genome.fa.s721.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000721.1 Hibiscus syriacus cultivar Beakdansim tig00001399_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  67105

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516--577	18	3.5	18	73	20	67	16	29	35	19	1.93
21222--21264	21	2.0	21	86	0	59	30	27	25	16	1.97
21620--21659	14	2.7	15	80	3	55	42	12	12	32	1.80
21796--21862	25	2.7	25	95	0	125	17	26	26	28	1.98
21979--22023	23	2.0	23	86	0	63	20	26	26	26	1.99
28046--28088	21	2.0	21	86	0	59	30	27	25	16	1.97
28445--28484	14	2.7	15	80	3	55	42	12	12	32	1.80
28619--28694	25	3.0	25	90	1	125	19	23	23	32	1.97
28802--28846	23	2.0	23	86	0	63	20	26	26	26	1.99
30291--30328	13	2.9	13	88	0	58	15	44	21	18	1.86
30288--30339	18	3.2	18	74	23	60	17	44	19	19	1.87
31664--31698	18	1.9	18	88	0	52	54	0	17	28	1.43
32819--32887	12	5.8	12	76	10	52	18	13	18	49	1.79
32785--32889	47	2.2	47	80	13	117	20	13	18	47	1.82
32796--32891	24	4.0	24	80	8	99	20	13	17	47	1.81
35040--35093	18	2.9	18	75	5	54	18	40	22	18	1.91
35026--35062	13	2.8	13	87	0	56	18	48	18	13	1.80
35075--35110	15	2.2	16	90	9	56	13	33	30	22	1.93
36390--36424	18	1.9	18	88	0	52	54	0	17	28	1.43
37536--37604	12	5.8	12	78	10	61	17	14	18	49	1.80
37537--37608	24	3.0	23	86	6	99	19	12	18	50	1.78
41805--42169	179	2.0	179	85	3	493	32	15	13	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43719--43782	6	10.7	6	87	0	83	20	32	4	42	1.73
43719--43782	12	5.3	12	94	0	101	20	32	4	42	1.73
45250--45998	201	3.7	201	95	0	1282	33	16	13	36	1.88
46254--46302	19	2.6	19	86	0	80	57	6	0	36	1.24
48085--48148	33	1.9	33	90	0	101	23	45	0	31	1.53
48182--48246	21	3.1	21	88	0	85	16	30	10	41	1.83
48329--48361	15	2.2	15	94	0	57	15	63	3	18	1.43
48648--48698	24	2.2	24	86	6	70	49	3	0	47	1.20

Tables:   1

The End!