Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007212.1 Hibiscus syriacus cultivar Beakdansim tig00019065_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72686

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4572--4606
17
2.1
17
89
10
54
54
2
22
20
1.58
6561--6610
19
2.5
20
96
3
93
20
36
24
20
1.95
13629--13657
12
2.4
12
100
0
58
27
31
41
0
1.56
13958--14031
23
3.2
23
77
17
64
16
1
27
55
1.49
14661--14715
22
2.5
22
96
0
101
21
38
23
16
1.93
16402--16591
99
1.9
99
87
0
281
35
16
18
30
1.93
18422--18508
41
2.1
42
89
2
131
26
19
20
33
1.97
18640--18763
42
3.0
41
80
4
133
26
20
20
31
1.98
18300--19061
239
3.1
236
82
8
802
33
14
17
33
1.91
19170--19523
196
1.8
195
87
1
530
33
14
17
34
1.90
19543--20398
236
3.5
244
78
9
778
30
15
19
34
1.92
19559--20252
236
3.0
232
83
6
803
31
14
18
35
1.91
20895--20925
2
15.5
2
100
0
62
51
0
0
48
1.00
22432--22507
37
2.1
36
90
2
116
10
5
36
47
1.61
22557--22709
33
4.6
33
90
1
216
15
9
32
43
1.79
30228--30293
30
2.2
30
78
7
73
43
4
15
36
1.67
36249--36287
20
2.1
18
85
9
51
53
5
5
35
1.45
36389--36422
16
2.1
16
100
0
68
41
11
5
41
1.66
36646--36682
14
2.4
16
86
8
51
51
18
2
27
1.60
37634--37677
16
2.8
16
80
13
63
9
0
27
63
1.24
37631--37709
30
2.5
31
82
9
90
16
0
24
59
1.37
37635--37707
16
4.7
15
74
17
60
13
0
24
61
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37933--37966
16
2.1
16
94
0
59
38
5
11
44
1.65
40619--40683
2
32.5
2
100
0
130
50
0
0
49
1.00
41004--41032
2
14.5
2
100
0
58
0
0
48
51
1.00
49795--49844
22
2.3
22
100
0
100
20
18
16
46
1.85
50361--50465
17
6.2
17
77
4
88
38
6
14
40
1.72
50405--50485
34
2.4
34
81
4
101
41
8
12
37
1.73
50385--50481
51
1.9
51
82
4
124
42
7
13
37
1.72
51702--51752
24
2.1
24
82
7
59
7
23
13
54
1.65
53891--53932
18
2.3
19
80
12
52
23
11
35
28
1.91
54987--55043
17
3.4
17
70
0
51
38
7
17
36
1.77
55020--55074
17
3.2
17
75
14
51
32
14
18
34
1.91
56860--56957
26
3.9
26
82
6
121
35
15
24
24
1.94
56989--57218
117
2.0
117
85
0
316
28
16
19
36
1.93
66737--66856
61
2.0
61
86
0
168
26
19
26
27
1.99
71002--71043
18
2.3
19
80
16
52
19
23
28
28
1.98
71039--71112
16
4.4
17
90
8
116
17
44
22
14
1.86
71989--72062
31
2.4
30
75
6
76
14
27
29
28
1.95
72036--72110
30
2.5
32
70
10
77
18
28
25
28
1.98

Tables:   1

The End!