genome.fa.s7220.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007220.1 Hibiscus syriacus cultivar Beakdansim tig00019097_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114836

Tables:   1   

This is table  1  of  1  ( 89 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5769--5826	25	2.4	24	75	11	57	37	1	1	58	1.18
26617--26683	2	33.5	2	86	5	91	46	1	2	49	1.26
30238--30274	2	18.5	2	94	0	65	0	48	0	51	1.00
30226--30274	16	3.1	16	88	5	55	0	44	4	51	1.20
32517--32674	21	7.8	20	72	7	86	38	25	17	18	1.92
32641--32950	20	15.5	20	88	1	361	37	24	18	19	1.94
33633--33679	24	2.0	24	87	8	69	25	14	21	38	1.92
36124--36274	19	8.7	19	72	21	143	45	18	21	15	1.86
36124--36236	53	2.2	52	91	4	183	46	18	20	14	1.83
36196--36250	14	3.6	14	73	21	56	45	20	23	10	1.82
36177--36268	33	2.8	33	98	0	175	45	18	21	14	1.84
36110--36274	86	1.9	85	91	3	269	44	18	21	14	1.86
36264--36343	34	2.4	33	93	4	142	12	26	18	42	1.86
36283--36362	19	4.4	19	80	16	107	13	22	17	46	1.83
36468--36504	14	2.6	14	91	0	65	45	21	0	32	1.52
38485--38541	14	3.7	14	72	20	51	43	24	21	10	1.83
38466--38558	33	2.8	33	91	0	159	46	22	20	10	1.81
38429--38563	19	7.6	19	74	18	94	45	24	19	11	1.82
38559--38687	19	7.3	19	74	17	116	8	16	28	46	1.76
38559--38650	33	2.8	33	91	3	141	7	17	28	46	1.75
38735--39203	93	5.1	93	99	0	922	46	19	12	21	1.83
40909--40998	14	5.7	14	69	23	63	44	22	23	10	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40901--41015	33	3.5	33	97	0	221	46	20	22	10	1.80
40923--41020	19	5.7	19	69	22	90	44	21	22	11	1.83
41032--41088	14	3.7	14	72	20	51	10	22	22	43	1.84
41016--41096	33	2.5	33	93	0	135	9	20	22	46	1.80
41073--41148	21	3.7	21	82	3	100	13	23	17	46	1.83
41072--41149	41	1.9	41	94	0	138	14	24	16	44	1.84
41228--41298	33	2.2	33	92	0	115	47	18	22	11	1.80
41480--41534	22	2.5	22	81	0	74	20	16	40	23	1.91
41681--41834	20	7.7	20	81	7	168	18	18	26	37	1.93
41680--41834	40	3.8	40	82	4	186	18	18	26	37	1.93
41821--41903	21	4.0	21	70	6	69	26	15	24	33	1.95
42359--42439	39	2.0	40	80	7	92	40	1	3	54	1.26
42505--42562	30	1.9	30	83	13	75	46	0	3	50	1.18
42607--42667	18	3.1	18	81	11	59	45	0	1	52	1.10
42595--42661	23	2.9	23	86	2	89	49	0	1	49	1.10
42640--42759	42	2.8	45	70	23	105	50	0	1	46	1.17
43259--43317	23	2.5	23	76	17	59	59	5	0	35	1.20
44085--44142	21	2.8	21	83	0	71	22	20	25	31	1.98
44633--44681	25	2.0	25	84	8	64	42	2	12	42	1.53
44701--44850	75	2.0	74	93	1	255	45	3	10	41	1.54
47141--47177	18	2.0	19	94	5	67	43	21	8	27	1.80
66248--66278	12	2.6	12	100	0	62	67	9	6	16	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67422--67468	23	2.0	23	100	0	94	25	4	17	53	1.62
67669--67720	21	2.5	21	83	0	68	59	19	1	19	1.47
69406--69451	10	4.5	10	84	10	58	60	17	2	19	1.46
69406--69464	21	2.8	20	82	7	73	59	20	1	18	1.47
69785--69815	2	15.5	2	100	0	62	48	0	0	51	1.00
75276--75313	20	1.9	20	88	0	58	23	2	10	63	1.39
75374--75404	2	15.5	2	93	0	53	45	3	0	51	1.17
75437--75795	37	9.7	36	75	11	228	44	3	6	45	1.47
75437--75793	74	4.8	75	74	12	281	44	3	6	45	1.47
75792--75821	2	15.0	2	100	0	60	50	0	0	50	1.00
75819--75868	3	16.3	3	84	12	66	28	2	0	70	0.99
75819--75868	15	3.2	16	88	8	77	28	2	0	70	0.99
75821--75869	18	2.7	18	90	9	73	26	2	0	71	0.97
80695--80940	94	2.7	95	86	9	311	30	19	19	31	1.96
82085--83123	165	6.3	165	89	1	1539	28	25	21	24	1.99
83714--83738	2	12.5	2	100	0	50	48	0	0	52	1.00
83797--84130	37	9.1	36	73	12	180	43	3	6	46	1.48
83771--84130	74	4.8	73	76	8	307	43	3	6	45	1.48
83845--84125	147	1.9	147	82	5	352	43	3	6	45	1.48
83781--84123	184	1.9	185	84	4	469	43	3	6	45	1.49
84129--84186	25	2.4	25	80	13	59	29	1	1	67	1.11
84143--84187	18	2.4	18	89	10	65	24	2	0	73	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84143--84186	15	2.8	16	86	6	63	25	2	0	72	0.96
93048--93153	48	2.2	49	83	6	128	18	14	15	51	1.76
93064--93156	24	3.9	24	77	2	80	20	13	15	50	1.77
94107--94290	95	1.9	95	88	0	278	28	16	17	37	1.92
94103--94311	95	2.2	94	83	2	274	28	16	17	37	1.92
94813--94841	3	10.0	3	92	7	51	65	0	0	34	0.93
94898--94930	2	16.5	2	100	0	66	48	0	0	51	1.00
96832--97004	87	2.0	87	93	0	292	41	18	15	24	1.90
99771--99865	21	4.6	21	80	7	115	18	17	27	35	1.94
99796--99893	40	2.4	42	94	3	173	21	17	25	35	1.95
99817--99886	21	3.4	21	70	18	67	20	18	22	38	1.93
104645--104682	17	2.2	17	100	0	76	10	23	47	18	1.79
104604--104655	7	7.4	7	100	0	104	26	28	28	15	1.96
104652--104704	22	2.4	22	90	0	79	9	22	47	20	1.79
104701--104759	9	6.3	9	78	7	64	28	30	25	15	1.96
104704--104759	19	2.9	19	86	0	76	30	32	23	14	1.94
111876--111913	17	2.2	17	100	0	76	10	23	47	18	1.79
111883--111932	22	2.2	24	92	7	86	8	22	52	18	1.71
111929--111988	9	6.3	9	79	11	66	28	30	26	15	1.96
111888--111941	14	4.3	13	78	21	62	11	24	48	16	1.79
111932--111988	19	2.9	19	87	5	78	29	31	24	14	1.94
111935--111989	20	2.8	20	88	2	76	29	30	23	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113399--113458	29	2.2	25	75	21	59	36	1	10	51	1.45

Tables:   1

The End!