Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: VEPZ01007193.1 Hibiscus syriacus cultivar Beakdansim tig00018958_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 71932
ACGTcount: A:0.33, C:0.17, G:0.16, T:0.34
Found at i:11019 original size:24 final size:24
Alignment explanation
Indices: 10983--11042 Score: 75
Period size: 24 Copynumber: 2.5 Consensus size: 24
10973 TAACTTGTGC
* * *
10983 TCGTGCTCATGGTTGTGGTCATTG
1 TCGTGGTCGTGGTTGTGGTCATGG
* *
11007 TCTTGGTCGTGGTTGTGTTCATGG
1 TCGTGGTCGTGGTTGTGGTCATGG
11031 TCGTGGTCGTGG
1 TCGTGGTCGTGG
11043 CTCGTTCCAA
Statistics
Matches: 30, Mismatches: 6, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
24 30 1.00
ACGTcount: A:0.05, C:0.15, G:0.38, T:0.42
Consensus pattern (24 bp):
TCGTGGTCGTGGTTGTGGTCATGG
Found at i:15999 original size:53 final size:53
Alignment explanation
Indices: 15913--16015 Score: 143
Period size: 53 Copynumber: 1.9 Consensus size: 53
15903 TAAGGTAACA
*
15913 AAATGGTAATTCACAAACTCATTACAAAAACCATGGGTGCACACATAGTGTTG
1 AAATGGTAATTCACAAACTCATTACAAAAACCATGGATGCACACATAGTGTTG
* * ** * *
15966 AAATGGTTATTCACAAACTTATTATGAATACCATGGATGTACACATAGTG
1 AAATGGTAATTCACAAACTCATTACAAAAACCATGGATGCACACATAGTG
16016 CCGAAAGTAC
Statistics
Matches: 43, Mismatches: 7, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
53 43 1.00
ACGTcount: A:0.39, C:0.17, G:0.17, T:0.28
Consensus pattern (53 bp):
AAATGGTAATTCACAAACTCATTACAAAAACCATGGATGCACACATAGTGTTG
Found at i:16224 original size:22 final size:22
Alignment explanation
Indices: 16199--16244 Score: 74
Period size: 22 Copynumber: 2.1 Consensus size: 22
16189 GTTAAAACAA
16199 TATAGAAGTTCATAATCTATTT
1 TATAGAAGTTCATAATCTATTT
* *
16221 TATAGAATTTCATCATCTATTT
1 TATAGAAGTTCATAATCTATTT
16243 TA
1 TA
16245 GAGCATTCAT
Statistics
Matches: 22, Mismatches: 2, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
22 22 1.00
ACGTcount: A:0.35, C:0.11, G:0.07, T:0.48
Consensus pattern (22 bp):
TATAGAAGTTCATAATCTATTT
Found at i:16260 original size:21 final size:22
Alignment explanation
Indices: 16202--16260 Score: 59
Period size: 22 Copynumber: 2.7 Consensus size: 22
16192 AAAACAATAT
* * *
16202 AGAAGTTCATAATCTATTTTAT
1 AGAATTTCATACTCTATTTTAG
16224 AGAATTTCAT-CATCTATTTTAG
1 AGAATTTCATAC-TCTATTTTAG
*
16246 AGCA-TTCATACTCTA
1 AGAATTTCATACTCTA
16261 AAATTATTCG
Statistics
Matches: 31, Mismatches: 4, Indels: 5
0.77 0.10 0.12
Matches are distributed among these distances:
21 9 0.29
22 22 0.71
ACGTcount: A:0.34, C:0.15, G:0.08, T:0.42
Consensus pattern (22 bp):
AGAATTTCATACTCTATTTTAG
Found at i:16765 original size:21 final size:21
Alignment explanation
Indices: 16740--16792 Score: 88
Period size: 21 Copynumber: 2.5 Consensus size: 21
16730 ACCTTCACAT
16740 CAGTATCGATACTTCTTCAAA
1 CAGTATCGATACTTCTTCAAA
* *
16761 CAGTATCGATACTTTTTCAAC
1 CAGTATCGATACTTCTTCAAA
16782 CAGTATCGATA
1 CAGTATCGATA
16793 TTGTTCTTCC
Statistics
Matches: 30, Mismatches: 2, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
21 30 1.00
ACGTcount: A:0.32, C:0.23, G:0.11, T:0.34
Consensus pattern (21 bp):
CAGTATCGATACTTCTTCAAA
Found at i:24110 original size:32 final size:32
Alignment explanation
Indices: 24052--24115 Score: 94
Period size: 32 Copynumber: 2.0 Consensus size: 32
24042 TACTTATTAG
* *
24052 TTTTAATTTTTTTTAAAACATTTAAAATTGAT
1 TTTTAATTATTTTTAAAACATGTAAAATTGAT
24084 TTTTAATTGATTTTTAAAA-ATGTAAAATTGAT
1 TTTTAATT-ATTTTTAAAACATGTAAAATTGAT
24116 ACTTTTATTT
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
32 20 0.69
33 9 0.31
ACGTcount: A:0.39, C:0.02, G:0.06, T:0.53
Consensus pattern (32 bp):
TTTTAATTATTTTTAAAACATGTAAAATTGAT
Found at i:26128 original size:2 final size:2
Alignment explanation
Indices: 26121--26145 Score: 50
Period size: 2 Copynumber: 12.5 Consensus size: 2
26111 TCAATCTACA
26121 AT AT AT AT AT AT AT AT AT AT AT AT A
1 AT AT AT AT AT AT AT AT AT AT AT AT A
26146 ATTTATGAAA
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 23 1.00
ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48
Consensus pattern (2 bp):
AT
Found at i:29166 original size:53 final size:53
Alignment explanation
Indices: 29056--29157 Score: 168
Period size: 53 Copynumber: 1.9 Consensus size: 53
29046 ACTAAGATAA
* * *
29056 CGAAATGGTAATTCACAAACTCATTAGGAATACCATGGGTGCACACATAACGC
1 CGAAATGATAATTCACAAACTAATTAGGAATACCATGGATGCACACATAACGC
*
29109 CGAAATGATAATTCACAAACTAATTATGAATACCATGGATGCACACATA
1 CGAAATGATAATTCACAAACTAATTAGGAATACCATGGATGCACACATA
29158 GTTCCGAAAG
Statistics
Matches: 45, Mismatches: 4, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
53 45 1.00
ACGTcount: A:0.41, C:0.21, G:0.16, T:0.23
Consensus pattern (53 bp):
CGAAATGATAATTCACAAACTAATTAGGAATACCATGGATGCACACATAACGC
Found at i:33209 original size:21 final size:22
Alignment explanation
Indices: 33170--33215 Score: 69
Period size: 21 Copynumber: 2.1 Consensus size: 22
33160 AAATTTAAAA
33170 AATTATAAAATATTGAAAT-TT
1 AATTATAAAATATTGAAATATT
33191 AATTATAAAATATAT-AAATATT
1 AATTATAAAATAT-TGAAATATT
33213 AAT
1 AAT
33216 GTTAAATATT
Statistics
Matches: 23, Mismatches: 0, Indels: 3
0.88 0.00 0.12
Matches are distributed among these distances:
21 17 0.74
22 6 0.26
ACGTcount: A:0.57, C:0.00, G:0.02, T:0.41
Consensus pattern (22 bp):
AATTATAAAATATTGAAATATT
Found at i:37552 original size:56 final size:56
Alignment explanation
Indices: 37394--37749 Score: 508
Period size: 56 Copynumber: 6.5 Consensus size: 56
37384 AAAGTTTATA
* * * * * *
37394 CACTTAGTATAAAATTCCT-AGTTTTGCACATATAGTGCTCATACAGAAATTCATC
1 CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
* *
37449 CACTTAGTATG-ATTTCTTAA-ATTTACACATAAAGTGCCCATACGGAAATTCATC
1 CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
*
37503 CACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGGAAATTCATC
1 CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
* * *
37559 CACTTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCCATATGGAAATTAATC
1 CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
* *
37615 CAC---GTATGAATTTCTTAAGTTTTAAACATATAGTGACCATACGGAAATTCATC
1 CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
* * *
37668 CACTTAGTATGAATTTCTTAAGTTCTACACATATAGTGCGCATACTGAAATTCATC
1 CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
*
37724 CACTTAGTATGAATTTCTTAATTTTT
1 CACTTAGTATGAATTTCTTAAGTTTT
37750 TGCATACTTA
Statistics
Matches: 268, Mismatches: 27, Indels: 11
0.88 0.09 0.04
Matches are distributed among these distances:
53 48 0.18
54 45 0.17
55 20 0.07
56 155 0.58
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (56 bp):
CACTTAGTATGAATTTCTTAAGTTTTACACATATAGTGCCCATACGGAAATTCATC
Found at i:37655 original size:109 final size:108
Alignment explanation
Indices: 37421--37749 Score: 466
Period size: 109 Copynumber: 3.0 Consensus size: 108
37411 CTAGTTTTGC
* * *
37421 ACATATAGTGCTCATACAGAAATTCATCCACTTAGTATG-ATTTCTTAAATTTACACATAAAGTG
1 ACATATAGTGC-CATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATATAGTG
* **
37485 CCCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGC
65 CCCATATGGAAATTCATCCAC-T-GTATGAATTTCTTAAGTTTTAA
37531 ACATATAGTGCCCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTGTACACATATAGT
1 ACATATAGTG-CCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTT-TACACATATAGT
*
37596 GCCCATATGGAAATTAATCCAC-GTATGAATTTCTTAAGTTTTAA
64 GCCCATATGGAAATTCATCCACTGTATGAATTTCTTAAGTTTTAA
37640 ACATATAGTGACCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTCTACACATATAGT
1 ACATATAGTG-CCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTT-TACACATATAGT
* *
37705 GCGCATACT-GAAATTCATCCACTTAGTATGAATTTCTTAATTTTT
64 GCCCATA-TGGAAATTCATCCAC-T-GTATGAATTTCTTAAGTTTT
37750 TGCATACTTA
Statistics
Matches: 200, Mismatches: 12, Indels: 12
0.89 0.05 0.05
Matches are distributed among these distances:
109 101 0.50
110 37 0.19
111 12 0.06
112 50 0.25
ACGTcount: A:0.33, C:0.18, G:0.12, T:0.36
Consensus pattern (108 bp):
ACATATAGTGCCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATATAGTGC
CCATATGGAAATTCATCCACTGTATGAATTTCTTAAGTTTTAA
Found at i:37666 original size:165 final size:164
Alignment explanation
Indices: 37394--37744 Score: 499
Period size: 165 Copynumber: 2.1 Consensus size: 164
37384 AAAGTTTATA
* * * * * * *
37394 CACTTAGTATAAAATTCCT-AGTTTTGCACATATAGTGCTCATACAGAAATTCATCCACTTAGTA
1 CACTTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCCATACAGAAATTAATCCAC-T-GTA
* *
37458 TGATTTCTTAAATTTACACATAAAGTGCCCATACGGAAATTCATCCACTTAGTATGAATTTCTTA
64 TGATTTCTTAAATTTAAACATAAAGTGACCATACGGAAATTCATCCACTTAGTATGAATTTCTTA
* *
37523 AGTTTTGCACATATAGTGCCCATACGGAAATTCATC
129 AGTTCTACACATATAGTGCCCATACGGAAATTCATC
**
37559 CACTTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCCATATGGAAATTAATCCAC-GTATG
1 CACTTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCCATACAGAAATTAATCCACTGTATG
* *
37623 AATTTCTTAAGTTTTAAACATATAGTGACCATACGGAAATTCATCCACTTAGTATGAATTTCTTA
66 -ATTTCTTAA-ATTTAAACATAAAGTGACCATACGGAAATTCATCCACTTAGTATGAATTTCTTA
* *
37688 AGTTCTACACATATAGTGCGCATACTGAAATTCATC
129 AGTTCTACACATATAGTGCCCATACGGAAATTCATC
37724 CACTTAGTATGAATTTCTTAA
1 CACTTAGTATGAATTTCTTAA
37745 TTTTTTGCAT
Statistics
Matches: 166, Mismatches: 17, Indels: 6
0.88 0.09 0.03
Matches are distributed among these distances:
163 5 0.03
164 9 0.05
165 119 0.72
166 33 0.20
ACGTcount: A:0.34, C:0.19, G:0.13, T:0.35
Consensus pattern (164 bp):
CACTTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCCATACAGAAATTAATCCACTGTATG
ATTTCTTAAATTTAAACATAAAGTGACCATACGGAAATTCATCCACTTAGTATGAATTTCTTAAG
TTCTACACATATAGTGCCCATACGGAAATTCATC
Found at i:37746 original size:27 final size:27
Alignment explanation
Indices: 37660--37746 Score: 70
Period size: 27 Copynumber: 3.1 Consensus size: 27
37650 ACCATACGGA
37660 AATTCATCCACTTAGTATGAATTTCTT
1 AATTCATCCACTTAGTATGAATTTCTT
* ** * * *
37687 AAGTTC-TACACATATAGTGCGCA-TACTGA
1 AA-TTCATCCAC-T-TAGTATGAATTTCT-T
37716 AATTCATCCACTTAGTATGAATTTCTT
1 AATTCATCCACTTAGTATGAATTTCTT
37743 AATT
1 AATT
37747 TTTTGCATAC
Statistics
Matches: 42, Mismatches: 12, Indels: 12
0.64 0.18 0.18
Matches are distributed among these distances:
27 16 0.38
28 14 0.33
29 12 0.29
ACGTcount: A:0.32, C:0.18, G:0.10, T:0.39
Consensus pattern (27 bp):
AATTCATCCACTTAGTATGAATTTCTT
Found at i:38186 original size:20 final size:20
Alignment explanation
Indices: 38161--38211 Score: 68
Period size: 19 Copynumber: 2.6 Consensus size: 20
38151 TTGTTTTGAA
* *
38161 TGGTATCGATACCTTCCCTT
1 TGGTATCGATACCTCCCCCT
38181 TGGTATCGATA-CTCCCCCT
1 TGGTATCGATACCTCCCCCT
*
38200 CGGTATCGATAC
1 TGGTATCGATAC
38212 TGATTGAATC
Statistics
Matches: 27, Mismatches: 3, Indels: 2
0.84 0.09 0.06
Matches are distributed among these distances:
19 16 0.59
20 11 0.41
ACGTcount: A:0.18, C:0.31, G:0.18, T:0.33
Consensus pattern (20 bp):
TGGTATCGATACCTCCCCCT
Found at i:39947 original size:56 final size:56
Alignment explanation
Indices: 39856--39973 Score: 227
Period size: 56 Copynumber: 2.1 Consensus size: 56
39846 TGAAGTTCAA
39856 TCGAGTACCCAATGACTCATGTAAAGACTTCCAGAACCTTGAGGTAAACCTTGGGTC
1 TCGA-TACCCAATGACTCATGTAAAGACTTCCAGAACCTTGAGGTAAACCTTGGGTC
39913 TCGATACCCAATGACTCATGTAAAGACTTCCAGAACCTTGAGGTAAACCTTGGGTC
1 TCGATACCCAATGACTCATGTAAAGACTTCCAGAACCTTGAGGTAAACCTTGGGTC
39969 TCGAT
1 TCGAT
39974 CGGATACTAT
Statistics
Matches: 61, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
56 57 0.93
57 4 0.07
ACGTcount: A:0.30, C:0.25, G:0.20, T:0.25
Consensus pattern (56 bp):
TCGATACCCAATGACTCATGTAAAGACTTCCAGAACCTTGAGGTAAACCTTGGGTC
Found at i:43799 original size:113 final size:113
Alignment explanation
Indices: 43665--44792 Score: 1461
Period size: 113 Copynumber: 10.0 Consensus size: 113
43655 ATAGAGTCAT
*
43665 GCAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
* *
43730 TTATGACCTTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTGAA
66 TTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTGAA
*
43778 GCAAAAGGTTGAACAAATTCTTCTCATTATGAATTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
* * * *
43843 TTATGAACTTTTACCTGGCAATGCTGATCCATCGAGTGATGGATTTG-A
66 TTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGAT-GAATTGAA
*
43891 GCAAAATGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* * *
43956 ATTATGACCTTCTACCTGGCAATGTTGATCCATCGAGTGATGGATTTG-A
65 ATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGAT-GAATTGAA
44005 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* * * * *
44070 ATTATGACCTTATACCTAGCAATGTTGATCCATCGAGTGATGGATTTG-A
65 ATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGAT-GAATTGAA
*
44119 GCAAAAGGTTGAACAAATTCTTCTCATTATGAA--T-TTCTTCTTCTTCAGATGACGAGTTCTTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT---GAGTTCTTC
* * *
44181 TCATTATGAAC-TCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAA
63 TCATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTGAA
* *
44231 ACAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTC-T--TCTTCAGATGACGAGTTCTTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT---GAGTTCTTC
* * * *
44293 TCATTATGAAC-TCTACCTGGAAATGTTAATCCATCAAATGATGAATTTAA
63 TCATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTGAA
* *
44343 ACAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTCTTCAGATGACGAGTTCTTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT---GAGTTCTTC
* * *
44408 TCATTATGAAC-TCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAA
63 TCATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTGAA
* * *
44458 ACAAAAGGCTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* * * *
44523 ATTATGAACTT-T-CTCTGGAAAAGCTGATCCATCAAGTGATGGATTTG-A
65 ATTATGAACTTCTAC-CTGGCAATGTTGATCCATCAAGTGAT-GAATTGAA
* *
44571 GCAAAAGATTGAACAAATTCTTCTCATTATGAA--T-TTCTTCTTCTTCAGATGACGAGTTCTTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGAT---GAGTTCTTC
* * * *
44633 TCATTATGAAC-TCTACCTGGAAATGTTAATCCATCAAATGATGAATTTAA
63 TCATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTGAA
* * *
44683 ACAAAAGGCTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTC
1 GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTC
* *
44748 ATTATGAACTT-T-CTCTGGAAAAGTTGATCCATCAAGTGATGAATT
65 ATTATGAACTTCTAC-CTGGCAATGTTGATCCATCAAGTGATGAATT
44793 TGACTTTTTG
Statistics
Matches: 933, Mismatches: 54, Indels: 56
0.89 0.05 0.05
Matches are distributed among these distances:
109 9 0.01
110 15 0.02
111 16 0.02
112 244 0.26
113 285 0.31
114 224 0.24
115 122 0.13
116 18 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (113 bp):
GCAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTCTTCAGATGAGTTCTTCTCA
TTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTGAA
Found at i:44518 original size:340 final size:337
Alignment explanation
Indices: 43666--44793 Score: 1637
Period size: 340 Copynumber: 3.3 Consensus size: 337
43656 TAGAGTCATG
*
43666 CAAAAGGTTGAACAAGTTCTTCTCATTATGAACTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * *
43730 TTATGACCTTCTACCTGGCAATGTTGATCCATCGAGTGATGAATTGAAGCAAAAGGTTGAACAAA
66 TTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAACAAA
43795 TTCTTCTCATTATGAATTTCTTCTTCC-TCTTCAGATGAGTTCTTCTCATTATGAACTTTTACCT
131 TTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAAC--TTACCT
* *
43859 GGCAATGCTGATCCATCGAGTGATGGATTTGAGCAAAATGTTGAACAAATTCTTCTCATTATGAA
193 GGCAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAA
** * * * *
43924 CTTCTTCTTCCTTCTTCA-GATGAGTTCTTCTCATTATGACCTTCTACCTGGCAATGTTGATCCA
258 CTTCTTCTT-CTTC-AGATGACGAGTTCTTCTCATTATGAAC-TCTACCTGGAAATGTTAATCCA
* * * * *
43988 TCGAGTGATGGATTTGAG
320 TCAAATGATGAATTTAAA
44006 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* * * * * *
44071 TTATGACCTTATACCTAGCAATGTTGATCCATCGAGTGATGGATTTGAGCAAAAGGTTGAACAAA
66 TTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAACAAA
44136 TTCTTCTCATTATGAA-T-TTCTT-CTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACC
131 TTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGAT---GAGTTCTTCTCATTATGAACT-TACC
* * * * * * *
44198 TGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAAGGTTGAACAAATTCTTCTTATTATGA
192 TGGCAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGA
44263 ACTTCTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCATC
257 ACTTCTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCATC
44328 AAATGATGAATTTAAA
322 AAATGATGAATTTAAA
*
44344 CAAAAGGTTGAACAAATTCTTCTTATTATGAACTTCTTCTTCC-TCTTCAGATGACGAGTTCTTC
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGAT---GAGTTCTTC
* * * *
44408 TCATTATGAAC-TCTACCTGGCAATGTTAATCCATCAAATGATGAATTTAAACAAAAGGCTGAAC
63 TCATTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAAC
* *
44472 AAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTTCT
128 AAATTCTTCTCATTATGAA-TTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTAC-
* * *
44537 CTGGAAAAGCTGATCCATCAAGTGATGGATTTGAGCAAAAGATTGAACAAATTCTTCTCATTATG
191 CTGGCAATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATG
*
44602 AATTTCTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCAT
256 AACTTCTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCAT
44667 CAAATGATGAATTTAAA
321 CAAATGATGAATTTAAA
* *
44684 CAAAAGGCTGAACAAATTCTTCTTATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
1 CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
* *
44749 TTATGAACTT-T-CTCTGGAAAAGTTGATCCATCAAGTGATGAATTT
66 TTATGAACTTCTAC-CTGGCAATGTTGATCCATCAAGTGATGAATTT
44794 GACTTTTTGC
Statistics
Matches: 715, Mismatches: 55, Indels: 38
0.88 0.07 0.05
Matches are distributed among these distances:
337 11 0.02
338 139 0.19
339 92 0.13
340 330 0.46
341 127 0.18
342 5 0.01
343 11 0.02
ACGTcount: A:0.29, C:0.20, G:0.14, T:0.37
Consensus pattern (337 bp):
CAAAAGGTTGAACAAATTCTTCTCATTATGAACTTCTTCTTCCTTCTTCAGATGAGTTCTTCTCA
TTATGAACTTCTACCTGGCAATGTTGATCCATCAAGTGATGAATTTAAGCAAAAGGTTGAACAAA
TTCTTCTCATTATGAATTCTTCTTCCTTCTTCAGATGAGTTCTTCTCATTATGAACTTACCTGGC
AATGCTGATCCATCAAGTGATGGATTTGAGCAAAAGGTTGAACAAATTCTTCTCATTATGAACTT
CTTCTTCTTCAGATGACGAGTTCTTCTCATTATGAACTCTACCTGGAAATGTTAATCCATCAAAT
GATGAATTTAAA
Found at i:45222 original size:22 final size:22
Alignment explanation
Indices: 45197--45251 Score: 83
Period size: 22 Copynumber: 2.5 Consensus size: 22
45187 GATAAAGCTT
*
45197 TCATCTTTGAAAAGAGAATCTG
1 TCATCTTTGAAAAGAGAATCTA
* *
45219 TCATCTTTAAAAAGGGAATCTA
1 TCATCTTTGAAAAGAGAATCTA
45241 TCATCTTTGAA
1 TCATCTTTGAA
45252 GAGTGTAGAT
Statistics
Matches: 29, Mismatches: 4, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
22 29 1.00
ACGTcount: A:0.36, C:0.15, G:0.15, T:0.35
Consensus pattern (22 bp):
TCATCTTTGAAAAGAGAATCTA
Found at i:47867 original size:92 final size:92
Alignment explanation
Indices: 47753--48274 Score: 805
Period size: 92 Copynumber: 5.8 Consensus size: 92
47743 TTCCAATGAT
* * * * *
47753 TGGTTCTG-GGTTTTATATCAAACCAAATCAGAGAACTCAAAGAACACTTCCAGAAGATGCTATT
1 TGGTTCTGTGG-TTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
*
47817 AGCACATTCCTCTTCCAAATTCAATAAT
65 AGCACATTCCTCTTCCAAATTCAATAAC
* *
47845 TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAATACTTCCTGAAGATGCTATGA
1 TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGA
47910 GCACATTCCTCTTCCAAATTC---AA-
66 GCACATTCCTCTTCCAAATTCAATAAC
* *
47933 T-GAT-TGAT--TT--TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATT
1 TGGTTCTG-TGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATG
47992 AGCACATTCCTCTTCCAAATTCAATAAC
65 AGCACATTCCTCTTCCAAATTCAATAAC
* * *
48020 TGGTTCTGTAGTTCATACCAAACTAGATCAGATAACTCACAGAACACTTCCAGAAGATGCTATGA
1 TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGA
48085 GCACATTCCTCTTCCAAATTCAATAAC
66 GCACATTCCTCTTCCAAATTCAATAAC
* *
48112 TGGTTCTGTGGTTCATACCAAACTAGATCAGATAACTCACAGAACACTTCCAGAAGATGCTATGA
1 TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGA
48177 GCACATTCCTCTTCCAAATTCAATAAC
66 GCACATTCCTCTTCCAAATTCAATAAC
*
48204 TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTA
1 TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGA
48269 GCACAT
66 GCACAT
48275 GGCATTTGTT
Statistics
Matches: 399, Mismatches: 19, Indels: 24
0.90 0.04 0.05
Matches are distributed among these distances:
83 68 0.17
85 2 0.01
86 4 0.01
87 4 0.01
88 4 0.01
89 4 0.01
90 2 0.01
92 309 0.77
93 2 0.01
ACGTcount: A:0.35, C:0.24, G:0.14, T:0.28
Consensus pattern (92 bp):
TGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATGA
GCACATTCCTCTTCCAAATTCAATAAC
Found at i:48078 original size:175 final size:180
Alignment explanation
Indices: 47765--48274 Score: 807
Period size: 175 Copynumber: 2.8 Consensus size: 180
47755 GTTCTGGGTT
* * *
47765 TTATATCAAACCAAATCAGAGAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTCT
1 TTATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTCT
* *
47830 TCCAAATTCAATAATTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAATACTTC
66 TCCAAATTCAATAACTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTC
*
47895 CTGAAGATGCTATGAGCACATTCCTCTTCCAAATTC-AA-T-GAT-TGAT-
131 CAGAAGATGCTATGAGCACATTCCTCTTCCAAATTCAAACTGGATCTG-TG
47941 TT-TACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTCT
1 TTATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTCT
* * *
48005 TCCAAATTCAATAACTGGTTCTGTAGTTCATACCAAACTAGATCAGATAACTCACAGAACACTTC
66 TCCAAATTCAATAACTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTC
*
48070 CAGAAGATGCTATGAGCACATTCCTCTTCCAAATTCAATAACTGGTTCTGTGG
131 CAGAAGATGCTATGAGCACATTCCTCTTCCAAATTC-A-AACTGGATCTGT-G
* * *
48123 TTCATACCAAACTAGATCAGATAACTCACAGAACACTTCCAGAAGATGCTATGAGCACATTCCTC
1 TT-ATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTC
48188 TTCCAAATTCAATAACTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTT
65 TTCCAAATTCAATAACTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTT
*
48253 CCAGAAGATGCTATTAGCACAT
130 CCAGAAGATGCTATGAGCACAT
48275 GGCATTTGTT
Statistics
Matches: 307, Mismatches: 17, Indels: 12
0.91 0.05 0.04
Matches are distributed among these distances:
175 154 0.50
176 2 0.01
178 2 0.01
179 1 0.00
180 3 0.01
181 2 0.01
182 2 0.01
184 141 0.46
ACGTcount: A:0.36, C:0.24, G:0.13, T:0.27
Consensus pattern (180 bp):
TTATACCAAACCAGATCAGATAACTCAAAGAACACTTCCAGAAGATGCTATTAGCACATTCCTCT
TCCAAATTCAATAACTGGTTCTGTGGTTCATACCAAACCAGATCAGATAACTCAAAGAACACTTC
CAGAAGATGCTATGAGCACATTCCTCTTCCAAATTCAAACTGGATCTGTG
Found at i:50550 original size:15 final size:16
Alignment explanation
Indices: 50530--50560 Score: 55
Period size: 15 Copynumber: 2.0 Consensus size: 16
50520 TCAATTTTCC
50530 TTTTTCTTC-TTCTTT
1 TTTTTCTTCTTTCTTT
50545 TTTTTCTTCTTTCTTT
1 TTTTTCTTCTTTCTTT
50561 GCTGGATGAG
Statistics
Matches: 15, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
15 9 0.60
16 6 0.40
ACGTcount: A:0.00, C:0.19, G:0.00, T:0.81
Consensus pattern (16 bp):
TTTTTCTTCTTTCTTT
Found at i:50861 original size:2 final size:2
Alignment explanation
Indices: 50854--50889 Score: 72
Period size: 2 Copynumber: 18.0 Consensus size: 2
50844 ACAACAAAGG
50854 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
50890 TAAAGGATAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 34 1.00
ACGTcount: A:0.50, C:0.00, G:0.00, T:0.50
Consensus pattern (2 bp):
AT
Found at i:53155 original size:7 final size:7
Alignment explanation
Indices: 53143--53175 Score: 50
Period size: 7 Copynumber: 4.7 Consensus size: 7
53133 AAAAGTATGC
53143 ATGCAAA
1 ATGCAAA
53150 ATGCAAA
1 ATGCAAA
53157 GATGCAAA
1 -ATGCAAA
53165 ATG-AAA
1 ATGCAAA
53171 ATGCA
1 ATGCA
53176 TGTATGAAAA
Statistics
Matches: 24, Mismatches: 0, Indels: 4
0.86 0.00 0.14
Matches are distributed among these distances:
6 6 0.25
7 11 0.46
8 7 0.29
ACGTcount: A:0.55, C:0.12, G:0.18, T:0.15
Consensus pattern (7 bp):
ATGCAAA
Found at i:59836 original size:55 final size:55
Alignment explanation
Indices: 59736--60213 Score: 673
Period size: 55 Copynumber: 8.7 Consensus size: 55
59726 CCTGCTACCA
* * * * * *
59736 ATACGAAAATTTATACACTTAGTATAAATTTCCT-AGTTTTGCACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAG-TTTACACATATAGTGCCC
* * *
59791 ATACAGAAATTCATCCACTTAGTATGAATTTCTTAAATTTACACATAAAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATATAGTGCCC
*
59846 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAG-TTTACACATATAGTGCCC
* * *
59902 ATACGAAAATTCATCCACTTAGTATGAATTTCTTAAATTTACACATAAAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATATAGTGCCC
**
59957 ATACGGAAATTCATCCA-TTAGTATGAATTTCTTAAGTTTTGACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATATAGTGCCC
60011 ATACGGAAATTCATCCA-TTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTT-TACACATATAGTGCCC
* * *
60066 ATATGGAAATTCATCCAC---GTATGAATTTCTTAAGTTTTAAACATATAGTGACC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAG-TTTACACATATAGTGCCC
* * *
60119 ATACGGAAATCCATCCACTTAGTATGAA-TTCTTAAGTTCTACATATATAGTGCGC
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTT-TACACATATAGTGCCC
60174 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTT
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTT
60214 TTGCATACTT
Statistics
Matches: 379, Mismatches: 34, Indels: 20
0.88 0.08 0.05
Matches are distributed among these distances:
53 46 0.12
54 75 0.20
55 189 0.50
56 69 0.18
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (55 bp):
ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTACACATATAGTGCCC
Found at i:59901 original size:111 final size:112
Alignment explanation
Indices: 59736--60214 Score: 717
Period size: 111 Copynumber: 4.4 Consensus size: 112
59726 CCTGCTACCA
* * * * * *
59736 ATACGAAAATTTATACACTTAGTATAAATTTCCT-AGTTTTGCACATATAGTGCCCATACAGAAA
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGGAAA
59800 TTCATCCACTTAGTATGAATTTCTTAAATT-TACACATAAAGTGCCC
66 TTCATCCACTTAGTATGAATTTCTTAAATTCTACACATAAAGTGCCC
*
59846 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGAAAA
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGGAAA
59911 TTCATCCACTTAGTATGAATTTCTTAAATT-TACACATAAAGTGCCC
66 TTCATCCACTTAGTATGAATTTCTTAAATTCTACACATAAAGTGCCC
59957 ATACGGAAATTCATCCA-TTAGTATGAATTTCTTAAGTTTTG-ACATATAGTGCCCATACGGAAA
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGGAAA
* * *
60020 TTCATCCA-TTAGTATGAATTTCTTAAGTTGTACACATATAGTGCCC
66 TTCATCCACTTAGTATGAATTTCTTAAATTCTACACATAAAGTGCCC
* ** *
60066 ATATGGAAATTCATCCAC---GTATGAATTTCTTAAGTTTTAAACATATAGTGACCATACGGAAA
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGGAAA
* * * * *
60128 TCCATCCACTTAGTATGAA-TTCTTAAGTTCTACATATATAGTGCGC
66 TTCATCCACTTAGTATGAATTTCTTAAATTCTACACATAAAGTGCCC
60174 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTT
1 ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTT
60215 TGCATACTTA
Statistics
Matches: 343, Mismatches: 18, Indels: 15
0.91 0.05 0.04
Matches are distributed among these distances:
107 20 0.06
108 89 0.26
109 70 0.20
110 53 0.15
111 111 0.32
ACGTcount: A:0.34, C:0.18, G:0.13, T:0.35
Consensus pattern (112 bp):
ATACGGAAATTCATCCACTTAGTATGAATTTCTTAAGTTTTGCACATATAGTGCCCATACGGAAA
TTCATCCACTTAGTATGAATTTCTTAAATTCTACACATAAAGTGCCC
Found at i:63491 original size:22 final size:22
Alignment explanation
Indices: 63465--63540 Score: 122
Period size: 22 Copynumber: 3.6 Consensus size: 22
63455 ATAACCCTAC
63465 ATGGTATCGATACTACCATATT
1 ATGGTATCGATACTACCATATT
63487 ATGGTATCGATACTACCATATT
1 ATGGTATCGATACTACCATATT
*
63509 ATGGTATCGATAC--CC-TACT
1 ATGGTATCGATACTACCATATT
63528 ATGGTATCGATAC
1 ATGGTATCGATAC
63541 CATTTTTGCA
Statistics
Matches: 53, Mismatches: 1, Indels: 3
0.93 0.02 0.05
Matches are distributed among these distances:
19 16 0.30
20 2 0.04
22 35 0.66
ACGTcount: A:0.30, C:0.20, G:0.16, T:0.34
Consensus pattern (22 bp):
ATGGTATCGATACTACCATATT
Found at i:68055 original size:15 final size:15
Alignment explanation
Indices: 68031--68066 Score: 56
Period size: 15 Copynumber: 2.5 Consensus size: 15
68021 CAATTTCCTT
68031 TGCTAATTTAATTTA
1 TGCTAATTTAATTTA
*
68046 TGCTAGTTTAATTTA
1 TGCTAATTTAATTTA
68061 TG-TAAT
1 TGCTAAT
68067 GTAAAAAATT
Statistics
Matches: 19, Mismatches: 2, Indels: 1
0.86 0.09 0.05
Matches are distributed among these distances:
14 3 0.16
15 16 0.84
ACGTcount: A:0.31, C:0.06, G:0.11, T:0.53
Consensus pattern (15 bp):
TGCTAATTTAATTTA
Found at i:69120 original size:18 final size:20
Alignment explanation
Indices: 69085--69124 Score: 66
Period size: 20 Copynumber: 2.1 Consensus size: 20
69075 TCATTTTACC
69085 ATAAAAAATCATTCAATAAA
1 ATAAAAAATCATTCAATAAA
69105 ATAAAAAAT-ATT-AATAAA
1 ATAAAAAATCATTCAATAAA
69123 AT
1 AT
69125 TATACAAAAT
Statistics
Matches: 20, Mismatches: 0, Indels: 2
0.91 0.00 0.09
Matches are distributed among these distances:
18 8 0.40
19 3 0.15
20 9 0.45
ACGTcount: A:0.68, C:0.05, G:0.00, T:0.28
Consensus pattern (20 bp):
ATAAAAAATCATTCAATAAA
Found at i:71600 original size:3 final size:3
Alignment explanation
Indices: 71594--71646 Score: 81
Period size: 3 Copynumber: 17.7 Consensus size: 3
71584 TATCATTTAC
*
71594 TAT TAT TAT TAT TAT GAT TAT TAT TA- TAT TAT TAT TAT TAT TATT
1 TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TAT TA-T
71639 TAT TAT TA
1 TAT TAT TA
71647 CAAACGGGCC
Statistics
Matches: 46, Mismatches: 2, Indels: 4
0.88 0.04 0.08
Matches are distributed among these distances:
2 2 0.04
3 41 0.89
4 3 0.07
ACGTcount: A:0.34, C:0.00, G:0.02, T:0.64
Consensus pattern (3 bp):
TAT
Found at i:71627 original size:23 final size:24
Alignment explanation
Indices: 71588--71644 Score: 80
Period size: 23 Copynumber: 2.4 Consensus size: 24
71578 TTTTTTTATC
*
71588 ATTTACTATTATTATTATTATGATT
1 ATTTATTA-TATTATTATTATGATT
*
71613 A-TTATTATATTATTATTATTATT
1 ATTTATTATATTATTATTATGATT
71636 ATTTATTAT
1 ATTTATTAT
71645 TACAAACGGG
Statistics
Matches: 29, Mismatches: 2, Indels: 3
0.85 0.06 0.09
Matches are distributed among these distances:
23 16 0.55
24 12 0.41
25 1 0.03
ACGTcount: A:0.33, C:0.02, G:0.02, T:0.63
Consensus pattern (24 bp):
ATTTATTATATTATTATTATGATT
Done.