genome.fa.s7221.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007221.1 Hibiscus syriacus cultivar Beakdansim tig00019106_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  131285

Tables:   1   

This is table  1  of  1  ( 81 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4535--4576	20	2.0	21	90	4	68	0	7	9	83	0.81
5996--6141	20	6.7	20	76	17	139	43	12	24	19	1.86
5926--6121	90	2.2	91	90	1	304	43	12	22	20	1.86
5926--6121	46	4.3	46	89	2	306	43	12	22	20	1.86
5898--6103	26	7.7	25	69	22	125	44	12	21	21	1.85
12656--13069	46	9.0	46	94	0	702	42	12	23	21	1.86
14301--14359	2	28.5	2	77	13	57	45	1	3	49	1.28
14415--14531	9	11.4	11	68	23	60	47	9	4	39	1.56
14592--14780	27	6.7	28	72	16	131	42	6	4	47	1.48
14578--14780	2	96.5	2	64	22	62	42	6	3	46	1.49
14773--14812	18	2.2	18	86	0	53	50	2	2	45	1.28
14769--14820	25	2.1	24	85	3	68	46	1	5	46	1.38
14698--14843	60	2.3	60	83	8	168	43	4	3	48	1.38
14742--14872	60	2.2	60	82	5	158	44	3	4	47	1.41
14963--15016	13	4.2	13	76	9	56	46	5	9	38	1.59
14992--15069	18	4.6	18	71	17	69	44	3	7	43	1.51
15012--15084	26	3.0	27	69	22	70	45	4	6	43	1.49
15053--15119	24	2.7	25	79	9	75	47	5	2	43	1.43
15148--15287	61	2.3	61	87	3	212	49	7	9	33	1.64
15579--15786	101	2.0	102	90	2	330	34	29	5	30	1.80
15709--15919	112	1.9	111	81	7	248	31	27	6	34	1.83
16096--16160	18	3.6	18	80	2	76	43	43	7	6	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16084--16163	36	2.2	36	86	4	108	43	42	7	6	1.58
17253--17291	19	2.1	19	85	0	51	58	0	10	30	1.31
21196--21228	17	1.9	17	100	0	66	48	12	3	36	1.56
21529--21574	17	2.6	17	89	6	65	39	0	0	60	0.97
21529--21588	27	2.1	30	87	9	90	38	0	0	61	0.96
21529--21574	3	15.3	3	82	8	58	39	0	0	60	0.97
23333--23374	17	2.6	16	78	10	50	33	0	4	61	1.17
30871--32079	257	4.7	257	85	3	1503	33	16	16	34	1.91
34154--34196	17	2.6	16	86	13	61	30	0	4	65	1.13
36381--37252	258	3.4	255	86	3	1135	32	16	17	33	1.92
43186--43236	3	16.7	3	84	11	68	29	1	0	68	1.00
48741--48770	14	2.1	14	93	0	51	50	6	0	43	1.28
49631--49676	7	6.6	7	79	0	56	15	0	41	43	1.46
49631--49676	14	3.3	14	87	0	65	15	0	41	43	1.46
51579--51622	22	2.0	22	81	0	52	52	15	4	27	1.63
53686--53752	3	23.0	3	82	11	68	65	1	4	28	1.21
53904--54193	40	6.9	41	74	14	179	25	18	33	22	1.97
53911--54245	40	7.8	44	74	14	161	25	19	31	23	1.98
53910--54245	128	2.6	128	94	1	579	25	19	31	23	1.98
54351--54449	35	2.7	37	84	13	134	35	10	20	34	1.86
54381--54485	35	3.0	35	86	8	133	35	10	20	34	1.87
54725--54768	15	2.9	15	86	0	61	45	4	18	31	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55252--55372	37	3.5	37	70	15	130	43	10	12	33	1.77
55234--55402	67	2.5	67	98	0	320	45	11	12	30	1.77
55289--55419	30	4.1	30	74	12	127	42	12	10	33	1.78
55507--55801	29	10.0	29	78	9	249	45	14	9	29	1.77
55687--55811	56	2.2	56	80	9	148	48	14	8	28	1.74
55478--55807	179	1.8	179	96	1	608	45	15	11	28	1.80
56053--56157	36	2.9	36	81	4	124	38	11	18	32	1.86
56054--56172	36	3.4	33	79	9	112	37	12	19	30	1.89
56124--56356	105	2.3	101	83	9	276	37	12	19	30	1.88
57966--58001	12	2.9	12	87	4	54	5	11	11	72	1.28
57963--58023	25	2.5	24	76	10	61	3	19	8	68	1.29
58624--58702	26	3.3	26	66	21	73	43	10	24	22	1.84
58612--58704	46	2.1	44	89	4	141	38	9	25	25	1.86
62494--62537	22	2.0	22	81	0	52	52	15	4	27	1.63
64595--64658	3	22.0	3	81	12	62	65	1	4	28	1.21
65921--65975	23	2.4	23	96	0	101	36	25	20	18	1.94
82949--82978	15	2.0	15	93	0	51	13	16	50	20	1.78
85384--85426	21	2.0	21	81	0	50	30	30	25	13	1.94
85453--85489	19	1.9	19	88	0	56	24	35	29	10	1.89
85969--86284	150	2.1	150	93	1	537	27	17	21	34	1.95
86252--86296	23	2.0	23	86	0	63	20	26	26	26	1.99
88105--88143	6	6.5	6	81	0	51	43	7	48	0	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88113--88143	12	2.6	12	100	0	62	41	6	51	0	1.27
92921--93228	150	2.1	150	93	0	528	27	16	21	35	1.94
93204--93248	23	2.0	23	81	0	54	20	24	26	28	1.99
100034--100064	13	2.4	13	94	0	53	0	9	6	83	0.79
106690--106740	23	2.2	24	82	3	59	41	7	9	41	1.67
111374--111415	16	2.5	17	81	14	52	54	4	7	33	1.49
111990--112039	23	2.2	23	85	0	64	42	8	10	40	1.68
120331--120368	16	2.5	15	87	12	51	52	0	0	47	1.00
120313--120370	15	3.9	15	72	22	50	48	0	1	50	1.11
120350--120397	23	2.0	24	84	4	62	41	2	0	56	1.11
125222--125281	3	20.0	3	92	0	102	63	0	0	36	0.95
125746--125846	42	2.4	41	77	3	112	31	18	23	25	1.98
125905--126191	56	5.3	56	73	16	191	40	19	9	30	1.83
126087--126190	55	1.9	55	86	3	149	44	21	8	25	1.81
126107--126223	55	2.2	54	87	3	164	41	21	8	28	1.82

Tables:   1

The End!