Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007216.1 Hibiscus syriacus cultivar Beakdansim tig00019080_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76273

Tables:   1   

This is table  1  of  1  ( 39 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2190--2247
2
29.0
2
100
0
116
50
0
0
50
1.00
6144--6205
24
2.6
24
87
10
83
46
3
1
48
1.28
6210--6243
15
2.4
14
90
5
50
41
0
2
55
1.15
6210--6257
7
7.1
7
76
23
50
39
0
2
58
1.10
9466--9561
48
2.0
48
95
0
174
35
22
21
19
1.96
11129--11166
20
1.9
20
94
0
67
36
28
13
21
1.91
13632--13684
21
2.5
22
78
9
65
32
20
13
33
1.91
14975--15089
57
2.0
57
94
0
203
45
15
18
20
1.86
15592--15626
15
2.3
15
90
5
52
51
0
14
34
1.42
19086--19149
20
3.0
21
75
4
58
34
23
10
31
1.89
19086--19127
21
2.0
22
85
4
59
33
26
11
28
1.92
19205--19305
21
4.8
22
79
8
111
39
24
10
24
1.87
19198--19306
42
2.6
42
92
0
173
37
24
12
24
1.91
20252--20763
225
2.3
224
79
0
547
33
21
16
28
1.95
20618--21019
203
2.0
203
81
3
470
32
19
18
30
1.95
27092--27147
13
4.7
11
74
21
51
0
19
1
78
0.84
27092--27147
18
3.1
18
82
17
71
0
19
1
78
0.84
28988--29024
15
2.5
15
95
0
65
37
35
13
13
1.84
31130--31164
11
3.1
11
91
4
52
57
0
0
42
0.99
36214--36249
12
2.9
12
91
4
54
55
0
0
44
0.99
36877--36947
28
2.5
28
77
13
72
46
5
7
40
1.54
53238--53272
14
2.5
14
85
0
52
17
8
11
62
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
55773--55851
19
4.0
20
75
18
67
39
2
5
53
1.37
57613--57758
30
4.9
30
88
2
188
35
4
15
43
1.68
57613--57758
59
2.5
60
86
2
197
35
4
15
43
1.68
57615--57778
30
5.5
29
84
5
125
35
4
15
43
1.69
58808--58860
25
2.1
25
85
0
70
26
5
16
50
1.67
62440--62487
25
1.9
25
100
0
96
31
12
20
35
1.90
63674--63744
18
3.8
18
80
7
88
26
30
21
21
1.98
63672--63755
38
2.2
38
87
4
125
23
29
19
27
1.98
63672--63755
18
4.4
20
75
8
77
23
29
19
27
1.98
64486--64663
64
2.8
64
87
5
218
23
19
22
34
1.97
69799--69835
2
19.0
2
94
5
67
48
0
0
51
1.00
70195--70372
64
2.8
64
88
5
227
23
20
23
33
1.97
72986--73069
29
2.9
29
82
3
89
38
4
13
44
1.64
73006--73085
29
2.9
27
80
9
72
41
3
12
42
1.60
73961--74035
31
2.4
30
80
4
87
14
25
32
28
1.95
74008--74062
24
2.3
24
96
0
101
20
23
29
27
1.99
74123--74175
25
2.1
25
89
0
79
28
7
16
47
1.74

Tables:   1

The End!