Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007206.1 Hibiscus syriacus cultivar Beakdansim tig00019037_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48304

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3555--3599
23
2.0
23
90
0
72
44
13
0
42
1.43
4124--4173
18
2.7
18
81
6
55
60
0
2
38
1.09
12681--12740
10
6.3
9
87
11
84
28
30
26
15
1.96
12681--12740
19
3.2
19
92
4
95
28
30
26
15
1.96
15207--15273
32
2.1
32
91
0
107
38
13
7
40
1.73
20927--20978
19
2.7
19
100
0
104
28
26
17
26
1.97
21399--21471
24
3.1
24
80
9
71
36
4
23
35
1.74
21413--21448
12
3.0
12
91
0
63
33
5
25
36
1.79
21413--21481
24
2.8
26
83
12
85
37
5
24
31
1.79
22037--22073
17
2.1
18
85
14
51
24
0
29
45
1.53
24265--24318
15
3.4
15
78
14
63
37
5
18
38
1.74
24257--24334
15
5.1
15
70
11
59
42
7
16
33
1.77
24717--24769
20
2.7
20
75
16
56
49
1
0
49
1.12
24725--24829
29
3.6
29
78
18
94
53
1
0
44
1.11
25070--25186
42
2.8
42
88
2
164
48
15
17
18
1.81
25440--25490
15
3.4
15
79
15
61
41
5
15
37
1.72
25435--25506
30
2.4
30
93
6
121
44
6
16
31
1.74
25489--25538
20
2.5
20
100
0
100
40
10
16
34
1.81
25863--25941
29
3.2
24
71
25
65
55
1
1
41
1.16
25900--26009
52
2.1
51
79
14
118
50
0
0
48
1.13
25971--26017
24
2.0
23
83
4
58
48
0
0
51
1.00
26230--26339
42
2.6
41
94
4
193
50
19
15
15
1.79
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26958--27071
56
2.0
56
100
0
228
33
19
16
30
1.94
39199--39238
18
2.2
18
100
0
80
10
27
10
52
1.66
40202--40247
22
2.1
22
87
0
65
28
30
21
19
1.98
40748--40811
21
3.0
21
88
4
101
26
23
26
23
2.00
46600--46647
24
2.0
24
84
11
64
45
16
4
33
1.67
47027--47072
22
2.1
22
100
0
92
23
30
23
21
1.99
47064--47098
11
3.2
11
100
0
70
25
28
17
28
1.97
47577--47640
21
3.0
21
88
4
101
26
23
26
23
2.00

Tables:   1

The End!