Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01000722.1 Hibiscus syriacus cultivar Beakdansim tig00001401_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56580

Tables:   1   

This is table  1  of  1  ( 34 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
222--288
30
2.2
29
84
10
82
52
10
1
35
1.45
408--457
18
2.9
16
83
13
64
40
0
2
58
1.10
405--452
16
2.8
17
84
9
71
41
0
2
56
1.11
406--459
16
3.3
15
79
20
63
37
0
1
61
1.07
1934--1966
14
2.3
15
94
5
59
63
0
27
9
1.24
7222--7268
23
2.0
23
84
8
60
57
12
2
27
1.47
20769--20817
24
2.0
25
88
4
73
44
4
0
51
1.20
22818--22881
33
1.9
33
93
0
110
43
14
9
32
1.77
25396--27109
854
2.0
854
100
0
3428
33
16
16
33
1.91
27702--28016
110
2.9
110
90
1
508
34
21
17
25
1.95
27928--28111
95
1.9
95
91
0
296
33
21
17
27
1.96
28317--28530
81
2.6
84
80
4
258
30
26
18
24
1.98
29254--29296
21
2.0
21
81
0
50
30
25
25
18
1.98
29705--29775
30
2.3
31
90
2
108
39
2
23
33
1.70
29968--30046
26
3.2
24
84
12
97
24
25
22
27
2.00
29964--30041
24
3.1
24
83
10
86
23
24
25
26
2.00
36065--36107
21
2.0
21
86
0
59
30
27
25
16
1.97
36516--36586
30
2.3
30
87
2
97
38
2
23
35
1.70
36786--36839
25
2.2
24
83
9
65
22
27
22
27
1.99
37443--37741
84
3.6
82
76
8
277
29
25
20
24
1.99
37463--37722
84
3.2
79
78
6
286
30
26
20
23
1.98
37445--37741
165
1.8
164
86
2
434
29
25
20
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38070--38142
3
23.7
3
81
18
64
30
0
1
68
0.98
38067--38144
8
9.6
8
76
15
56
29
0
1
69
0.97
38192--38278
33
2.6
33
88
1
129
40
20
11
27
1.87
43734--43774
17
2.3
18
83
8
57
65
0
0
34
0.93
44141--44179
18
2.2
18
85
0
51
58
25
2
12
1.47
44064--44170
45
2.4
45
93
3
180
50
23
4
21
1.67
46888--46913
2
13.0
2
100
0
52
50
0
0
50
1.00
47361--47401
19
2.3
18
87
8
57
34
0
0
65
0.93
47367--47424
19
2.9
19
79
5
62
39
0
0
60
0.97
47844--47886
4
10.8
4
94
0
77
51
20
0
27
1.48
49484--49533
21
2.4
21
80
9
57
48
2
2
48
1.24
53398--53424
2
13.5
2
100
0
54
51
0
0
48
1.00

Tables:   1

The End!