5	2	79	1.02
80702--80794	24	3.9	24	72	13	66	12	5	3	78	1.04
81083--81130	17	2.7	18	84	12	64	37	6	18	37	1.76
82178--82236	22	2.7	22	100	0	118	25	13	23	37	1.92
82178--82273	44	2.2	44	82	0	111	23	10	25	40	1.86
82596--82636	16	2.4	18	80	19	61	41	0	4	53	1.22
82725--82763	19	2.1	19	95	0	69	51	2	5	41	1.38
83481--83698	109	2.0	109	89	1	330	30	22	10	36	1.88
85483--85531	24	2.0	24	96	0	89	28	14	32	24	1.94
97159--97411	65	3.9	65	86	2	314	41	13	17	26	1.87
97751--97850	36	2.7	37	81	3	121	37	8	23	32	1.84
99003--99054	16	3.2	16	86	2	68	1	19	5	73	1.14
98998--99027	11	2.8	11	95	5	53	0	16	6	76	0.99

Tables:   1

The End!