Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007201.1 Hibiscus syriacus cultivar Beakdansim tig00019004_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79120

Tables:   1   

This is table  1  of  1  ( 35 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--78
39
2.0
39
90
5
122
38
20
19
21
1.94
1--78
20
4.0
20
93
3
124
38
20
19
21
1.94
126--183
20
3.0
20
87
2
82
22
18
18
39
1.92
666--769
21
5.0
21
71
5
86
20
37
19
23
1.94
663--772
42
2.7
41
77
7
107
20
38
19
22
1.94
2176--2272
20
4.8
21
84
6
119
19
20
23
36
1.95
2185--2262
20
3.8
21
89
5
124
19
20
24
35
1.95
2185--2272
41
2.2
39
86
10
115
19
20
25
35
1.96
4103--4156
24
2.2
24
93
0
90
40
20
18
20
1.91
4103--4170
24
2.8
24
84
0
64
38
20
17
23
1.93
5008--5104
20
4.8
20
74
12
81
23
20
19
36
1.95
5018--5104
20
4.3
20
77
8
95
22
19
19
37
1.94
5018--5104
41
2.2
40
85
2
111
22
19
19
37
1.94
5094--5142
21
2.3
21
89
0
71
34
16
24
24
1.95
6018--6085
2
34.0
2
90
0
109
50
4
0
45
1.22
6018--6084
14
4.8
14
96
0
125
50
4
0
44
1.22
23850--23893
21
2.0
22
82
4
54
45
0
6
47
1.29
24182--24237
16
3.2
16
71
28
51
67
1
3
26
1.16
24182--24252
37
1.9
37
83
11
92
69
1
4
25
1.15
25523--25575
3
17.0
3
76
7
52
58
0
0
41
0.98
25516--25571
12
4.4
13
88
6
80
55
0
0
44
0.99
25549--25586
18
2.2
18
90
4
60
60
0
0
39
0.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28979--29040
31
2.0
31
100
0
124
19
25
22
32
1.97
31564--31602
15
2.6
15
95
0
69
28
7
17
46
1.76
37186--37261
31
2.5
31
82
8
100
40
14
5
39
1.68
40370--40437
10
6.5
11
78
13
56
48
8
1
41
1.43
40404--40437
2
17.0
2
100
0
68
50
0
0
50
1.00
40987--41068
2
41.0
2
100
0
164
50
0
0
50
1.00
63961--63988
3
9.3
3
100
0
56
32
0
0
67
0.91
63993--64022
2
15.5
2
93
6
53
50
0
0
50
1.00
67510--67544
18
2.0
17
88
5
52
42
0
0
57
0.99
67522--67555
15
2.3
15
90
5
52
44
0
0
55
0.99
77412--77578
60
2.8
60
80
5
160
33
18
5
42
1.73
77747--77908
60
2.7
59
77
11
168
42
6
18
32
1.76
77985--78014
3
10.0
3
100
0
60
33
0
0
66
0.92

Tables:   1

The End!