genome.fa.s7214.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007214.1 Hibiscus syriacus cultivar Beakdansim tig00019074_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70539

Tables:   1   

This is table  1  of  1  ( 64 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4494--4538	22	2.0	22	100	0	90	17	8	31	42	1.80
11583--11643	20	3.0	20	86	9	88	18	26	37	18	1.93
14297--14465	66	2.5	65	89	4	223	23	23	27	26	2.00
14320--14465	66	2.2	66	93	2	249	23	22	27	26	1.99
14430--14507	20	3.9	21	86	5	99	15	26	37	20	1.92
14430--14507	41	1.9	40	86	2	111	15	26	37	20	1.92
19417--19513	25	3.9	25	97	1	178	24	15	20	39	1.91
19634--19689	3	18.3	3	89	10	87	67	0	0	32	0.91
19957--20206	43	5.8	44	72	13	166	24	19	30	25	1.98
19874--20202	129	2.5	130	87	1	437	25	20	28	25	1.99
20251--20312	28	2.2	28	82	5	81	50	12	12	24	1.76
20450--20586	37	3.8	36	75	9	109	40	11	14	33	1.82
20450--20589	38	3.9	34	71	14	104	39	11	14	35	1.82
22044--22180	37	3.8	36	75	9	109	40	11	14	33	1.82
22044--22183	38	3.9	34	71	14	104	39	11	14	35	1.82
22420--22457	15	2.5	15	95	0	67	42	5	18	34	1.73
22559--22638	40	2.0	40	87	4	117	37	11	20	31	1.87
22620--22745	65	2.0	64	88	1	189	42	11	14	31	1.80
22642--22866	120	1.9	121	81	7	280	41	12	14	30	1.84
22967--23130	67	2.5	65	91	4	244	46	10	11	30	1.74
22987--23102	37	3.3	37	66	16	111	45	10	12	31	1.75
22986--23130	67	2.2	68	93	6	262	46	11	11	31	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23014--23187	95	1.8	93	86	4	251	42	13	10	33	1.79
23081--23149	28	2.5	28	90	4	104	43	14	7	34	1.73
23237--23506	29	9.4	29	74	13	177	47	14	11	27	1.78
23190--23525	147	2.3	147	95	2	606	45	15	12	26	1.81
23747--23844	36	2.8	35	81	3	117	33	12	18	35	1.88
23748--23866	36	3.4	36	80	6	111	35	12	21	31	1.90
24024--24126	36	2.9	35	86	5	143	36	11	19	32	1.88
24468--24509	4	11.2	4	80	14	54	26	0	21	52	1.47
24470--24505	18	2.1	17	94	5	63	25	0	22	52	1.47
24788--24832	24	1.9	24	90	4	74	46	4	8	40	1.55
26331--26401	20	3.0	24	69	22	78	40	11	23	23	1.87
26318--26392	20	3.5	20	70	20	62	37	10	25	26	1.89
26328--26407	26	3.3	26	68	20	82	42	10	23	23	1.84
26316--26409	46	2.1	45	91	2	152	38	9	25	26	1.87
27801--27862	32	2.0	32	96	3	117	61	9	14	14	1.57
31447--31568	25	4.9	25	94	1	201	27	15	18	39	1.90
31690--31749	3	19.3	3	86	13	86	68	0	0	31	0.90
31682--31749	25	2.7	25	86	13	88	67	1	0	30	0.99
31678--31749	28	2.6	27	87	12	103	66	1	0	31	1.00
31692--31755	19	3.4	19	85	12	87	68	0	1	29	0.99
35405--35980	112	5.1	112	94	0	981	44	14	15	25	1.84
35852--36302	182	2.5	182	94	0	776	43	13	16	27	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36815--36854	21	1.9	21	90	10	64	27	25	22	25	2.00
36847--36888	11	3.8	11	83	0	57	35	23	14	26	1.93
37157--37191	2	17.5	2	100	0	70	51	0	0	48	1.00
37357--37479	59	2.1	59	83	3	149	34	21	11	33	1.89
37439--37742	59	5.2	59	71	9	208	29	22	11	36	1.89
37394--37705	118	2.6	117	92	1	489	29	21	11	37	1.89
37396--37777	118	3.2	118	88	1	435	29	21	11	37	1.88
38116--38276	63	2.5	62	80	7	173	24	22	18	34	1.96
44076--44119	21	2.1	21	91	8	72	25	20	25	29	1.99
44112--44153	11	3.8	11	83	0	57	35	23	14	26	1.93
44685--45008	59	5.5	59	72	7	230	29	21	11	37	1.89
44641--45007	118	3.1	118	88	2	481	29	20	11	37	1.89
47685--47718	14	2.7	12	86	13	50	20	0	0	79	0.73
50267--50506	95	2.7	95	82	10	281	29	17	20	32	1.96
51659--52666	84	12.1	84	80	4	1073	29	25	20	24	1.99
51639--52505	332	2.6	332	87	1	1279	30	25	20	24	1.98
51659--52686	249	4.1	248	82	4	1112	29	24	20	24	1.99
51659--52752	164	6.6	164	82	6	550	30	24	20	25	1.99
53440--53478	4	9.8	4	100	0	78	74	0	0	25	0.82
59500--59537	20	1.9	20	88	0	58	26	36	26	10	1.89

Tables:   1

The End!