genome.fa.s7217.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007217.1 Hibiscus syriacus cultivar Beakdansim tig00019086_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  91047

Tables:   1   

This is table  1  of  1  ( 67 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615--680	21	3.0	22	74	24	68	31	24	18	25	1.97
853--924	21	3.4	21	96	0	126	26	23	13	36	1.93
1311--1441	54	2.4	54	87	3	174	27	24	19	29	1.98
1425--1477	20	2.6	21	85	5	74	28	28	15	28	1.96
2194--2857	330	2.0	330	94	0	1148	37	18	15	27	1.92
4427--4472	24	1.9	24	90	0	74	8	13	41	36	1.75
4429--4478	6	8.3	6	84	0	55	6	12	42	40	1.67
4426--4463	12	3.2	12	92	0	67	10	15	42	31	1.81
4825--4849	10	2.5	10	100	0	50	52	8	28	12	1.66
4893--4936	23	2.0	22	86	8	63	45	4	13	36	1.64
5213--5324	24	4.6	24	73	15	79	50	0	0	49	1.06
5238--5340	15	6.3	15	75	17	73	52	0	0	46	1.07
5227--5342	6	19.3	6	67	27	61	50	1	0	47	1.11
5275--5315	9	4.9	9	82	17	61	53	0	0	46	1.00
5357--5469	31	3.5	30	78	18	104	49	3	4	42	1.40
5364--5410	24	1.9	25	82	4	60	53	6	2	38	1.39
5422--5512	43	2.2	40	86	7	119	47	3	6	42	1.46
5297--5535	65	3.7	65	77	15	226	48	3	4	43	1.40
5524--5626	22	4.8	22	71	17	90	47	8	6	36	1.61
5553--5605	21	2.5	21	84	0	70	45	5	9	39	1.60
5648--5743	20	4.9	20	72	7	74	42	6	7	43	1.57
5729--5802	37	2.1	36	87	5	105	41	9	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5636--5785	57	2.6	58	85	7	191	42	7	8	42	1.63
5844--5883	21	1.9	21	84	0	53	20	2	25	52	1.59
5824--5891	35	1.9	35	85	5	93	25	1	22	51	1.56
5838--5904	28	2.4	28	84	0	89	22	1	25	50	1.57
6010--6049	20	2.0	20	90	0	62	40	10	5	45	1.60
6068--6128	24	2.5	24	94	0	104	39	9	9	40	1.72
6352--6731	2	198.5	2	62	22	59	43	3	3	48	1.38
6421--6589	25	7.2	24	68	15	93	44	2	3	49	1.35
6444--6481	17	2.4	15	91	8	58	42	5	5	47	1.48
6406--6552	29	5.1	29	73	15	124	46	2	2	48	1.28
6406--6634	116	2.0	116	87	5	329	44	3	3	48	1.38
6654--6689	18	1.9	19	94	5	65	44	0	5	50	1.25
6562--6725	13	13.3	13	67	20	70	42	4	4	48	1.44
6352--6724	15	25.0	15	66	21	94	43	4	3	48	1.38
15080--15106	2	13.5	2	100	0	54	48	0	0	51	1.00
15130--15170	15	2.5	18	77	22	54	41	9	4	43	1.59
16999--17065	22	3.0	22	91	0	107	41	7	31	19	1.79
17531--17565	16	2.1	17	94	5	63	37	0	20	42	1.52
19347--19393	23	2.0	23	91	0	76	40	8	31	19	1.81
25283--25330	20	2.4	20	96	0	87	41	0	14	43	1.45
28975--29000	13	2.0	13	100	0	52	38	15	23	23	1.92
29167--29192	3	8.7	3	100	0	52	0	0	30	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31323--31373	14	3.6	14	79	15	61	68	1	27	1	1.11
33015--33053	21	1.9	21	94	5	71	35	7	7	48	1.61
34578--34809	48	4.8	48	80	2	212	21	17	26	34	1.95
34878--34986	30	3.7	30	81	6	109	45	7	20	26	1.77
37793--37909	60	2.0	60	87	0	171	38	9	17	35	1.82
38243--38285	13	3.4	12	78	9	50	37	2	2	58	1.24
42310--42632	160	2.0	162	94	5	568	30	11	13	44	1.79
45624--45668	21	2.1	21	100	0	90	8	35	13	42	1.75
51460--51489	2	15.0	2	100	0	60	50	0	0	50	1.00
57239--57426	100	1.9	100	95	0	340	53	6	18	20	1.67
64029--64089	21	2.9	21	90	0	86	29	27	18	24	1.98
65587--65659	35	2.1	36	81	2	85	21	23	17	36	1.94
71869--71951	31	2.8	30	80	10	98	46	3	16	32	1.65
74344--74485	25	5.8	25	90	0	198	23	18	20	37	1.94
74390--74499	50	2.2	49	90	0	139	23	19	21	35	1.96
74797--74868	9	8.1	9	76	14	51	27	2	1	68	1.12
74809--74859	18	2.8	18	83	16	70	29	0	0	70	0.87
74809--74866	17	3.3	17	81	15	73	29	0	1	68	0.99
79606--79916	45	7.0	45	84	1	349	29	21	9	38	1.86
79606--79916	135	2.3	134	82	4	394	29	21	9	38	1.86
80329--80385	22	2.7	20	79	12	69	26	26	14	33	1.94
80422--80474	20	2.7	20	100	0	106	24	32	16	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88065--88327	36	7.1	36	88	5	364	19	26	23	30	1.98

Tables:   1

The End!