Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000072.1 Hibiscus syriacus cultivar Beakdansim tig00000126_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  49656

Tables:   1   

This is table  1  of  1  ( 36 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1281--1350
2
36.5
2
87
8
101
52
0
2
44
1.15
4988--5091
32
3.2
33
83
4
97
44
25
10
20
1.83
5019--5091
32
2.3
32
90
0
110
45
28
10
15
1.80
10483--10514
16
1.9
17
93
6
57
0
25
0
75
0.81
17363--17400
20
1.9
20
88
0
58
10
31
34
23
1.89
17427--17469
21
2.0
21
86
0
59
16
25
27
30
1.97
19557--19610
21
2.6
21
90
0
90
25
14
27
31
1.95
19599--19678
20
3.9
20
80
9
90
15
23
21
40
1.91
19784--19832
6
8.5
6
97
2
84
30
53
16
0
1.43
20316--20350
5
6.6
5
96
3
52
0
20
54
25
1.45
20319--20408
6
15.5
6
94
1
132
0
16
48
34
1.47
20509--20581
22
3.4
22
88
1
112
35
26
16
21
1.94
20919--21012
32
2.9
32
77
13
104
36
30
12
20
1.90
24907--24945
8
5.0
8
81
6
53
33
0
28
38
1.57
25013--25386
128
2.9
128
98
0
714
22
24
19
33
1.97
25780--25877
33
2.9
34
81
3
126
39
3
5
52
1.39
26395--26465
21
3.4
21
84
11
101
21
28
32
18
1.96
26469--26516
21
2.3
21
85
0
60
22
12
39
25
1.89
28237--28307
34
2.2
32
84
5
88
59
1
0
39
1.06
28251--28297
19
2.6
18
76
6
51
55
2
0
42
1.12
34881--34992
38
2.8
40
80
10
115
45
5
7
41
1.54
35029--35082
28
1.9
28
85
7
74
48
5
3
42
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34964--35334
73
5.2
71
77
14
263
44
3
8
43
1.50
34919--35276
34
10.1
34
73
16
216
44
4
6
43
1.51
35011--35189
72
2.5
71
85
8
227
47
5
5
41
1.49
35139--35217
27
2.9
27
86
3
97
46
5
7
40
1.54
35082--35264
100
1.8
98
88
4
278
45
3
6
43
1.48
35121--35251
64
2.1
62
83
7
158
46
4
6
42
1.49
35164--35339
39
4.8
38
79
12
172
42
1
9
46
1.45
35029--35276
134
1.8
136
85
5
351
46
4
6
43
1.47
35323--35357
17
2.0
18
88
5
54
31
0
5
62
1.18
35339--35382
20
2.3
19
80
11
54
29
2
2
65
1.16
36692--36744
25
2.2
24
83
10
63
22
9
1
66
1.31
36722--36765
22
2.0
21
82
4
52
22
9
4
63
1.42
44297--44329
17
1.9
17
100
0
66
42
12
15
30
1.83
44929--44972
17
2.6
17
100
0
88
40
11
6
40
1.68

Tables:   1

The End!