Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007208.1 Hibiscus syriacus cultivar Beakdansim tig00019045_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  79159

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8116--8155
18
2.2
18
100
0
80
10
27
10
52
1.66
9113--9158
22
2.1
22
87
0
65
28
30
21
19
1.98
9651--9714
21
3.0
21
88
4
101
26
23
26
23
2.00
15940--15985
22
2.1
22
100
0
92
23
30
23
21
1.99
16504--16567
21
3.0
21
88
4
101
26
23
26
23
2.00
22146--22193
26
2.0
25
84
12
64
39
0
0
60
0.97
27761--27786
13
2.0
13
100
0
52
38
0
0
61
0.96
27774--28048
22
12.5
22
85
5
378
43
0
8
47
1.34
28072--28130
31
1.9
31
89
0
91
44
6
5
44
1.52
28323--28416
41
2.3
41
96
0
170
42
24
11
21
1.86
31671--31697
2
13.5
2
100
0
54
51
0
0
48
1.00
34244--34288
23
2.0
23
86
8
65
42
22
2
33
1.66
35676--35720
20
2.5
18
80
19
58
24
24
11
40
1.87
35689--35726
20
1.9
20
100
0
76
23
28
10
36
1.88
36506--36563
23
2.6
23
91
5
93
41
3
10
44
1.55
36577--36611
13
2.8
13
91
4
54
57
0
0
42
0.99
39604--39644
8
5.2
8
82
5
57
34
0
29
36
1.58
39712--39953
126
1.9
127
99
0
477
21
25
20
32
1.98
40084--40172
34
2.7
32
75
10
90
58
2
0
39
1.11
40087--40159
15
4.7
15
70
18
51
58
1
0
39
1.06
41069--41142
14
5.3
15
65
15
59
48
1
0
50
1.09
41103--41168
32
2.0
33
85
2
89
48
0
0
51
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41051--41173
55
2.2
56
80
9
137
51
0
0
47
1.06
41671--41709
17
2.3
17
100
0
78
51
23
0
25
1.49
47880--47920
15
2.7
15
88
0
64
21
21
26
29
1.99
51554--51666
60
1.9
60
83
5
149
31
15
16
36
1.90
51545--51676
60
2.2
59
78
6
142
34
15
15
34
1.88
53259--53283
9
2.8
9
100
0
50
20
0
0
80
0.72
55560--55599
20
2.0
20
85
0
53
35
25
17
22
1.95
55609--55664
20
2.8
20
94
0
94
33
30
17
17
1.94
55693--55756
19
3.4
19
97
0
119
34
21
12
31
1.91
55693--55782
38
2.3
38
85
9
121
31
23
15
30
1.95
55934--55962
14
2.1
14
93
6
51
34
3
13
48
1.60
68452--68542
29
3.1
29
98
0
173
60
14
0
25
1.34
68758--68832
38
2.0
37
87
5
107
45
2
1
50
1.24
71421--71454
16
2.1
16
94
0
59
32
8
26
32
1.87
75960--76003
22
2.0
22
86
0
61
31
0
20
47
1.50
78863--78912
22
2.3
22
89
0
73
24
42
16
18
1.89
78993--79029
15
2.5
15
87
12
51
18
0
2
78
0.87

Tables:   1

The End!