genome.fa.s7209.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007209.1 Hibiscus syriacus cultivar Beakdansim tig00019052_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77104

Tables:   1   

This is table  1  of  1  ( 70 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4470--4519	26	1.9	26	87	0	73	58	10	20	12	1.62
5317--5373	26	2.2	26	83	0	69	26	17	26	29	1.97
5606--5665	32	2.0	29	87	9	84	10	13	10	66	1.44
6558--6623	29	2.3	28	76	7	69	62	6	0	31	1.20
6573--6621	17	2.9	17	78	9	55	67	6	0	26	1.14
6539--6626	12	7.7	11	72	15	63	60	4	0	35	1.17
6582--6641	17	3.5	17	84	6	68	65	6	0	28	1.18
12957--12989	2	16.5	2	100	0	66	51	0	0	48	1.00
17290--17330	17	2.4	17	88	8	57	21	4	0	73	1.02
18204--18247	13	3.4	13	96	0	79	38	9	27	25	1.86
22286--22341	5	10.8	5	83	7	67	14	3	3	78	1.02
22283--22339	21	2.7	21	81	10	71	15	3	3	77	1.05
22286--22341	16	3.6	15	83	7	67	14	3	3	78	1.02
25306--25347	17	2.4	18	96	4	77	23	4	0	71	1.05
27376--27424	21	2.3	21	79	6	64	22	24	18	34	1.96
27414--27465	21	2.5	21	87	3	70	38	17	23	21	1.93
27399--27630	41	5.7	41	73	7	150	33	19	18	27	1.96
27485--27547	20	3.0	21	76	4	65	23	20	17	38	1.93
27533--27630	20	4.8	20	88	2	151	40	17	19	22	1.91
27534--27650	61	1.9	59	86	8	164	39	17	18	23	1.92
28237--28310	20	4.1	19	70	19	68	12	24	20	43	1.86
30003--30306	94	3.3	94	93	3	503	21	12	18	46	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32168--32203	14	2.6	14	95	0	63	33	0	22	44	1.53
32342--32380	19	2.1	19	95	0	69	48	17	15	17	1.81
32381--32531	19	8.7	19	68	21	107	11	23	20	44	1.84
32385--32511	33	3.8	33	94	0	218	11	23	19	45	1.82
32484--32538	20	2.8	19	83	2	65	18	21	21	38	1.94
32505--32577	20	3.6	20	69	10	58	23	17	24	34	1.96
35041--35094	24	2.2	24	90	0	81	40	20	16	22	1.91
35834--35947	20	5.7	20	82	6	131	23	19	26	30	1.98
35894--36013	21	5.8	21	71	14	88	20	17	21	40	1.91
35841--36010	20	8.4	20	77	11	112	23	18	24	34	1.96
35814--35951	41	3.4	41	82	6	163	22	18	24	34	1.96
35896--36033	62	2.2	62	94	0	249	20	18	21	39	1.92
35937--36050	21	5.6	20	77	7	95	21	20	18	39	1.92
36040--36101	21	3.0	20	81	9	79	35	17	25	20	1.95
36614--36647	14	2.4	14	85	0	50	26	5	29	38	1.80
39970--40003	16	2.2	16	94	5	61	79	5	2	11	1.02
39957--40020	24	2.7	23	80	20	69	78	3	3	15	1.01
39960--40031	35	2.1	34	82	7	83	77	4	4	13	1.06
40646--40801	35	4.3	35	76	15	149	55	4	14	25	1.57
40646--40817	32	4.9	32	71	23	123	53	4	15	26	1.61
40647--40823	40	4.7	38	75	14	170	53	3	15	27	1.60
40657--40823	76	2.2	75	90	3	264	51	4	16	27	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40931--40957	14	1.9	14	100	0	54	81	0	0	18	0.69
41050--41074	11	2.3	11	100	0	50	84	0	0	16	0.63
40860--41173	118	2.6	120	85	4	418	47	14	14	23	1.81
42312--42610	122	2.5	122	82	4	345	26	13	24	35	1.92
42436--43572	220	5.2	219	86	1	1495	25	15	25	32	1.95
42436--43567	441	2.6	440	87	1	1570	26	15	25	32	1.95
43498--43593	43	2.3	41	78	5	104	22	19	25	32	1.98
43483--43760	140	2.0	139	83	2	351	24	16	26	32	1.96
43771--43805	17	2.1	16	89	5	52	25	11	14	48	1.77
47244--47308	11	5.6	11	78	12	60	3	13	9	73	1.19
48676--48719	21	2.0	23	82	8	56	20	15	20	43	1.88
51443--51501	15	3.7	15	84	6	64	77	3	1	16	0.98
51439--51507	18	3.8	18	72	18	54	75	2	2	18	1.06
51895--51926	15	2.1	15	94	0	55	53	25	6	15	1.65
52120--52244	40	3.2	40	76	10	134	52	4	15	28	1.61
52120--52285	74	2.2	75	89	2	244	52	3	15	29	1.57
52650--52706	29	2.0	29	92	0	96	47	1	19	31	1.60
52652--52715	29	2.2	29	86	5	85	46	3	17	32	1.63
52662--52724	29	2.2	29	82	5	74	52	3	12	31	1.55
53473--53550	33	2.4	33	85	8	97	38	0	1	60	1.05
55271--55318	21	2.3	21	85	0	60	25	39	12	22	1.89
55322--55415	21	4.5	21	89	5	120	18	34	26	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55938--56034	33	2.9	34	85	3	133	55	4	3	37	1.35
55936--56041	34	3.2	33	82	8	133	54	4	2	37	1.36
71075--71130	23	2.5	20	75	25	51	28	3	1	66	1.19
76255--76294	19	2.0	20	85	4	55	45	22	12	20	1.84

Tables:   1

The End!