Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007205.1 Hibiscus syriacus cultivar Beakdansim tig00019033_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  53688

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4713--4760
3
16.0
3
95
0
87
64
0
2
33
1.05
4998--5096
36
2.8
36
84
6
121
47
6
10
36
1.62
5036--5149
35
3.1
34
73
20
97
44
4
7
42
1.53
5081--5178
39
2.5
40
80
12
105
43
3
5
47
1.40
5187--5215
10
3.0
10
95
5
51
37
0
0
62
0.96
5211--5259
19
2.7
18
78
12
55
12
14
0
73
1.10
6422--6480
15
4.3
14
71
16
52
23
8
1
66
1.29
15577--15606
3
10.0
3
100
0
60
66
0
0
33
0.92
17326--17374
24
2.0
24
84
7
64
24
2
2
71
1.07
18365--18406
18
2.3
18
84
8
50
23
4
0
71
1.05
18364--18398
12
2.9
12
82
0
52
25
2
0
71
1.00
30021--30053
2
16.5
2
100
0
66
48
0
0
51
1.00
31859--31926
3
22.3
3
84
14
86
69
0
0
30
0.89
32515--32596
42
2.0
42
85
2
112
36
19
18
25
1.94
32065--33253
257
4.7
257
84
5
1481
34
15
16
33
1.90
33011--33114
41
2.5
42
80
1
120
30
21
21
26
1.98
41457--41540
2
42.0
2
100
0
168
50
0
0
50
1.00
43426--43463
15
2.4
16
91
4
60
63
0
2
34
1.09
47183--47216
13
2.6
13
90
0
59
14
20
0
64
1.28
50758--50883
51
2.4
53
88
3
177
43
14
23
19
1.87
51572--51625
25
2.2
24
83
9
65
55
14
18
11
1.68
51888--52083
32
5.6
32
69
21
117
32
26
17
24
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51920--52115
40
5.3
40
65
26
126
31
24
17
26
1.97
51887--52132
72
3.4
72
90
0
384
32
25
17
25
1.97
52596--52688
33
2.7
36
86
11
140
50
5
8
35
1.56
52559--52688
35
3.7
34
81
9
138
48
5
8
37
1.57
52765--52789
3
8.3
3
100
0
50
32
0
0
68
0.90

Tables:   1

The End!